RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] (495 letters) >gnl|CDD|30987 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]. Length = 336 Score = 158 bits (399), Expect = 4e-39 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 14/334 (4%) Query: 142 SATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFT 201 + L + L++ +L + L+ + L + +L L +L Sbjct: 7 ALVLTLLLALFVPLALLLIFLPSLAVARNELLLLLLLTLLAALLVALLLLLLLLRRLLRP 66 Query: 202 YITYHLFKSNVKILSCQAEKDDLIAEL-EVAKSLSDETRKRAEEENLAKSRFLASMSHEL 260 + + + + L +EL +A +L++ + AK FLA++SHEL Sbjct: 67 LLLLADAANALAAGLTRLVLASLGSELASLAHALNELLERLERLLRRAKREFLANISHEL 126 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG-RY 319 RTPL AI G E++ + P +E + I + LL L+N++LDLSR+EAG + Sbjct: 127 RTPLTAIRGLLELLLEGLLDPQ-----RELLEIIEEEAERLLRLVNDLLDLSRLEAGTKL 181 Query: 320 ELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +L + L +++ E + +L AQEK IE+ P L V D + +RQV++NLLSNA Sbjct: 182 KLLLELVDLAELLEEVVRLLAPLAQEKGIEL-AVDLPELPYVLGDPERLRQVLVNLLSNA 240 Query: 380 VKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVG 439 +K+T GG + ++V IS++D GPGI E E+ + F + + G G Sbjct: 241 IKYTP-GGEITISV-RQDDEQVTISVEDTGPGIPEEELERIFEPFFRT----DKSRSGTG 294 Query: 440 LGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 LGL I + I+ HGG + S+ +G LP Sbjct: 295 LGLAIVKRIVELHGGTISVESEPGKGTTFTIRLP 328 >gnl|CDD|32387 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]. Length = 890 Score = 134 bits (338), Expect = 7e-32 Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 7/239 (2%) Query: 235 SDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDI 294 +++ R AE E L +S LAS+SH+LRTPL AI+G +E + L L+ E E + I Sbjct: 647 AEQARLAAERERL-RSALLASISHDLRTPLTAIMGAAETL-LLDGEALSPEDRAELLSSI 704 Query: 295 HRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKI 354 + L L+ +LD++R+++G L + + ++V E + L+ R I + + Sbjct: 705 REESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTGHKIVV--SV 762 Query: 355 DPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAE 414 L + D + QV++NLL NA+K+ G + + G S+ D GPGI E Sbjct: 763 PVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERENVV-FSVIDEGPGIPE 821 Query: 415 GEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 GE+ + F +G +SA +GVGLGL I + I+ HGG + G + LP Sbjct: 822 GELERIFDKFYRG--NKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLP 878 >gnl|CDD|34607 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]. Length = 459 Score = 119 bits (299), Expect = 2e-27 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 8/242 (3%) Query: 234 LSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGD 293 L D T + E + F+A++SHELRTPL ++ + E LE + E ++ Sbjct: 212 LHDVTEQEKVERERRE--FVANVSHELRTPLTSMKSYLEA--LEEGAWEDKEIAPRFLRV 267 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 + ++ L+N++L LSR++ RY+L++ I+ + E I ++ +++ I F + Sbjct: 268 TLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETIARFVR 327 Query: 354 IDPSLSSVW--ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPG 411 P +W D M QV+ N++SNA+K++ GGR+ V+V ISI D G G Sbjct: 328 DIPK-QDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVK-QRETWVEISISDQGLG 385 Query: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAI 471 I + ++ + F + A G GLGL IA+ I+ HGG+ S+ +G Sbjct: 386 IPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFT 445 Query: 472 LP 473 LP Sbjct: 446 LP 447 >gnl|CDD|33974 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]. Length = 750 Score = 96.9 bits (241), Expect = 1e-20 Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 12/271 (4%) Query: 210 SNVKILSCQAEKDDLI-AELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAIL 268 S V+I + + ++ L A+ L+ R+ E N F SH+L+ PL I Sbjct: 485 SEVEIEAALELRKAIVGIVLRHAEELAQLRRE-LERSNAELRAFAYVASHDLQEPLRQIS 543 Query: 269 GFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISL 328 +++++ L+ E KE+I I R + LI+++L S++ G E + Sbjct: 544 NYAQLLSERYSDALDEE-AKEFITFISRLTSLMQQLIDDLLTYSKL--GLTEAPLQPTDV 600 Query: 329 IDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGR 388 +V + ++ L R + EI +I P L V AD + QV NL++NA+KF Sbjct: 601 QKVVDKVLLELSQRIADTGAEI--RIAP-LPVVAADATQLGQVFQNLIANAIKFGGPENP 657 Query: 389 -VHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + ++ S++DNG GI + F + + G GLGL I + Sbjct: 658 DIEISAERQ-EDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEY--LGTGLGLAICKK 714 Query: 448 IMANHGGQFLIRSKLREGVEVIAILPNTRVL 478 I H G+ + S EG LP Sbjct: 715 IAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 >gnl|CDD|145582 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111 Score = 93.5 bits (233), Expect = 1e-19 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 363 ADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLT 422 DE +RQV+ NLL NA+K GG + VT+ GR + I+++DNG GI ++P + Sbjct: 1 GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERDGGRLR-ITVEDNGIGIPPEDLPKIFE 59 Query: 423 SFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 F + + G GLGL I + ++ HGG + S+ G LP Sbjct: 60 PFFRTDKDSRKVG-GTGLGLSIVRKLVELHGGTITVESEPGGGTTFTFTLP 109 >gnl|CDD|33926 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]. Length = 603 Score = 88.0 bits (218), Expect = 5e-18 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 20/226 (8%) Query: 254 ASMSHELRTPLNAILGFSE--VIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDL 311 A ++HEL PL AI +++ + LE E +E + I L + I Sbjct: 389 AGIAHELNQPLAAIRTYADNARLLLERGRT---EEARENLERISA----LTERMAAITAH 441 Query: 312 SRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQV 371 + A + + +SL + + + +L+ R + +E+ + + V A+E + QV Sbjct: 442 LKSFARKSRDAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQV 501 Query: 372 ILNLLSNAVKFTAIGG----RVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQG 427 ++NLL NA+ A+ G R+ + G ++++DNGPGIA +P + F Sbjct: 502 LVNLLQNALD--AMAGQEDRRLSIRA-QREGGQVVLTVRDNGPGIAPEALPHLFEPF--- 555 Query: 428 SIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 K +G+GLGL I+Q+I + GG + + G L Sbjct: 556 -FTTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELR 600 >gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]. Length = 673 Score = 85.1 bits (210), Expect = 4e-17 Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 29/275 (10%) Query: 207 LFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLA-------SMSHE 259 L + N K S + +L AE+E + E + + L ++ LA S++HE Sbjct: 404 LQRVNEKTQSLRERNQELQAEVEERQEA--EAHLKKTQGELIQAAKLAVVGQTMTSLAHE 461 Query: 260 LRTPLNAILG--FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317 + PLNA+ FS + LE + + I ++L + +I++ R A Sbjct: 462 INQPLNAMSAYLFSARLALEEA---PSAQAATSLDKI----ENLTERMGKIVNSLRQFAR 514 Query: 318 RYELSES--AISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNL 375 + ES + L +V + +LQ + + + I++ D + V D + QV++NL Sbjct: 515 KNSSDESLQPVRLNSVVEQAWELLQTKHKRRQIKLINPTDDLM--VMGDAVSIEQVLVNL 572 Query: 376 LSNAVK-FTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSA 434 + NA+ T + + T I+I DNG G + +LT F S Sbjct: 573 IVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTT------SK 626 Query: 435 EQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVI 469 E G+GLGL I+QS+M G+ + S L + VI Sbjct: 627 EVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVI 661 >gnl|CDD|144196 pfam00512, HisKA, His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases. Length = 66 Score = 81.4 bits (202), Expect = 5e-16 Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 4/70 (5%) Query: 248 AKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINE 307 AKS FLA++SHELRTPL AI G+ E++ L+ E +EY+ I RS + LL LIN+ Sbjct: 1 AKSEFLANLSHELRTPLTAIRGYLELLL---DTELSEEQ-REYLETILRSAERLLRLIND 56 Query: 308 ILDLSRIEAG 317 +LDLSRIEAG Sbjct: 57 LLDLSRIEAG 66 >gnl|CDD|33642 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]. Length = 363 Score = 79.6 bits (196), Expect = 2e-15 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 38/253 (15%) Query: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASM-SHELRTPLNAILGFSEVIELETMGPLN 283 ++ + L E + A++ + + L +HE++ PL I G ++++E L Sbjct: 110 FHPRDMQRRLDREQTQHAQQRAV---KGLVRGLAHEIKNPLGGIRGAAQLLERA----LP 162 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAG-RYELSESAISLIDIVRECIIMLQLR 342 +E +E I L NL++ + L G R ++ I V E + L Sbjct: 163 DEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVN------IHEVLERVRALVEA 216 Query: 343 AQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH----------VT 392 N+ + + DPSL V D + QV LNL+ NA + A+GGR Sbjct: 217 EFADNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQ--ALGGRADEGGEIILRTRTG 274 Query: 393 VGWTSGRGQY-----ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 + T +Y + + DNGPG+ + + E G GLGL +AQ+ Sbjct: 275 IQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPM------VSGREGGTGLGLALAQN 328 Query: 448 IMANHGGQFLIRS 460 ++ HGG+ S Sbjct: 329 LIDQHGGKIEFDS 341 >gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.. Length = 65 Score = 78.8 bits (195), Expect = 3e-15 Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 246 NLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLI 305 AK FLA++SHELRTPL AI G E++E E L++E +EY+ I + LL LI Sbjct: 1 LQAKGEFLANVSHELRTPLTAIRGALELLEEE---LLDDEEQREYLERIREEAERLLRLI 57 Query: 306 NEILDLSR 313 N++LDLSR Sbjct: 58 NDLLDLSR 65 >gnl|CDD|28956 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins. Length = 103 Score = 77.7 bits (191), Expect = 8e-15 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 368 MRQVILNLLSNAVKFT-AIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQ 426 ++QV+LNLLSNA+K T GGR+ ++V I ++DNGPGI E ++ + F Sbjct: 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHL-EIRVEDNGPGIPEEDLERIFERFSD 59 Query: 427 GSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAIL 472 GS G GLGL I + ++ HGG+ + S+ G L Sbjct: 60 GS--RSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 >gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase [Signal transduction mechanisms]. Length = 786 Score = 73.9 bits (181), Expect = 9e-14 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 11/154 (7%) Query: 237 ETRKRAEEENLAKS--RFLASMSHELRTPLNA-ILGFSEVIELETMGPLNNETYKEYIGD 293 + E + S FLA++SHE+RTPLN +LG + + + Sbjct: 207 KKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGL-------SDTDLDSDQRLILNT 259 Query: 294 IHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQK 353 S + LL+L+N+ILDLS++E+G+ EL L ++ I +L +Q K + Sbjct: 260 DRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLD 319 Query: 354 IDPSLSSVWA-DEKGMRQVILNLLSNAVKFTAIG 386 + + DE +RQVI NL+SNA+KFT G Sbjct: 320 LSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAG 353 Score = 35.0 bits (80), Expect = 0.043 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 4/159 (2%) Query: 224 LIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLN 283 EL + + ++ A A+ FL MSH +R P + I+ ++ + + + Sbjct: 361 AREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPD 420 Query: 284 NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRA 343 + I + RS +LI D++R+ G SL++++ I + + Sbjct: 421 SGL---EIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCIS 477 Query: 344 QEKNIEIFQKIDPSLS-SVWADEKGMRQVILNLLSNAVK 381 K + +L SV DEK + Q+IL+ Sbjct: 478 LGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLAL 516 >gnl|CDD|34605 COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]. Length = 712 Score = 63.4 bits (154), Expect = 1e-10 Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 25/276 (9%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSE 272 + L+ QA ++ + D T + + A ++HE++ PL I +E Sbjct: 450 RTLNVQATREPEDNGNGYVVTFDDITDLVIAQRSAAWGDVARRIAHEIKNPLTPIQLSAE 509 Query: 273 VIELETMGPLNN--ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLID 330 + + ++ E + I R + + +++E +R+ A + E L Sbjct: 510 RLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPKLE----KSDLRA 565 Query: 331 IVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVH 390 +++E + ++ +P + AD + QV NLL NA + AI Sbjct: 566 LLKEVSFLYEIGNDHIVFAAEFGGEPLIGM--ADATLLGQVFGNLLKNAAE--AIEAVEA 621 Query: 391 VTVGWTSGRGQY--------ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGL 442 R + + DNG G L + + + E+G GLGL Sbjct: 622 EERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPY------VTTREKGTGLGL 675 Query: 443 PIAQSIMANHGGQFLIRSKLR-EGVEVIAILPNTRV 477 I + I+ HGG+ + + +G + P + Sbjct: 676 AIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPLKEL 711 >gnl|CDD|33099 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]. Length = 537 Score = 41.0 bits (96), Expect = 8e-04 Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 43/252 (17%) Query: 234 LSDETRKRAEEENLAK--SRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYI 291 E +K E+ + + L + SHE L+ ILG ++ E + +YI Sbjct: 316 DKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDA--------LDYI 367 Query: 292 GDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIF 351 Q L++ ++E + + AG L+ + RA+E + + Sbjct: 368 QQESEEQQELIDSLSEKIK-DPVLAG---------FLLGKIS--------RARELGVSL- 408 Query: 352 QKIDP-SLSSVWADEKGMRQVIL---NLLSNAVKFTAIG---GRVHVTVGWTSGRGQYIS 404 IDP S E ++ NL+ NA++ + +++ I Sbjct: 409 -IIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDE-LVIE 466 Query: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464 + D GPGI + F +G + +G+GL L + ++ GG + S+ + Sbjct: 467 VADTGPGIPPEVRDKI---FEKGVSTKNTGGRGIGLYL--VKQLVERLGGSIEVESEKGQ 521 Query: 465 GVEVIAILPNTR 476 G +P + Sbjct: 522 GTRFSIYIPKVK 533 >gnl|CDD|34223 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]. Length = 365 Score = 36.7 bits (84), Expect = 0.015 Identities = 58/337 (17%), Positives = 107/337 (31%), Gaps = 35/337 (10%) Query: 137 LTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATA 196 L + +L L + LS L + V + I+ + +L +LA Sbjct: 63 LILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALF 122 Query: 197 LSFFTYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASM 256 L + L + + E+ L A L + + EE N S+ Sbjct: 123 LLLLALVLATLIAILLLLEGVIRERAKLKALLAERLERALIELEELEERNRIARDLHDSV 182 Query: 257 SHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 L AI ++ L + E +E + +I + + L + ++ R Sbjct: 183 GQSLT----AISMLLALLLLLADE--DAEKAQEELKEIEKLLREALQEVRALVRDLR--- 233 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLL 376 + + L++ +R + + R L E + +++ L Sbjct: 234 ---PVELEGLGLVEALRALLADFEERTGITVDLSLGSELERLPP--EAEDALFRIVQEAL 288 Query: 377 SNAVKFTAIGGRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 +NA++ A V VT+ T + + + DNG G + Sbjct: 289 TNAIRH-AQATEVRVTLERTDDELR-LEVIDNGVGFDPDKEGG----------------- 329 Query: 437 GVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILP 473 G GL + + GG I S +G V LP Sbjct: 330 --GFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLP 364 >gnl|CDD|34264 COG4645, COG4645, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 410 Score = 33.0 bits (75), Expect = 0.17 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 6/106 (5%) Query: 106 WRIWLLVGQIAIGLCWTLLTLVEPGTW--TPEYLTIYKSATLLIALSISALSNFMLPYAV 163 W + L +A+ + W + L W P +T T L + + V Sbjct: 243 WLVGLAAAYLALAIFWVFMPLWIITLWFGLPMVIT-GFDKTFLSLPRLLHVLAIAYLIVV 301 Query: 164 FLSFFPVVVALSTQ--AIMSMHVLDISLAG-MLATALSFFTYITYH 206 + AI+ H L + +AG +LA +T Sbjct: 302 VPRLSSLARVGPQHPLAILGRHSLPVFIAGTILAMVAQVLLLVTRG 347 >gnl|CDD|31579 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]. Length = 538 Score = 32.2 bits (73), Expect = 0.38 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%) Query: 366 KGMRQVILNLLSNAVKFTAIGG---RVHVTVGWTSGRGQY-ISIKDNGPGIAEGEIPTVL 421 + + + L++N++ G + V + G+ Y + ++DNGPGI E +IP V Sbjct: 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-GKDHYKVIVEDNGPGIPEEQIPKVF 93 Query: 422 TSFGQGSIA---IKS-AEQGVGL 440 GS I+S +QG+G+ Sbjct: 94 GKMLYGSKFHRNIQSRGQQGIGI 116 >gnl|CDD|32791 COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]. Length = 456 Score = 31.2 bits (70), Expect = 0.67 Identities = 44/304 (14%), Positives = 96/304 (31%), Gaps = 47/304 (15%) Query: 148 ALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGMLATALSFFTYITYHL 207 + + LS ++ L ++ + + + + + + + L Sbjct: 151 FIIFRKTEWLVYLVVPKLSILLSLIRLLFILVILVLLFLVVILLLSSFSSRSILLPILGL 210 Query: 208 FKSNVKILS-----CQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLAS--MSHEL 260 +I + + + E + L +E +E+ A+ R L S H L Sbjct: 211 ILLLSRIALGYLSELKEISETINEMEERLEYLIEENYSLEQEQLEAELRALQSQINPHFL 270 Query: 261 RTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYE 320 L I +E + E ++ + L R + Sbjct: 271 YNTLETIRMLAEEDDPEEAA----------------------KVVKALSKLLRYSLSNLD 308 Query: 321 LSESAISLIDIVRECIIMLQ-LRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNA 379 +++ + E +++ + L Q+ I ++ + + V+ L+ NA Sbjct: 309 ------NIVTLEIELLLIEKYLEIQKLRIGDRLEVPLPIDEELEPLIDPKLVLQPLVENA 362 Query: 380 VKFTAIGGRVHVTVGWTSGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQ 436 ++ R ++ ++ + ISI DNGPGI E +G Sbjct: 363 IEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDE--------EKLEGLSTKGENRS 414 Query: 437 GVGL 440 G+GL Sbjct: 415 GIGL 418 >gnl|CDD|33785 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]. Length = 290 Score = 30.8 bits (69), Expect = 0.90 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 218 QAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF------LASMSHELRTPLNAILGFS 271 Q EK++L+ ELE ++ +E ++R + + SR L ++L+ + + Sbjct: 148 QKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 Query: 272 EVIELETMGPLNNETYKEYIGDIHRSG---QHLLNLINEILDLSRIEAGRYELSESAISL 328 E+ E E + L ET DI G + +L I A E A+ Sbjct: 208 ELPEEELISDLVKETLNLAPKDIEGQGYIYAEDEKEVEILLGTVYIAA---PSREDAVEE 264 Query: 329 IDIVRECIIMLQLRAQEKN 347 ++I++E I + E+ Sbjct: 265 LEIIKEAIEEVIPEIDEEG 283 >gnl|CDD|34633 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]. Length = 861 Score = 29.9 bits (67), Expect = 1.8 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 417 IPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLREGVEVIAILPNTR 476 I T+L + KS + +G L A+S++ GG+ ++ ++ LPN Sbjct: 369 IETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIV---------FLSTLPNMG 419 Query: 477 VLNFIPEDNHESTQYKC 493 + ++ ES+ C Sbjct: 420 IGKLQLREDKESSLLSC 436 >gnl|CDD|111344 pfam02438, Adeno_100, Late 100kD protein. The late 100kD protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus. Length = 583 Score = 29.6 bits (67), Expect = 2.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Query: 204 TYHLFKSNVKI-LSCQAEKD--DLIAELEVAKSLSD 236 TYH+F N KI LSC+A + D L+ L D Sbjct: 74 TYHIFFQNQKIPLSCKANRSGADTYLALKEGTRLPD 109 >gnl|CDD|34611 COG5006, COG5006, Predicted permease, DMT superfamily [General function prediction only]. Length = 292 Score = 29.5 bits (66), Expect = 2.5 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%) Query: 51 ILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYVWRIWL 110 +L +++LL W + +P+ +L A +A + LG++ ++ V V + Sbjct: 129 VLGIWLLLPLGQSVW-SLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVA 187 Query: 111 LVGQIAIGLCWTLLTLVEPGTWTPEYLTI-----YKSATLLIALSISALSNFMLP---YA 162 + + IG P ++P L + S+ L +L + AL LP + Sbjct: 188 ALIVLPIGA-----AQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALR--RLPARTFG 240 Query: 163 VFLSFFPVVVALSTQAIMSMHVLDISLAGMLA 194 LS P + ALS + + I + A Sbjct: 241 TLLSLEPALAALSGLIFLGETLTLIQWLAIAA 272 >gnl|CDD|34202 COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms]. Length = 459 Score = 29.2 bits (65), Expect = 2.8 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%) Query: 403 ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGV-GLGLPIAQSIMANHGGQFLIRSK 461 + ++DNG G + +K A Q G+GL + MA+ GG+ + S Sbjct: 393 LMVRDNGVGFS-----------------VKEALQKRHGIGLRNMRERMAHFGGELEVESS 435 Query: 462 LREGVEVIAILPNT 475 +G E+ +LP Sbjct: 436 -PQGTELTVLLPLD 448 >gnl|CDD|36144 KOG0926, KOG0926, KOG0926, DEAH-box RNA helicase [RNA processing and modification, Translation, ribosomal structure and biogenesis]. Length = 1172 Score = 28.9 bits (64), Expect = 3.5 Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 4/205 (1%) Query: 134 PEYLTIYKSATLLIALSISALSNFMLPYAVFLSFFPVVVALSTQAIMSMHVLDISLAGML 193 P+ + K+ L AL + + +S FP+ S S + L Sbjct: 747 PDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIAL 806 Query: 194 ATALSFF-TYITYHLFKSNVKILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRF 252 +ALS + I N I + E+ DLI + E + + R+R E+ A+SRF Sbjct: 807 VSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRR-EKSKAARSRF 865 Query: 253 LASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLS 312 S L L + + +E E N + + ++ + + L NL+N Sbjct: 866 SNLDSDALV--LLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQD 923 Query: 313 RIEAGRYELSESAISLIDIVRECII 337 ++ L + ++R+ I Sbjct: 924 VEKSWDLTLKPPTDTQAKLLRQMIC 948 >gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain [Cytoskeleton]. Length = 1930 Score = 28.7 bits (64), Expect = 3.7 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%) Query: 213 KILSCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILG--- 269 +I +A +L ELE + +R +AE + S L + EL Sbjct: 1098 QIKELEARIKELEEELEAER----ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLE 1153 Query: 270 -----FSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILD 310 +EV +L ++ I ++ + L + E L+ Sbjct: 1154 LNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLE 1199 >gnl|CDD|37363 KOG2152, KOG2152, KOG2152, Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]. Length = 865 Score = 28.5 bits (63), Expect = 4.1 Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 324 SAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT 383 S+ V+ + +LR + E ++ LS++ + M L+ +S A K Sbjct: 304 SSADYYSRVQHIKVANELREIGEYQEFTDDLEYILSTLQSALLPMETRCLSAISLADKCV 363 Query: 384 AIGGRVHV 391 R+H+ Sbjct: 364 MPDFRMHL 371 >gnl|CDD|37743 KOG2532, KOG2532, KOG2532, Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]. Length = 466 Score = 28.7 bits (64), Expect = 4.1 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 144 TLLIALSISALSNFMLPYAVFLSFFPVVVA 173 I+ ISAL + P A + F+ ++V Sbjct: 105 VFFISGLISALLTLLTPLAASIGFYLLLVL 134 >gnl|CDD|35790 KOG0570, KOG0570, KOG0570, Transcriptional coactivator [Transcription]. Length = 223 Score = 28.0 bits (62), Expect = 6.6 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 259 ELRTPLN--AILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEA 316 ELR LN +L F E++++ P + +E + DI +L +LINE E+ Sbjct: 78 ELRK-LNRSLLLNFLELLDILIRAP---DMREEKVEDIRTIFVNLHHLINEYRPHQARES 133 Query: 317 GRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMR 369 + DIV + L+ + +E + FQ + L + + R Sbjct: 134 LIMLMERQIEQRSDIVEDFKKHLR-QVREVLDDQFQTLRGKLPAPPQSSQLTR 185 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,788,703 Number of extensions: 311139 Number of successful extensions: 912 Number of sequences better than 10.0: 1 Number of HSP's gapped: 876 Number of HSP's successfully gapped: 72 Length of query: 495 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 397 Effective length of database: 4,146,055 Effective search space: 1645983835 Effective search space used: 1645983835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.6 bits)