HHsearch results for GI: 254780701 and protein with PDBid: 3d36_A
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=6.7e-43 Score=384.79 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 88999997764201389999999998503368789378999999999999999999999999987422001565310119
Q gi|254780701|r 249 KSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 (495)
Q Consensus 249 Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L 328 (495)
-.+|.|++||||||||++|.||+++|.++.. .++..+++++.|.++.++|..+++++|+++|.+.+ +.+++++
T Consensus 14 lg~l~a~isHElrtPLt~I~~~~~ll~~~~~---~~~~~~~~~~~i~~~~~rl~~li~~ll~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 14 VTHLAASISHEIRNPLTAARGFIQLIEEQPL---AADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHGGGCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCEEECH
T ss_conf 9999999999986799999999999977899---86999999999999999999999999987276878----9716649
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEEC
Q ss_conf 99999999999999973112210003676101047989999887776556886067988799999997698599999878
Q gi|254780701|r 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDN 408 (495)
Q Consensus 329 ~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T~~gG~V~v~~~~~~~~~~~i~V~Dt 408 (495)
..+++++++.+.+.+..+++.+....++ ..+++|+.+|+||+.||++||+||+|+||.|.|.+.. +++.+.|+|+|+
T Consensus 87 ~~~i~~~~~~~~~~~~~~~i~~~~~~~~--~~v~~d~~~l~qvl~NLl~NAik~~~~~~~i~i~~~~-~~~~v~i~V~D~ 163 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP--FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSI-DNGRVLIRIADT 163 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEE-ETTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCC--CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-ECCEEEEEEEEC
T ss_conf 9999999999999975168599950798--4699779999999999999999867689768999996-088899999986
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECHHH
Q ss_conf 99789878544226523157776789998880589999999961985999979899529889847247
Q gi|254780701|r 409 GPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 409 G~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
|+|||++++++||+|||+.. ..+|+||||+|||+|++.|||+|+++|++|+||+|+++||.+.
T Consensus 164 G~GI~~e~~~~iFepF~~tk-----~~~GtGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~lP~~~ 226 (244)
T 3d36_A 164 GVGMTKEQLERLGEPYFTTK-----GVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS 226 (244)
T ss_dssp SSCCCHHHHHHTTSTTCCSS-----GGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred CCCCCHHHHHHHCCCCCCCC-----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 88989899998669986589-----9996476899999999988997999966999669999987899