RPSBLAST alignment of GI: 254780701 and protein with PDBid: 1mu5

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 343 AQEKNIEI----FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVGW 395
           A+EK   +    F K +P L+      + + Q +  L+ N++  T + G    + +T+  
Sbjct: 4   AKEKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDL 63

Query: 396 TSGRGQY--ISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQG-VGLGLPIAQSIMANH 452
                Q   +++ DNG GI   E+P         S  +    +G  GLG+  A      H
Sbjct: 64  IDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMH 123

Query: 453 GGQFL-IRSKLREG 465
             + + I +     
Sbjct: 124 QDKPIEIETSPVNS 137