HHsearch alignment for GI: 254780701 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=100.00 E-value=0 Score=528.60 Aligned_cols=248 Identities=35% Similarity=0.562 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998899999776420138999999999850336878937899999999999999999
Q gi|254780701|r 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLN 303 (495)
Q Consensus 224 l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~ 303 (495)
T Consensus 268 ~leq~e~qn~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~ 343 (920)
T PRK11107 268 TLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLA 343 (920)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887899999999999999999999996648654219999999999856999----99999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCH-HCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999874220015653101199999999999999997311221000367610-10479899998877765568860
Q gi|254780701|r 304 LINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVKF 382 (495)
Q Consensus 304 Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~-~v~~D~~~L~qvl~NLi~NAiK~ 382 (495)
T Consensus 344 lIndiLD~SkiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKf 423 (920)
T PRK11107 344 IINDILDFSKLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKF 423 (920)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998459836740167899999999999999999739879999789997306538999999999999999971
Q ss_pred CCCCCEEEEEEEEEC--CC--EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 679887999999976--98--59999987899789878544226523157776789998880589999999961985999
Q gi|254780701|r 383 TAIGGRVHVTVGWTS--GR--GQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLI 458 (495)
Q Consensus 383 T~~gG~V~v~~~~~~--~~--~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v 458 (495)
T Consensus 424 T~~-G~I~v~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v 502 (920)
T PRK11107 424 TES-GNIDILVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISF 502 (920)
T ss_pred CCC-CCEEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 889-9379999999647984899999999705869999997854201567654456798774299999999980991799
Q ss_pred EEECCCCEEEEEEECHHH
Q ss_conf 979899529889847247
Q gi|254780701|r 459 RSKLREGVEVIAILPNTR 476 (495)
Q Consensus 459 ~S~~G~Gt~f~v~LP~~~ 476 (495)
T Consensus 503 ~S~~g~GS~F~Ftlpl~~ 520 (920)
T PRK11107 503 HSQPNRGSTFWFHLPLDL 520 (920)
T ss_pred EECCCCCEEEEEEEECCC
T ss_conf 954899748999998047