HHsearch results for GI: 254780701 and protein with PDBid: 1ysr_A
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.97 E-value=9.2e-30 Score=272.19 Aligned_cols=147 Identities=25% Similarity=0.379 Sum_probs=130.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCE
Q ss_conf 65310119999999999999999731122100036761010479899998877765568860679887999999976985
Q gi|254780701|r 321 LSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRG 400 (495)
Q Consensus 321 l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~ 400 (495)
.+.+|||+.+++++++..+...+..+++++. .++ .+.+.+|+.+|+|++.||++||+||++. +.|.|++.. .++.
T Consensus 3 ~d~~pvdl~~li~~~~~~~~~~~~~~~i~~~--~~~-~~~v~~d~~~l~~vl~NLl~NAiky~~~-~~I~i~~~~-~~~~ 77 (150)
T 1ysr_A 3 DDHVPVDITDLLDRAAHDAARIYPDLDVSLV--PSP-TCIIVGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVS-SRAG 77 (150)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHSTTCEEEEC--SCC-CCEEEECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEE-ETTE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE--CCC-CCEEEECHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE-ECCE
T ss_conf 8881508999999999999987379868997--699-9689989999999999999999974899-789999998-0999
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHH
Q ss_conf 999998789978987854422652315777678999888058999999996198599997989952988984724
Q gi|254780701|r 401 QYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNT 475 (495)
Q Consensus 401 ~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~ 475 (495)
+.|+|+|+|+|||++++++||+||||++++ +.+|+||||+|||+++++|||+|+++|.+|+||+|+++||+.
T Consensus 78 v~i~V~D~G~GI~~~~~~~iF~~F~r~~~~---~~~G~GLGL~i~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~~ 149 (150)
T 1ysr_A 78 VEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp EEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 999999848797989999855763417999---989607799999999998599899996699816999999849