HHsearch alignment for GI: 254780701 and conserved domain: PRK09959

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional.
Probab=100.00  E-value=0  Score=512.90  Aligned_cols=248  Identities=31%  Similarity=0.438  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999988999997764201389999999998503368789378999999999999999999
Q gi|254780701|r  225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNL  304 (495)
Q Consensus       225 ~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~L  304 (495)
T Consensus       688 ITerk~~e~~L~~Ak~~Ae~An~AKS~FLA~MSHEIRTPLn~IiG~~eLL~~~~l---~~~q~~~~l~~~~~Sa~~LL~L  764 (1197)
T PRK09959        688 ITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGL---SKEQRVEAISLAYATGQSLLGL  764 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1289999999999999999998888888874735316568999999999846899---9899999999999999999998


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCC-CCHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999874220015653101199999999999999997311221000367-610104798999988777655688606
Q gi|254780701|r  305 INEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDP-SLSSVWADEKGMRQVILNLLSNAVKFT  383 (495)
Q Consensus       305 i~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~-~~~~v~~D~~~L~qvl~NLi~NAiK~T  383 (495)
T Consensus       765 InDILD~SKIEaG~l~l~~~~~~l~~li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT  844 (1197)
T PRK09959        765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFT  844 (1197)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             88889998985388621452017999999999999999996796899955898751352678899999999987537468


Q ss_pred             CCCCEEEEEEEEE--CCC--EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf             7988799999997--698--599999878997898785442265231577767899988805899999999619859999
Q gi|254780701|r  384 AIGGRVHVTVGWT--SGR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR  459 (495)
Q Consensus       384 ~~gG~V~v~~~~~--~~~--~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~  459 (495)
T Consensus       845 ~~-G~V~i~~~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~pF~Q~s~--~r~~~GTGLGLaI~k~LvelMgG~I~v~  921 (1197)
T PRK09959        845 TE-GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLE  921 (1197)
T ss_pred             CC-CEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             79-78999999865179806999999977878898899753678624778--8788984835999999999879928999


Q ss_pred             EECCCCEEEEEEECHHHCC
Q ss_conf             7989952988984724707
Q gi|254780701|r  460 SKLREGVEVIAILPNTRVL  478 (495)
Q Consensus       460 S~~G~Gt~f~v~LP~~~~~  478 (495)
T Consensus       922 S~~G~GS~F~~~lpl~~~~  940 (1197)
T PRK09959        922 SHPGIGTTFTITIPVEISQ  940 (1197)
T ss_pred             ECCCCCEEEEEEEECCCCC
T ss_conf             3599944999999756455