HHsearch alignment for GI: 254780701 and conserved domain: PRK13837
>PRK13837 two-component VirA-like sensor kinase; Provisional.
Probab=100.00 E-value=2.9e-40 Score=364.09 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999776420138999999999850336878937899999999999999999999999998742200156531011
Q gi|254780701|r 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327 (495)
Q Consensus 248 ~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~ 327 (495)
T Consensus 452 AiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~---~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~FSR~~----~~~~~~vd 524 (831)
T PRK13837 452 AVGTLASGIAHNFNNILGAILGYAEMALNKLR---RHSRARRHIDEIISSGDRARLIIDQILTFGRKG----ERRTKPFS 524 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCEEC
T ss_conf 99999989999870089999999999862069---984778999999999999999999999985899----99771774
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE-----------
Q ss_conf 999999999999999973112210003676101047989999887776556886067988799999997-----------
Q gi|254780701|r 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWT----------- 396 (495)
Q Consensus 328 L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~----------- 396 (495)
T Consensus 525 l~~lv~e~~~llr~~-l~~~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM~~gG~l~I~~~~~~~~~~~~~~~~ 603 (831)
T PRK13837 525 LSELVTEIAPLLRVS-LPPTVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAMDENGRVDIRLSRVDLRKPKVLAHG 603 (831)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHCCC
T ss_conf 999999999999987-5898699997189885388879999999999999999976799869999855533632321157
Q ss_pred ---CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEC
Q ss_conf ---69859999987899789878544226523157776789998880589999999961985999979899529889847
Q gi|254780701|r 397 ---SGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 (495)
Q Consensus 397 ---~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP 473 (495)
T Consensus 604 ~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFF------TTK~~GTGLGLAvV~gIV~~hgG~I~V~S~pG~GTtF~v~LP 677 (831)
T PRK13837 604 TAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFF------TTRARGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLP 677 (831)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCC------CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEE
T ss_conf 78998989999986799989899966048986------788998874699999999986986999726999718999831
Q ss_pred HHHCCCCCCCC
Q ss_conf 24707469987
Q gi|254780701|r 474 NTRVLNFIPED 484 (495)
Q Consensus 474 ~~~~~~~~p~~ 484 (495)
T Consensus 678 ~~~~~~~~~~~ 688 (831)
T PRK13837 678 PSSKVPVAPDA 688 (831)
T ss_pred CCCCCCCCCCC
T ss_conf 79887778776