RPSBLAST alignment of GI: 254780701 and protein with PDBid: 2q2e

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 340 QLRAQEKNIEI--FQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGG---RVHVTVG 394
           +L  ++K+I +  F + +  +    +  + +   +   + NA+      G    + V V 
Sbjct: 8   ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVE 67

Query: 395 WTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGS----IAIKSAEQGVGLGLPIAQSIMA 450
            T      + I+DNGPGI   +IP V      GS    +     +QG+G+   +  + M 
Sbjct: 68  RTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMT 127

Query: 451 NHGGQFLIRSK 461
             G    I SK
Sbjct: 128 A-GRHTKILSK 137