HHsearch alignment for GI: 254780701 and conserved domain: PRK11644
>PRK11644 sensory histidine kinase UhpB; Provisional.
Probab=99.77 E-value=1.9e-11 Score=116.97 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999988999997764201389999999998503368789378999999999999999
Q gi|254780701|r 222 DDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHL 301 (495)
Q Consensus 222 ~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L 301 (495)
T Consensus 280 ~~L~~eL~~nr~LsrqLI-~aQE~--ERr~IARELHDEiGQ~LTAIr~~a~~i~r~~---~~~~~~~~~a~~I~~l~~~i 353 (497)
T PRK11644 280 QSLQKELARNRHLAERLL-ETEES--VRRDVARELHDEIGQTITAIRTQASIVKRLA---ADNASVKQSGQLIEQLSLGV 353 (497)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999-97699--9999999700034059999999999986326---99766899999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999874220015653101199999999999999997311221000367610104-798999988777655688
Q gi|254780701|r 302 LNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVW-ADEKGMRQVILNLLSNAV 380 (495)
Q Consensus 302 ~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~-~D~~~L~qvl~NLi~NAi 380 (495)
T Consensus 354 ~~~vR~ll~~LR------P~~LDdLGL~~AL~~Lv~e~~~~--~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~ 425 (497)
T PRK11644 354 YDAVRRLLGRLR------PRQLDDLTLEQAIRSLMRELELE--DRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIV 425 (497)
T ss_pred HHHHHHHHHHCC------CCCHHHCCHHHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998609------03111248999999999987652--5795599982687667982468899999999999999
Q ss_pred HCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 60679887999999976985999998789978987854422652315777678999888058999999996198599997
Q gi|254780701|r 381 KFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRS 460 (495)
Q Consensus 381 K~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S 460 (495)
T Consensus 426 KHA~A-~~V~I~L~~-~~~~l~L~I~DDG~Gf~~~~-----------------~--~~G~GL~GMrERV~aLGG~l~I~S 484 (497)
T PRK11644 426 KHADA-SAVTIQGWQ-QDERLMLVIEDNGSGLPPGS-----------------G--QQGFGLRGMQERVSALGGTLTISC 484 (497)
T ss_pred HCCCC-CEEEEEEEE-CCCEEEEEEEECCCCCCCCC-----------------C--CCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf 73788-769999997-69989999988998989898-----------------9--999892679999997499799982
Q ss_pred ECCCCEEEEEEECH
Q ss_conf 98995298898472
Q gi|254780701|r 461 KLREGVEVIAILPN 474 (495)
Q Consensus 461 ~~G~Gt~f~v~LP~ 474 (495)
T Consensus 485 ~~--GT~I~V~LP~ 496 (497)
T PRK11644 485 TH--GTRLSVTLPQ 496 (497)
T ss_pred CC--CCEEEEECCC
T ss_conf 89--9779995899