HHsearch alignment for GI: 254780701 and conserved domain: smart00387

>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.91  E-value=3.4e-23  Score=217.73  Aligned_cols=111  Identities=34%  Similarity=0.579  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             79899998877765568860679887999999976985999998789978987854422652315777678999888058
Q gi|254780701|r  363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL  442 (495)
Q Consensus       363 ~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGL  442 (495)
T Consensus         1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~-~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL   78 (111)
T smart00387        1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLER-DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR-SRKIGGTGLGL   78 (111)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHCCCCCEECCCC-CCCCCCCCHHH
T ss_conf             988999999999999999967799789999998-3999999999889973989996426994777999-98879766489


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf             999999996198599997989952988984724
Q gi|254780701|r  443 PIAQSIMANHGGQFLIRSKLREGVEVIAILPNT  475 (495)
Q Consensus       443 aIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~  475 (495)
T Consensus        79 ~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~  111 (111)
T smart00387       79 SIVKKLVELHGGEISVESEPGGGTTFTITLPLE  111 (111)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             999999998799899996599818999999819