HHsearch alignment for GI: 254780701 and conserved domain: PRK10547
>PRK10547 chemotaxis protein CheA; Provisional.
Probab=99.59 E-value=1.1e-12 Score=127.49 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHH---HHHH
Q ss_conf 9999999999999987422001565310119999999999999999731122100036761010479899998---8777
Q gi|254780701|r 298 GQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQ---VILN 374 (495)
Q Consensus 298 ~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~q---vl~N 374 (495)
T Consensus 315 ~~~l~r~~~dL------q~~vm~~RM--vP~~~lf~r~~R~VRdlar~~gK~V~L~i~G~--dtelDr~Ile~L~dPL~H 384 (662)
T PRK10547 315 MGQLQRNARDL------QESVMSIRM--MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS--STELDKSLIERIIDPLTH 384 (662)
T ss_pred HHHHHHHHHHH------HHHHHHHCC--EEHHHHHHHHHHHHHHHHHHHCCEEEEEEECC--CEEEHHHHHHHHHHHHHH
T ss_conf 99999999999------999998625--21899888878999999998698259999668--677719999988879999
Q ss_pred HHHHHHHCC------------CCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------------------HHHC
Q ss_conf 655688606------------7988799999997698599999878997898785---------------------4422
Q gi|254780701|r 375 LLSNAVKFT------------AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEI---------------------PTVL 421 (495)
Q Consensus 375 Li~NAiK~T------------~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~---------------------~~iF 421 (495)
T Consensus 385 LlRNAvDHGIE~peeR~a~GKp~~G~I~l~a~~-~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e~lsd~e~~~LIF 463 (662)
T PRK10547 385 LVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH-QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDDEVGMLIF 463 (662)
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEEEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 987424304899889987599972799999998-5999999998189998999999999984999853389999999971
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 422 TSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 422 ~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
T Consensus 464 ~PGFSTa~~V-t~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPlT 516 (662)
T PRK10547 464 APGFSTAEQV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLT 516 (662)
T ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCH
T ss_conf 7998623223-5688866468999999998299899996089807999978878