HHsearch alignment for GI: 254780701 and conserved domain: TIGR00585
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=97.52 E-value=0.00032 Score=55.08 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 99988777655688606798879999999769859999987899789878544226523
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFG 425 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~ 425 (495)
T Consensus 22 ~p~~vVKELvENSLDAG-A-t~I~v~~~--~gG~~~I~V~DNG~Gi~~~d~~~~~~~ha 76 (367)
T TIGR00585 22 RPASVVKELVENSLDAG-A-TKIEVEIE--EGGLKLIEVSDNGSGIDKEDLELACERHA 76 (367)
T ss_pred HHHHHHHHHHHHHHCCC-C-CEEEEEEE--ECCEEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 27999999887312148-8-58999996--26535899997785677777998612357