HHsearch results for GI: 254780701 and protein with PDBid: 1pvg_A
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.50 E-value=0.0033 Score=44.60 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHCCCCC---CEEEEEEEEECCCEEEEEEEECCCCCCHHH--------HHHHCCCCCCCCC----CC
Q ss_conf 99988777655688606798---879999999769859999987899789878--------5442265231577----76
Q gi|254780701|r 367 GMRQVILNLLSNAVKFTAIG---GRVHVTVGWTSGRGQYISIKDNGPGIAEGE--------IPTVLTSFGQGSI----AI 431 (495)
Q Consensus 367 ~L~qvl~NLi~NAiK~T~~g---G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~--------~~~iF~~F~r~~~----~~ 431 (495)
-|.+++.-+|.||+.-.-+| ..|.|.+. .+++ .|+|.|+|.|||-+. .+-||....-+++ ++
T Consensus 64 Gl~~l~~EildNavDe~~~g~~~~~I~V~i~-~~dg--sisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~y 140 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 140 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred EEEEEEEEEEECHHHHHHCCCCCCEEEEEEE-CCCC--EEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 0024656899980247651688877999996-7998--899996990146104366786411578877403554457753
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 789998880589999999961
Q gi|254780701|r 432 KSAEQGVGLGLPIAQSIMANH 452 (495)
Q Consensus 432 ~~~~~GtGLGLaIvk~lve~h 452 (495)
+...+.+|+|.++|-.+-+..
T Consensus 141 k~SGGlhGvGasvvNalS~~f 161 (418)
T 1pvg_A 141 KVTGGRNGYGAKLCNIFSTEF 161 (418)
T ss_dssp CCCSCCSSCHHHHHHHTEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHH
T ss_conf 040787552640227663565