HHsearch alignment for GI: 254780701 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00 E-value=2.6e-31 Score=287.33 Aligned_cols=195 Identities=24% Similarity=0.372 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
T Consensus 337 ~~~e~Lra~sHE~~n~L~~I~Gll~l~~--------~d~~~~~i~---~~~~~~~~~~~~l~~~i~----------~p-- 393 (541)
T PRK11086 337 NYADALRAQSHEFMNKLHVILGLLHLKS--------YDQLEDYIL---KTANNYQEEIGSLLGKIK----------SP-- 393 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHH---HHHHHHHHHHHHHHHHCC----------CH--
T ss_conf 9999987611666405799988886430--------899999999---999999999999998611----------68--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHH---HHHHHHHHHHHHHHHCCC--CCCEEEEEEEEECCCEEE
Q ss_conf 999999999999999973112210003676101047989---999887776556886067--988799999997698599
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEK---GMRQVILNLLSNAVKFTA--IGGRVHVTVGWTSGRGQY 402 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~---~L~qvl~NLi~NAiK~T~--~gG~V~v~~~~~~~~~~~ 402 (495)
T Consensus 394 ---~la~~Llgk~~~a~E~gi~L~i~~~~~l~~~-~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~-~~~~l~ 468 (541)
T PRK11086 394 ---VIAGFLLGKISRARELGITLIISEDSQLPDS-DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY-RHGWLH 468 (541)
T ss_pred ---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEE
T ss_conf ---8899999889999966985997067767788-86466657999999999999997316899679999998-899899
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf 99987899789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 403 i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
T Consensus 469 i~V~D~G~GI~~e~~~~IFerg~S------tK~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~ 536 (541)
T PRK11086 469 IEVSDDGPGIAPEEIEAIFDKGYS------TKGSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDG 536 (541)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCC------CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 999977988597799887179874------18999110399999999985998999966999379999960687