HHsearch alignment for GI: 254780701 and conserved domain: smart00388

>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.

Probab=98.94  E-value=4.9e-09  Score=96.38  Aligned_cols=65  Identities=57%  Similarity=0.853  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999977642013899999999985033687893789999999999999999999999999874220
Q gi|254780701|r  249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG  317 (495)
Q Consensus       249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag  317 (495)
T Consensus         2 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~----~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~   66 (66)
T smart00388        2 KREFLANLSHELRTPLTAIRGYLELLEDTE----LSEEQREYLETILRSAERLLRLINDLLDLSRIEAG   66 (66)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             889999976987081888999988653027----99999999998899999999999999999873699