HHsearch results for GI: 254780701 and protein with PDBid: 3a0r_A
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=4e-42 Score=378.19 Aligned_cols=217 Identities=28% Similarity=0.428 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99988999997764201389999999998503368789378999999999999999999999999987422001565310
Q gi|254780701|r 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESA 325 (495)
Q Consensus 246 ~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~ 325 (495)
..++++|++++||||||||++|.|++++|..... +++..+++++.|.++++||..+|+++|+++|. +..++.++
T Consensus 129 ~~~l~~~~~~iaHelrnPL~~I~~~~~~l~~~~~---~~~~~~~~l~~i~~~~~rl~~li~~ll~~~~~---~~~~~~~~ 202 (349)
T 3a0r_A 129 LSILGEMTARVAHEIRNPITIIGGFIMRMKKHLD---DPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTE 202 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS---CSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCC
T ss_conf 9999999997655502426799999999971479---97999999999999999999999889987344---33356676
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEE
Q ss_conf 11999999999999999973112210003676101047989999887776556886067988799999997698599999
Q gi|254780701|r 326 ISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISI 405 (495)
Q Consensus 326 v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V 405 (495)
+|+.+++++++..+.+.+..+++++..+.++..+.+++|+.+|+||+.||++||+||+++||.|+|+++. .++.++|+|
T Consensus 203 ~~l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~g~I~v~~~~-~~~~v~i~V 281 (349)
T 3a0r_A 203 FNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSED-MYTKVRVSV 281 (349)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEE-ETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEE
T ss_conf 5799999999999999998669189997278870899857899999999999999976799669999995-354899999
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf 878997898785442265231577767899988805899999999-61985999979899529889847247
Q gi|254780701|r 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMA-NHGGQFLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve-~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
+|+|+|||++++++||+|||+. +.+|+||||+|||+|++ .|||.|+++|. |+||+|+++||.++
T Consensus 282 ~D~G~Gi~~~~~~~iFepF~tt------k~~GtGLGL~i~k~iv~~~hgG~i~~~s~-~~Gt~F~i~lP~~~ 346 (349)
T 3a0r_A 282 WNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPKTP 346 (349)
T ss_dssp EEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC-SSEEEEEEEEESCT
T ss_pred EECCCCCCHHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECCCC
T ss_conf 9789998989998726996318------98973557999999999848998999977-99779999935998