HHsearch results for GI: 254780701 and protein with PDBid: 1r62_A
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=99.95 E-value=1.9e-27 Score=252.37 Aligned_cols=150 Identities=25% Similarity=0.383 Sum_probs=128.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE---
Q ss_conf 15653101199999999999999997311221000367610104798999988777655688606798879999999---
Q gi|254780701|r 319 YELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW--- 395 (495)
Q Consensus 319 ~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~--- 395 (495)
++...+++++.+++++++..++... .+++++..+.+++.|.+.+|+.+|+||+.||++||+||++.++.+......
T Consensus 1 ~P~~k~~~nl~evi~~~~~l~~~~~-~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~ 79 (160)
T 1r62_A 1 LPGTRVTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ----CEEECHHHHHHHHHHHHTTTC-CTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 9998678889999999999999875-599899998399997799889999999999999999850368961688641023
Q ss_pred -------ECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf -------7698599999878997898785442265231577767899988805899999999619859999798995298
Q gi|254780701|r 396 -------TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEV 468 (495)
Q Consensus 396 -------~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f 468 (495)
..+..+.|+|+|+|+|||+++++++|+|||+. +.+|+||||+|||+|++.|||+|+++|++| ||+|
T Consensus 80 ~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~t~------k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F 152 (160)
T 1r62_A 80 QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSG------REGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEF 152 (160)
T ss_dssp EEEETTEEEEEEEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEE
T ss_pred EEEEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCEEC------CCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEE
T ss_conf 034302356846899978788977989999727872204------889986619999999998699899999489-7899
Q ss_pred EEEECHHH
Q ss_conf 89847247
Q gi|254780701|r 469 IAILPNTR 476 (495)
Q Consensus 469 ~v~LP~~~ 476 (495)
+++||..+
T Consensus 153 ~i~lPl~~ 160 (160)
T 1r62_A 153 SVYLPIRK 160 (160)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
T ss_conf 99998219