HHsearch alignment for GI: 254780701 and conserved domain: PRK10618
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.
Probab=99.89 E-value=8.1e-20 Score=188.79 Aligned_cols=235 Identities=18% Similarity=0.296 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999889999977642013899999999985033687893789999999999999999999999999
Q gi|254780701|r 232 KSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 (495)
Q Consensus 232 ~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdl 311 (495)
T Consensus 433 nKkLq~AqreYeKN~qaRk~~l~Ni~~el~~Pl~~l~~~~~~l~~~~-----~---~~~l~~L~~qs~~i~~lidnI~Ll 504 (881)
T PRK10618 433 NKKLQQAQREYEKNQQARRAFLQNIGDELKEPVQSLAELAAQLNAPE-----S---QQLLKQLAEQADVLVRLIDNIQLA 504 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999866999999999999998778999999999862524-----4---679999999999999999889999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 874220015653101199999999999999997311221000367610-1047989999887776556886067988799
Q gi|254780701|r 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 (495)
Q Consensus 312 srleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~ 390 (495)
T Consensus 505 n~LEsq~W~~~~~~Fsl~~Lid~~l~e~Lp~i~~KGL~L~~hn~l~~~~~~~gD~~aLrkil~lLl~YaitTT~~-GKIt 583 (881)
T PRK10618 505 NMLENDEWKSEQTLFSLQDLIDEVVPEVLPAIKRKGLQLLIHNHLKANDMRRGDRDALRKILLLLLQYAVTTTQY-GKIT 583 (881)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCC-CEEE
T ss_conf 888605676567710499999999998768987427033323479889970478999999999999888111445-2599
Q ss_pred EEEEEECC--CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 99999769--8599999878997898785442265231577767899988805899999999619859999798995298
Q gi|254780701|r 391 VTVGWTSG--RGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 391 v~~~~~~~--~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f 468 (495)
T Consensus 584 l~v~~~~~~~~~l~i~i~DTG~Gls~~El~Nl~~PFl~~t~~-Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y 662 (881)
T PRK10618 584 LEVDQDESSEERLTFRILDTGEGVSIHEIDNLHFPFLNQTQG-DRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRY 662 (881)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCHHH-HHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCE
T ss_conf 998258777863899995478887888885537977683122-1113788729999999999848967884156776647
Q ss_pred EEEECHHH
Q ss_conf 89847247
Q gi|254780701|r 469 IAILPNTR 476 (495)
Q Consensus 469 ~v~LP~~~ 476 (495)
T Consensus 663 ~i~lp~~~ 670 (881)
T PRK10618 663 SVHLKMLP 670 (881)
T ss_pred EEEECCCC
T ss_conf 99842676