Query gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 229
No_of_seqs 118 out of 1832
Neff 8.2
Searched_HMMs 23785
Date Tue May 31 17:03:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780703.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sum_B Phosphate transport sys 100.0 8.9E-43 0 323.2 25.8 217 6-223 2-218 (235)
2 1xwm_A PHOU, phosphate uptake 100.0 2.6E-42 0 319.9 25.1 216 5-221 1-216 (217)
3 1t72_A Phosphate transport sys 100.0 9.9E-42 0 315.7 27.6 218 8-226 8-225 (227)
4 2i0m_A Phosphate transport sys 100.0 2E-40 8.4E-45 306.4 26.2 214 5-219 1-214 (216)
5 2olt_A Hypothetical protein; N 99.2 2.7E-08 1.2E-12 76.9 22.8 198 5-212 7-223 (227)
6 1vct_A Hypothetical protein PH 99.2 2.4E-10 1E-14 91.5 9.9 103 5-111 3-105 (205)
7 1xwm_A PHOU, phosphate uptake 99.1 2.5E-09 1E-13 84.3 11.7 97 118-214 10-109 (217)
8 1t72_A Phosphate transport sys 99.0 3.8E-09 1.6E-13 83.0 11.7 94 120-213 16-112 (227)
9 1sum_B Phosphate transport sys 99.0 3.5E-09 1.5E-13 83.3 10.8 90 121-210 13-105 (235)
10 2i0m_A Phosphate transport sys 98.9 1.7E-08 7E-13 78.4 12.4 98 118-215 10-110 (216)
11 3l39_A Putative PHOU-like phos 98.9 2E-06 8.4E-11 63.6 22.9 183 18-212 30-222 (227)
12 1vct_A Hypothetical protein PH 98.7 2.1E-07 9E-12 70.5 10.7 95 117-212 11-105 (205)
13 2olt_A Hypothetical protein; N 96.3 0.055 2.3E-06 31.9 10.5 33 180-212 154-186 (227)
14 3l39_A Putative PHOU-like phos 92.7 0.5 2.1E-05 25.0 11.3 18 189-206 206-223 (227)
15 1b5l_A Interferon TAU; cytokin 35.7 16 0.00068 14.2 6.0 18 130-147 56-73 (172)
16 1rh2_A Interferon-alpha 2B; cy 29.3 20 0.00086 13.5 6.3 77 126-203 51-131 (165)
17 1pq1_B BCL2-like protein 11; B 25.9 23 0.00098 13.1 2.1 14 88-101 6-19 (33)
18 3ci9_A Heat shock factor-bindi 23.7 26 0.0011 12.8 3.7 41 125-165 5-45 (48)
19 1wu3_I Interferon beta, IFN-be 21.3 28 0.0012 12.5 5.2 93 111-204 33-130 (161)
20 2wh6_B BCL-2-like protein 11; 20.1 30 0.0013 12.3 1.7 12 89-100 7-18 (26)
No 1
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=100.00 E-value=8.9e-43 Score=323.20 Aligned_cols=217 Identities=29% Similarity=0.407 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89999999999999999999999999999999996499999999984799999999999999999971397624655542
Q gi|254780703|r 6 LSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIV 85 (229)
Q Consensus 6 ~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~ 85 (229)
.+.|+++|+++++++.+||.+|.+|+..++++|.++|+++|++|++.|+.||.++.+|+++|+.+++++||+|.|||.+.
T Consensus 2 ~~~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlr~i~ 81 (235)
T 1sum_B 2 NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVT 81 (235)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 67899999999999999999999999999999986999999999982899999999999999988742598467888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999999999999999999983102653101334467799999999876443221125899999999999999999
Q gi|254780703|r 86 GSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHT 165 (229)
Q Consensus 86 ~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~ 165 (229)
+++++++++|||||||.+||+.+..... ..+.+....+.+|++.+.+|++.+++||.+.|.+.|.++++.+++||++|+
T Consensus 82 ~~l~i~~dlERIGD~a~nIa~~~~~~~~-~~~~~~~~~i~~m~~~v~~m~~~a~~a~~~~D~~~a~~v~~~~~~id~~~~ 160 (235)
T 1sum_B 82 AGIRVAELIENIADKCHDIAKNVLELME-EPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYE 160 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999887300-346562899999999999999999999984569999999998578899999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
Q ss_conf 9999999853217898899999999998687999999999866665310212231135
Q gi|254780703|r 166 SLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERV 223 (229)
Q Consensus 166 ~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~ 223 (229)
++++.++.++.++|+++..++.+++++++||||||||+||||+|+|++||+++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERigDh~~NIaE~viy~~tG~~~~~~~~ 218 (235)
T 1sum_B 161 KVREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHD 218 (235)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEETT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 9999999998869674999999999999999999999999999999992800001770
No 2
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=100.00 E-value=2.6e-42 Score=319.87 Aligned_cols=216 Identities=29% Similarity=0.432 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 78999999999999999999999999999999999649999999998479999999999999999997139762465554
Q gi|254780703|r 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREI 84 (229)
Q Consensus 5 ~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i 84 (229)
|.+.|+++|+++++++.+|+..|.+|+..++++|.++|++.|++|+..|+.||.++.+|+++|+++++++||+|.|||.+
T Consensus 1 Mr~~~~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~i~~~d~~id~l~~~I~~~~~~~la~~~p~~~dlr~~ 80 (217)
T 1xwm_A 1 MRETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRI 80 (217)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 93889999999999999999999999999999998699999999997389999999999999999876319966789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25999999999999999999999998310265310133446779999999987644322112589999999999999999
Q gi|254780703|r 85 VGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMH 164 (229)
Q Consensus 85 ~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~ 164 (229)
.+++++++++|||||||.+||+.+..+.+.+. ...+.++.+|++.+.+|++.++++|.++|.+.|.++++.+++||++|
T Consensus 81 ~~~~~i~~~lERIgD~a~~Ia~~~~~~~~~~~-~~~~~~i~~m~~~~~~m~~~a~~a~~~~d~~~a~~v~~~~~~id~~~ 159 (217)
T 1xwm_A 81 VAAIKIASDIERIADFAVNIAKACIRIGGQPF-VMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQY 159 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-SSCCHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998445778-76520699998999999999999776125999999998889999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
Q ss_conf 999999998532178988999999999986879999999998666653102122311
Q gi|254780703|r 165 TSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKE 221 (229)
Q Consensus 165 ~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~ 221 (229)
+++++.++.++.++++++..++.+++++++||||||||+||||+|+|++||++++-+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERigDh~~nIae~vi~~~tG~~~~~~ 216 (217)
T 1xwm_A 160 GEMMASLLAVAKTDAATLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHYDFN 216 (217)
T ss_dssp HHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999987599859999999999999999999999999999999815018868
No 3
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=100.00 E-value=9.9e-42 Score=315.71 Aligned_cols=218 Identities=33% Similarity=0.493 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999649999999998479999999999999999997139762465554259
Q gi|254780703|r 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGS 87 (229)
Q Consensus 8 ~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~ 87 (229)
.|.++|+++++++.+|+.+|..|+..++++|.++|++.+++|++.|+.||.++.+|+++|+.+++++||+|.|||.+.++
T Consensus 8 k~~~~L~~l~~~i~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~Id~l~~~I~~~~~~~l~~~~p~a~dlr~i~~~ 87 (227)
T 1t72_A 8 KLFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGI 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 09999999999999999999999999999998789999999997067899999999999999977379955789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998310265310133446779999999987644322112589999999999999999999
Q gi|254780703|r 88 IKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSL 167 (229)
Q Consensus 88 ~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l 167 (229)
+++++++|||||||.+||+.+..... ..+.+...++.+|++.+.+|++.++++|.++|.+.|.++++.+++||++|+++
T Consensus 88 ~~i~~~lERIgD~a~~Ia~~~~~~~~-~~~~~~~~~l~~m~~~v~~m~~~ai~a~~~~d~~~a~~i~~~~~~id~~~~~~ 166 (227)
T 1t72_A 88 YKIVSDLERMGDEAENIAERAILLAE-EPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQL 166 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-SCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997433-58741576799999999999999999998668999999999758899999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCH
Q ss_conf 99999853217898899999999998687999999999866665310212231135603
Q gi|254780703|r 168 FRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226 (229)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~~~~ 226 (229)
++.++.++.++++++..++.+++++++||||||||+||||+|+|++||+.++|..++.+
T Consensus 167 ~~~~~~~l~~~~~~~~~~~~~~~i~~~lERigDh~~nIae~viy~~tG~~irh~~~~~~ 225 (227)
T 1t72_A 167 ERELMTYVLEDPRNIKRAMHLSFVARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEK 225 (227)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999859885999999999999999999999999999999990860468983345
No 4
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4}
Probab=100.00 E-value=2e-40 Score=306.36 Aligned_cols=214 Identities=26% Similarity=0.363 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 78999999999999999999999999999999999649999999998479999999999999999997139762465554
Q gi|254780703|r 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREI 84 (229)
Q Consensus 5 ~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i 84 (229)
|.+.|+++|.++++++.+|+..|.+|+..++.+|.++|++.+++|++.|+.||.++.+|+++|+.+++++||+|+|+|++
T Consensus 1 m~~~~~~~L~~l~~~i~~m~~~v~~~l~~~~~~l~~~d~~~a~~v~~~d~~id~l~~~i~~~~~~~l~~~~p~~~dlr~~ 80 (216)
T 2i0m_A 1 MRNQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFV 80 (216)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 91889999999999999999999999999999998689999999997289899999999999999971679816789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25999999999999999999999998310265310133446779999999987644322112589999999999999999
Q gi|254780703|r 85 VGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMH 164 (229)
Q Consensus 85 ~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~ 164 (229)
.+++++++++|||||||.+||+.+..+.+.. +......+.+|++.+..|+..++.+|.+.|.+.|.++++.++++|++|
T Consensus 81 ~~~~~i~~~lERIgD~~~~ia~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~~~~~~a~~~~d~~~a~~~~~~~~~id~~~ 159 (216)
T 2i0m_A 81 ISIMSSCSDLERMGDHMAGIAKAVLQLKENQ-LAPDEEQLHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYY 159 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC-CC--CHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9888788999999999999999999732357-898689999999999999999999886336999999999867889999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
Q ss_conf 9999999985321789889999999999868799999999986666531021223
Q gi|254780703|r 165 TSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPY 219 (229)
Q Consensus 165 ~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~ 219 (229)
+++++.++.+++++++++..++.+++++++|||||||++||||+|+|++||+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~lERi~Dh~~nIae~vi~~~~G~~~~ 214 (216)
T 2i0m_A 160 YALSKEIIGLMKDQETSIPNGTQYLYIIGHLERFADYIANICERLVYLETGELVD 214 (216)
T ss_dssp HHHHHHHHHTTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999872998699999999999999999999999999999998262267
No 5
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A*
Probab=99.21 E-value=2.7e-08 Score=76.87 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 78999999999999999999999999999999999649999----99999847999999999999999999713976246
Q gi|254780703|r 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVL----AHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASD 80 (229)
Q Consensus 5 ~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~----a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~D 80 (229)
+..-|-+.-=.+=++-...+..+...+..+++++.++|.+. ++++...|..-|.+..+|...+.+. ...|+.+.
T Consensus 7 i~~lf~~sPf~~L~eha~~v~~~~~~L~~~~~~~~~~d~~~~~~~~~~I~~lE~~aD~i~~~i~~~L~~~--~i~P~dRe 84 (227)
T 2olt_A 7 ILGVFAKSPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSG--LFMPVERT 84 (227)
T ss_dssp -------CTTHHHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--CSCSSCHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHH
T ss_conf 8877279956999999999999999999999998739999999999999999998889999999973311--41898999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH--
Q ss_conf 5554259999999999999999999999983102653101334467799999999876443221-----------125--
Q gi|254780703|r 81 LREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGS-----------RST-- 147 (229)
Q Consensus 81 LR~i~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~-----------~d~-- 147 (229)
-++.++..+.+|+|++.++|..+.. .+...|++....+.++.+.+.+.+..+..++.. .+.
T Consensus 85 -----Di~~L~~~lD~I~D~ie~~a~~l~~-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~ 158 (227)
T 2olt_A 85 -----DLLELLTQQDKIANKAKDISGRVIG-RQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDF 158 (227)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -----9999999998999999999999853-4789983789999999999999999999999999998987525132899
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --89999999999999999999999998532178988999999999986879999999998666653
Q gi|254780703|r 148 --EKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYM 212 (229)
Q Consensus 148 --~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~ 212 (229)
+...++...+.+.|.++.++.+.+... ++..++...+.+..+...+|+++|+|-++|..+-.+
T Consensus 159 ~~~~~~~I~~~E~e~D~l~~~~~~~Lf~~--e~~~~~~~~i~~~ei~~~le~iaD~~e~vad~l~~i 223 (227)
T 2olt_A 159 VAKMINELDIIEEDTDDLQIQLRRQLFAL--ESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELM 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999864--678889999999999999999999999999999999
No 6
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=99.15 E-value=2.4e-10 Score=91.51 Aligned_cols=103 Identities=21% Similarity=0.303 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 78999999999999999999999999999999999649999999998479999999999999999997139762465554
Q gi|254780703|r 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREI 84 (229)
Q Consensus 5 ~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i 84 (229)
..+.|+.++..++..+.+|++++..|++.++.++..+|.+.|++|+..|+.+|.+..++...|+... .+| .|++.+
T Consensus 3 ~~~~~~~~~~~v~~~l~~m~~l~~~~i~~a~~al~~~d~~~a~~V~~~d~~vd~l~~~i~~~~~~~~--~~~--~d~~~~ 78 (205)
T 1vct_A 3 EVEEFKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAA--RNV--KEAEQV 78 (205)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC--HHHHHH
T ss_conf 1778898899999999999999999999999999968999999999877888999999999999997--284--018999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 259999999999999999999999983
Q gi|254780703|r 85 VGSIKIAADLERIGDLAKNTAKRVLAL 111 (229)
Q Consensus 85 ~~~~~i~~dlERIgD~a~~Ia~~~~~~ 111 (229)
.++++++.++|||||++.+|++.+...
T Consensus 79 ~~~l~i~~~~ErI~d~a~~ia~~v~~~ 105 (205)
T 1vct_A 79 ITILQIANAIEDISNAAGDLAKMVLEG 105 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998888668998776777631
No 7
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=99.06 E-value=2.5e-09 Score=84.34 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHH
Q ss_conf 1013344677999999998764432211258999999999999999999999999853217-8--988999999999986
Q gi|254780703|r 118 RKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED-P--RNITLCTHLLFCSKN 194 (229)
Q Consensus 118 ~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~-~--~~~~~~~~~~~i~r~ 194 (229)
..+...+..|+..|.+|+..++++|.++|.+.|..+...|+.||.++..+...++..+... | .+....+.++.++++
T Consensus 10 ~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~i~~~d~~id~l~~~I~~~~~~~la~~~p~~~dlr~~~~~~~i~~~ 89 (217)
T 1xwm_A 10 ASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAAIKIASD 89 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998699999999997389999999999999999876319966789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHEE
Q ss_conf 87999999999866665310
Q gi|254780703|r 195 IERIGDHVTNIAETIHYMTT 214 (229)
Q Consensus 195 lERigDh~~nIae~iif~~t 214 (229)
||||||||.|||+.+..+..
T Consensus 90 lERIgD~a~~Ia~~~~~~~~ 109 (217)
T 1xwm_A 90 IERIADFAVNIAKACIRIGG 109 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999998445
No 8
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=99.03 E-value=3.8e-09 Score=82.98 Aligned_cols=94 Identities=17% Similarity=0.311 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--CCHHHHHHHHHHHHHHH
Q ss_conf 1334467799999999876443221125899999999999999999999999985321-78--98899999999998687
Q gi|254780703|r 120 LVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMME-DP--RNITLCTHLLFCSKNIE 196 (229)
Q Consensus 120 ~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~-~~--~~~~~~~~~~~i~r~lE 196 (229)
+...+..|+..|..|+..++++|.++|.+.|.++.+.|+.||.++..+...++..+.. .| .+....+.++.+++.||
T Consensus 16 l~~~i~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~Id~l~~~I~~~~~~~l~~~~p~a~dlr~i~~~~~i~~~lE 95 (227)
T 1t72_A 16 TKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLE 95 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999878999999999706789999999999999997737995578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHE
Q ss_conf 99999999986666531
Q gi|254780703|r 197 RIGDHVTNIAETIHYMT 213 (229)
Q Consensus 197 RigDh~~nIae~iif~~ 213 (229)
||||||.|||+.+....
T Consensus 96 RIgD~a~~Ia~~~~~~~ 112 (227)
T 1t72_A 96 RMGDEAENIAERAILLA 112 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999743
No 9
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=99.01 E-value=3.5e-09 Score=83.29 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 33446779999999987644322112589999999999999999999999998532-1789--88999999999986879
Q gi|254780703|r 121 VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMM-EDPR--NITLCTHLLFCSKNIER 197 (229)
Q Consensus 121 ~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~-~~~~--~~~~~~~~~~i~r~lER 197 (229)
...+..|+..|.+|+..++++|.++|.++|..+...|+.||.++..+....+..+. ..|. +....+.++-+++.|||
T Consensus 13 ~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlr~i~~~l~i~~dlER 92 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIEN 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998699999999998289999999999999998874259846788899999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999986666
Q gi|254780703|r 198 IGDHVTNIAETIH 210 (229)
Q Consensus 198 igDh~~nIae~ii 210 (229)
|||||.|||+.+.
T Consensus 93 IGD~a~nIa~~~~ 105 (235)
T 1sum_B 93 IADKCHDIAKNVL 105 (235)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999988
No 10
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4}
Probab=98.95 E-value=1.7e-08 Score=78.42 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC--CHHHHHHHHHHHHH
Q ss_conf 1013344677999999998764432211258999999999999999999999999853217-89--88999999999986
Q gi|254780703|r 118 RKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED-PR--NITLCTHLLFCSKN 194 (229)
Q Consensus 118 ~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~-~~--~~~~~~~~~~i~r~ 194 (229)
..+...+..|+..|..|+..++.+|.++|.+.|..+.+.|+.||.++..+...++..+... |. .......++-+++.
T Consensus 10 ~~l~~~i~~m~~~v~~~l~~~~~~l~~~d~~~a~~v~~~d~~id~l~~~i~~~~~~~l~~~~p~~~dlr~~~~~~~i~~~ 89 (216)
T 2i0m_A 10 HELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSD 89 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998689999999997289899999999999999971679816789999988878899
Q ss_pred HHHHHHHHHHHHHHHHHHEEC
Q ss_conf 879999999998666653102
Q gi|254780703|r 195 IERIGDHVTNIAETIHYMTTG 215 (229)
Q Consensus 195 lERigDh~~nIae~iif~~tG 215 (229)
+|||||||.|||+.+.++...
T Consensus 90 lERIgD~~~~ia~~~~~~~~~ 110 (216)
T 2i0m_A 90 LERMGDHMAGIAKAVLQLKEN 110 (216)
T ss_dssp HHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999973235
No 11
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=2e-06 Score=63.57 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999964999----9999998479999999999999999997139762465554259999999
Q gi|254780703|r 18 RRIVEMGIVSRKMVDSSVRAFIEGDTV----LAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAAD 93 (229)
Q Consensus 18 ~~i~~m~~~v~~~l~~~~~al~~~D~~----~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~d 93 (229)
.-+.+.+..+........+++...|.. .++++...|..-|.+..+|.....+. ...|..++ -++.++..
T Consensus 30 ~ll~e~a~~~~~aa~~L~e~l~~~~~~~~~~~~~~i~~lE~eaD~i~~~i~~~L~~s--fitP~dRe-----Di~~L~~~ 102 (227)
T 3l39_A 30 PLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTT--FITPFDRE-----DIHDLASC 102 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCSSCHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHH-----HHHHHHHH
T ss_conf 999999999999999999998747854599999999999999899999999988872--75988999-----99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999831026531013344677999999998764432211--25----89999999999999999999
Q gi|254780703|r 94 LERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSR--ST----EKTQSICNRDGELDAMHTSL 167 (229)
Q Consensus 94 lERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~--d~----~~a~~i~~~e~~id~l~~~l 167 (229)
+..|.|++..+|..+.. .+...+.+...++.++...+...+..+++.+.+. +. +...++...+.+.|.+|..+
T Consensus 103 lD~I~D~ie~~a~~l~l-~~~~~~~~~~~el~~~i~~~~~~~~~~v~~l~~l~~~~~~~~e~~~eI~~lE~e~D~l~~~~ 181 (227)
T 3l39_A 103 MDDVIDGINSSAKRIVI-YNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELF 181 (227)
T ss_dssp HHHHHHHHHHHHHHHHH-HCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88987999999998863-58999868999999999999999999999999860252679999999999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998532178988999999999986879999999998666653
Q gi|254780703|r 168 FRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYM 212 (229)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~ 212 (229)
.+.+.. +..++...+.+..+.+.+|+++|+|-++|..+-.+
T Consensus 182 ~~~Lf~----~e~d~~~~i~~~ei~~~Le~~~D~~e~va~~i~~I 222 (227)
T 3l39_A 182 ITKLFE----EEKDCIELIKIKEIMHELEKTTDAAEHVGKILKNL 222 (227)
T ss_dssp HHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999872----79989999999999999999999999999999988
No 12
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=98.68 E-value=2.1e-07 Score=70.50 Aligned_cols=95 Identities=9% Similarity=0.083 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31013344677999999998764432211258999999999999999999999999853217898899999999998687
Q gi|254780703|r 117 PRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE 196 (229)
Q Consensus 117 ~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lE 196 (229)
+......+.+|...+..|+..+..||.++|.+.|.+++..|+.+|.++..+....+.... .+.+....+.++.++..+|
T Consensus 11 ~~~v~~~l~~m~~l~~~~i~~a~~al~~~d~~~a~~V~~~d~~vd~l~~~i~~~~~~~~~-~~~d~~~~~~~l~i~~~~E 89 (205)
T 1vct_A 11 PKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAAR-NVKEAEQVITILQIANAIE 89 (205)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999689999999998778889999999999999972-8401899999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999998666653
Q gi|254780703|r 197 RIGDHVTNIAETIHYM 212 (229)
Q Consensus 197 RigDh~~nIae~iif~ 212 (229)
|||||+.||++.+...
T Consensus 90 rI~d~a~~ia~~v~~~ 105 (205)
T 1vct_A 90 DISNAAGDLAKMVLEG 105 (205)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8668998776777631
No 13
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A*
Probab=96.35 E-value=0.055 Score=31.88 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988999999999986879999999998666653
Q gi|254780703|r 180 RNITLCTHLLFCSKNIERIGDHVTNIAETIHYM 212 (229)
Q Consensus 180 ~~~~~~~~~~~i~r~lERigDh~~nIae~iif~ 212 (229)
.+......+..-.+.+|+=+|....-+-.-+|-
T Consensus 154 ~~~~~~~~~~~~I~~~E~e~D~l~~~~~~~Lf~ 186 (227)
T 2olt_A 154 REVDFVAKMINELDIIEEDTDDLQIQLRRQLFA 186 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 328999999999999999999999999999986
No 14
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=92.69 E-value=0.5 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999986879999999998
Q gi|254780703|r 189 LFCSKNIERIGDHVTNIA 206 (229)
Q Consensus 189 ~~i~r~lERigDh~~nIa 206 (229)
-.++...|++||-...|+
T Consensus 206 e~~~D~~e~va~~i~~Iv 223 (227)
T 3l39_A 206 EKTTDAAEHVGKILKNLI 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999884
No 15
>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} SCOP: a.26.1.3
Probab=35.66 E-value=16 Score=14.21 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999876443221125
Q gi|254780703|r 130 LSLEQLSEILDVYGSRST 147 (229)
Q Consensus 130 ~v~~m~~~a~~af~~~d~ 147 (229)
.+.+|+..+..-|.+...
T Consensus 56 v~~emlqqif~LF~~~~s 73 (172)
T 1b5l_A 56 VLYEMLQQSFNLFYTEHS 73 (172)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999999857987
No 16
>1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix bundle; 2.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1itf_A 2hym_B 2ksx_A 2kz1_A
Probab=29.31 E-value=20 Score=13.50 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7799999999876443221125899999999999999999999999985321----789889999999999868799999
Q gi|254780703|r 126 PLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMME----DPRNITLCTHLLFCSKNIERIGDH 201 (229)
Q Consensus 126 ~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~----~~~~~~~~~~~~~i~r~lERigDh 201 (229)
.....+.+|+..++.-|.+.....+-.-...|.-.+.++.++. .+-..+.+ .......-...+-+-+||-||..|
T Consensus 51 ~~~~~~~emlqqif~LF~~~~ssa~W~et~le~~l~~L~~Ql~-~Le~Cl~~~~~~~~~~~~~~~~~l~lkkYF~rI~~y 129 (165)
T 1rh2_A 51 ETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLN-DLEACVIQGVGVTETPLMNEDSILAVRKYFQRITLY 129 (165)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999836887021779999999999999999-999999886455458777786137999999899999
Q ss_pred HH
Q ss_conf 99
Q gi|254780703|r 202 VT 203 (229)
Q Consensus 202 ~~ 203 (229)
..
T Consensus 130 Lk 131 (165)
T 1rh2_A 130 LK 131 (165)
T ss_pred HH
T ss_conf 86
No 17
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=25.86 E-value=23 Score=13.08 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780703|r 88 IKIAADLERIGDLA 101 (229)
Q Consensus 88 ~~i~~dlERIgD~a 101 (229)
+.|+.+|.||||--
T Consensus 6 iwiaqelrrigdef 19 (33)
T 1pq1_B 6 IRIAQELRRIGDEF 19 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999986876
No 18
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.66 E-value=26 Score=12.80 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67799999999876443221125899999999999999999
Q gi|254780703|r 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHT 165 (229)
Q Consensus 125 ~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~ 165 (229)
.++...|..++...-+-|.+-+.....++-++...||++.+
T Consensus 5 ~eLt~~Vq~LL~QmQ~kFq~mSd~Ii~riDdM~~rIDdLEk 45 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998899999999998836888976
No 19
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=21.34 E-value=28 Score=12.49 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHH--HH
Q ss_conf 310265310133446--7799999999876443221125899999999999999999999999985321789-889--99
Q gi|254780703|r 111 LQMFGVPRKLVWTIE--PLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR-NIT--LC 185 (229)
Q Consensus 111 ~~~~~~~~~~~~~l~--~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~-~~~--~~ 185 (229)
..++++|.+....+. .....+.+|+..+..-|.+.+...+=.-...|.-...++.++. .+-..+.+... ... ..
T Consensus 33 r~dF~fP~e~~~q~Qk~~a~~v~~emlqqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql~-~Le~Cl~~~~~e~~~~~~~ 111 (161)
T 1wu3_I 33 RADFKIPMEMTEKMQKSYTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQTV-FLKTVLEEKQEERLTWEMS 111 (161)
T ss_dssp SCCCCCCGGGGSCCCHHHHHHHHHHHHHHHHHHTTSCCGGGTCCHHHHHHHHHHHHHHHH-HHHHHGGGGHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCC
T ss_conf 788999478775410999999999999999999866787111778999999999999999-9999998763356666778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999868799999999
Q gi|254780703|r 186 THLLFCSKNIERIGDHVTN 204 (229)
Q Consensus 186 ~~~~~i~r~lERigDh~~n 204 (229)
...+-+-+||-||..+..+
T Consensus 112 ~~~L~lkkYF~rI~~yLk~ 130 (161)
T 1wu3_I 112 STALHLKSYYWRVQRYLKL 130 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 6404999999999999985
No 20
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein, apoptosis; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.07 E-value=30 Score=12.31 Aligned_cols=12 Identities=58% Similarity=0.750 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780703|r 89 KIAADLERIGDL 100 (229)
Q Consensus 89 ~i~~dlERIgD~ 100 (229)
-|+.++.||||-
T Consensus 7 wiaqelrrigde 18 (26)
T 2wh6_B 7 WIAQELRRIGDE 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999998787
Done!