RPSBLAST alignment for GI: 254780701 and conserved domain: TIGR03785
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase. Length = 703
Score = 54.0 bits (130), Expect = 8e-08
Identities = 67/330 (20%), Positives = 141/330 (42%), Gaps = 40/330 (12%)
Query: 170 VVVALSTQAIMSMH------VLDISLAGMLATALSFFTYITYHLFKSNVKILSCQAEK-- 221
V+ +T I ++ + ++ LA M L+ F + ++ ++ LS AE
Sbjct: 388 VIAEQTTNGIRTLRNSALEKLFNVILAIMSIGTLALFGFASW--ISWRIRRLSDDAEAAI 445
Query: 222 DD---LIAELEVAKS---LSDETRKRAEEENLAK----SRFLASMS----HELRTPLNAI 267
D + + ++S + D +R A+ +A+ + +L +MS HELRTP+ A+
Sbjct: 446 DSQGRISGAIPASRSRDEIGDLSRSFAQM--VARLRQYTHYLENMSSRLSHELRTPV-AV 502
Query: 268 LGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAIS 327
+ S +E + L E ++Y+ + L ++N + + +R+E
Sbjct: 503 VRSS--LENLELQALEQEK-QKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVEDFD 559
Query: 328 LIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG 387
L +++ C+ Q+ + E+ P + + Q++ L+ NA +F+ G
Sbjct: 560 LSEVLSGCMQGYQMTYPPQRFELNIPETPLVMRGSPELIA--QMLDKLVDNAREFSPEDG 617
Query: 388 RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG--VGLGLPI 444
+ V + + + +++ + GP + E + S S+ + A+ +GLGL I
Sbjct: 618 LIEVGL--SQNKSHALLTVSNEGPPLPEDMGEQLFDSM--VSVRDQGAQDQPHLGLGLYI 673
Query: 445 AQSIMANHGGQFLIRSKLR-EGVEVIAILP 473
+ I H G+ ++ + +GV LP
Sbjct: 674 VRLIADFHQGRIQAENRQQNDGVVFRISLP 703