HHsearch alignment for GI: 254780701 and conserved domain: PRK13837

>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00  E-value=2.9e-40  Score=364.09  Aligned_cols=223  Identities=26%  Similarity=0.418  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r  248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS  327 (495)
Q Consensus       248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~  327 (495)
T Consensus       452 AiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~---~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~----~~~~~~vd  524 (831)
T PRK13837        452 AVGTLASGIAHNFNNILGAILGYAEMALNKLR---RHSRARRHIDEIISSGDRARLIIDQILTFGRKG----ERRTKPFS  524 (831)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCEEC
T ss_conf             99999989999870089999999999862069---984778999999999999999999999985899----99771774


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-----------
Q ss_conf             999999999999999973112210003676101047989999887776556886067988799999997-----------
Q gi|254780701|r  328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT-----------  396 (495)
Q Consensus       328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~-----------  396 (495)
T Consensus       525 l~~lv~e~~~llr~~-l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~~  603 (831)
T PRK13837        525 LSELVTEIAPLLRVS-LPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAHG  603 (831)
T ss_pred             HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCCC
T ss_conf             999999999999987-5898699997189885388879999999999999999976799869999855533632321157


Q ss_pred             ---CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf             ---69859999987899789878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r  397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP  473 (495)
Q Consensus       397 ---~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP  473 (495)
T Consensus       604 ~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFF------TTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP  677 (831)
T PRK13837        604 TAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFF------TTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLP  677 (831)
T ss_pred             CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEE
T ss_conf             78998989999986799989899966048986------788998874699999999986986999726999718999831


Q ss_pred             HHHCCCCCCCC
Q ss_conf             24707469987
Q gi|254780701|r  474 NTRVLNFIPED  484 (495)
Q Consensus       474 ~~~~~~~~p~~  484 (495)
T Consensus       678 ~~~~~~~~~~~  688 (831)
T PRK13837        678 PSSKVPVAPDA  688 (831)
T ss_pred             CCCCCCCCCCC
T ss_conf             79887778776