HHsearch alignment for GI: 254780701 and conserved domain: COG5002

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00  E-value=1.2e-42  Score=384.63  Aligned_cols=232  Identities=28%  Similarity=0.444  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999889999977642013899999999985033687893789999999999999999999999999874220015653
Q gi|254780701|r  244 EENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSE  323 (495)
Q Consensus       244 ~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~  323 (495)
T Consensus       220 k~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~--d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~  297 (459)
T COG5002         220 KVERERREFVANVSHELRTPLTSMKSYLEALEEGAWE--DKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNK  297 (459)
T ss_pred             HHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             8899999998861403147367899999997468744--71232689987478899999999999877257632566657


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCC-CEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf             10119999999999999999731122-10003676101047989999887776556886067988799999997698599
Q gi|254780701|r  324 SAISLIDIVRECIIMLQLRAQEKNIE-IFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQY  402 (495)
Q Consensus       324 ~~v~L~~li~~~~~~~~~~A~~~~~~-l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~  402 (495)
T Consensus       298 e~inft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~-~~~~v~  376 (459)
T COG5002         298 EWINFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ-RETWVE  376 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-ECCEEE
T ss_conf             8887488999999999998756778899960888864899670689999999987775248999739999963-075899


Q ss_pred             EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHHCC
Q ss_conf             9998789978987854422652315777678999888058999999996198599997989952988984724707
Q gi|254780701|r  403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTRVL  478 (495)
Q Consensus       403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~~~  478 (495)
T Consensus       377 iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~~  452 (459)
T COG5002         377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA  452 (459)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCCCC
T ss_conf             9974688899840689999988522366540378776129999999997098577760458861799995466766