HHsearch alignment for GI: 254780701 and conserved domain: smart00387
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.91 E-value=3.4e-23 Score=217.73 Aligned_cols=111 Identities=34% Similarity=0.579 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 79899998877765568860679887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 (495)
Q Consensus 363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL 442 (495)
T Consensus 1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL 78 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLER-DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR-SRKIGGTGLGL 78 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHCCCCCEECCCC-CCCCCCCCHHH
T ss_conf 988999999999999999967799789999998-3999999999889973989996426994777999-98879766489
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 999999996198599997989952988984724
Q gi|254780701|r 443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
T Consensus 79 ~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~ 111 (111)
T smart00387 79 SIVKKLVELHGGEISVESEPGGGTTFTITLPLE 111 (111)
T ss_pred HHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 999999998799899996599818999999819