HHsearch alignment for GI: 254780701 and conserved domain: PRK10815
>PRK10815 sensor protein PhoQ; Provisional.
Probab=100.00 E-value=4.3e-41 Score=371.17 Aligned_cols=240 Identities=19% Similarity=0.224 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999889999977642013899999999985033687893789999999999999999999
Q gi|254780701|r 226 AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 (495)
Q Consensus 226 ~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li 305 (495)
T Consensus 243 ~Ei~~La~~fN~ml~rl~~~~~rqr~F~adaSHELRTPLa~l~~~le~L~~~~~---~~~---~~~~~~le~i~Rl~~li 316 (484)
T PRK10815 243 RELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRTEKM---SVS---DAEPVMLEQISRISQQI 316 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCC---CHH---HHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999854436434569999999999746998---878---99999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999987422001565310119999999999999999731122100036761010479899998877765568860679
Q gi|254780701|r 306 NEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAI 385 (495)
Q Consensus 306 ~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~ 385 (495)
T Consensus 317 ~~lL~~a~~~~~~~~~~~e~~~l~~ll~~l~~~l~~~~~~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldNAikys~~ 395 (484)
T PRK10815 317 GYYLHRASMRGEGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDNACKYCLE 395 (484)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999987038986302555669999999999999999964977999648760-79557899999999999999972888
Q ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 88799999997698599999878997898785442265231577767899988805899999999619859999798995
Q gi|254780701|r 386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG 465 (495)
Q Consensus 386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~G 465 (495)
T Consensus 396 ~--v~I~~~~-~~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~r----~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG 468 (484)
T PRK10815 396 F--VEISARQ-TDEHLHIVVEDDGPGIPESKRELIFDRGQRVDTLR----PGQGVGLAVAREITEQYEGKIVASESPLGG 468 (484)
T ss_pred C--EEEEEEE-ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 6--7999999-69999999997399999899986246887799999----985767999999999889989999569992
Q ss_pred EEEEEEECHHHCCC
Q ss_conf 29889847247074
Q gi|254780701|r 466 VEVIAILPNTRVLN 479 (495)
Q Consensus 466 t~f~v~LP~~~~~~ 479 (495)
T Consensus 469 ~~f~I~F~~~~~~p 482 (484)
T PRK10815 469 ARMEVIFGRQHSTP 482 (484)
T ss_pred EEEEEEECCCCCCC
T ss_conf 48999973877899