HHsearch alignment for GI: 254780701 and conserved domain: PRK10841

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional.
Probab=100.00  E-value=0  Score=553.29  Aligned_cols=245  Identities=27%  Similarity=0.413  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999998899999776420138999999999850336878937899999999999999999999
Q gi|254780701|r  227 ELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLIN  306 (495)
Q Consensus       227 ~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~  306 (495)
T Consensus       448 ar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEIRTPLnGIlG~lELL~~t~L----~~~Qr~~l~tI~~Ss~~LL~lIN  523 (947)
T PRK10841        448 ARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL----PKGVDRLVTAMNNSSSLLLKIIS  523 (947)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999999999999999899875856436128999999999807999----98999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999874220015653101199999999999999997311221000367610-10479899998877765568860679
Q gi|254780701|r  307 EILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKFTAI  385 (495)
Q Consensus       307 ~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~T~~  385 (495)
T Consensus       524 DILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A~~K~L~L~~~idp~vP~~v~GDp~RLrQIL~NLLsNAIKFT~~  603 (947)
T PRK10841        524 DILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVKKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDT  603 (947)
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHEEECCC
T ss_conf             99999988049847985256899999999999999999739879999799999658606889999999988777466799


Q ss_pred             CCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             88799999997698599999878997898785442265231577767899988805899999999619859999798995
Q gi|254780701|r  386 GGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREG  465 (495)
Q Consensus       386 gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~G  465 (495)
T Consensus       604 -G~I~L~V~~-~~~~L~fsV~DTGIGIsee~~~~LFepF~QaD~S~tR~yGGTGLGLAI~krLVeLMGG~I~VeSe~G~G  681 (947)
T PRK10841        604 -GCIILHVRV-DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMG  681 (947)
T ss_pred             -CEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf             -589999998-499999999982899899999988471115787543457998741999999999759958999169980


Q ss_pred             EEEEEEECHHHC
Q ss_conf             298898472470
Q gi|254780701|r  466 VEVIAILPNTRV  477 (495)
Q Consensus       466 t~f~v~LP~~~~  477 (495)
T Consensus       682 StFtf~LPL~~~  693 (947)
T PRK10841        682 SQFTVRIPLYGA  693 (947)
T ss_pred             EEEEEEEECCCC
T ss_conf             799999756433