Query gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 229 No_of_seqs 118 out of 1832 Neff 8.2 Searched_HMMs 13730 Date Wed Jun 1 08:04:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780703.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1sumb_ a.7.12.1 (B:) PhoU hom 100.0 3.2E-43 0 324.7 27.1 214 7-221 2-215 (225) 2 d1xwma_ a.7.12.1 (A:) Phosphat 100.0 2.6E-42 0 318.2 25.1 211 8-219 1-211 (212) 3 d1t72a_ a.7.12.1 (A:) Phosphat 100.0 3.3E-41 2.8E-45 310.3 27.7 209 7-216 7-215 (215) 4 d1vcta1 a.7.12.1 (A:9-107) Hyp 99.6 2.2E-14 1.6E-18 118.7 10.9 90 16-109 6-95 (99) 5 d1vcta1 a.7.12.1 (A:9-107) Hyp 99.5 2.9E-13 2.1E-17 110.7 13.5 96 117-213 3-98 (99) 6 d1sumb_ a.7.12.1 (B:) PhoU hom 99.1 1.1E-09 8.3E-14 85.0 12.6 89 20-111 118-206 (225) 7 d1xwma_ a.7.12.1 (A:) Phosphat 99.1 1.4E-09 1E-13 84.4 11.8 96 119-214 8-106 (212) 8 d1t72a_ a.7.12.1 (A:) Phosphat 99.0 1.6E-09 1.2E-13 83.9 11.7 98 118-215 14-114 (215) 9 d1b5la_ a.26.1.3 (A:) Interfer 26.1 13 0.00097 13.1 6.2 76 128-204 54-133 (164) 10 d1wu3i_ a.26.1.3 (I:) Interfer 20.2 17 0.0013 12.3 7.1 56 112-167 34-91 (161) No 1 >d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=3.2e-43 Score=324.67 Aligned_cols=214 Identities=29% Similarity=0.421 Sum_probs=204.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999999999999999999999999964999999999847999999999999999999713976246555425 Q gi|254780703|r 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVG 86 (229) Q Consensus 7 ~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~ 86 (229) +-|+++|+++++++.+||..|.+|+..++.+|.++|+++|++|++.|+.||.++.+|+++|+.++|++||+|+|||.+.+ T Consensus 2 r~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlR~i~~ 81 (225) T d1sumb_ 2 RLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTA 81 (225) T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 62799999999999999999999999999999869999999999717779999999999999877116973257898778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999831026531013344677999999998764432211258999999999999999999 Q gi|254780703|r 87 SIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTS 166 (229) Q Consensus 87 ~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~ 166 (229) ++++++++|||||||.+||+.+..... ..+.+....+.+|++.+.+|+..+++||.++|.++|.++++.+++||++|++ T Consensus 82 ~l~i~~dlERIgD~a~~Ia~~~~~~~~-~~~~~~~~~i~~m~~~~~~m~~~a~~a~~~~d~~~a~~v~~~d~~id~l~~~ 160 (225) T d1sumb_ 82 GIRVAELIENIADKCHDIAKNVLELME-EPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEK 160 (225) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999988999988620-3565506799999999999999999999875699999999978889999999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC Q ss_conf 9999998532178988999999999986879999999998666653102122311 Q gi|254780703|r 167 LFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKE 221 (229) Q Consensus 167 l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~ 221 (229) +++.++.++.++++++..++.+++++++||||||||+||||+|+|++||+.+++. T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERIgDh~~nIaE~v~y~~~G~~~~~~ 215 (225) T d1sumb_ 161 VREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCY 215 (225) T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 9999999988598739999999999999999999999999999999818310115 No 2 >d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Probab=100.00 E-value=2.6e-42 Score=318.17 Aligned_cols=211 Identities=30% Similarity=0.445 Sum_probs=202.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999649999999998479999999999999999997139762465554259 Q gi|254780703|r 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGS 87 (229) Q Consensus 8 ~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~ 87 (229) +|+++|+++++++.+|+..|.+|+..++++|.++|++.|++|++.|+.||+++++|+++|+++++++||+|+|||.+.++ T Consensus 1 ~f~~~L~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~v~~~d~~id~l~~~I~~~~~~~ia~~~p~a~dlr~~~~~ 80 (212) T d1xwma_ 1 TFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAA 80 (212) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 97999999999999999999999999999998699999999997268899999999999999885511105788988889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999998310265310133446779999999987644322112589999999999999999999 Q gi|254780703|r 88 IKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSL 167 (229) Q Consensus 88 ~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l 167 (229) +++++++|||||||.+||+.+..+.+.+.+ +.+.++.+|++.+.+|++.++++|.++|.+.|.++++.+++||++++++ T Consensus 81 ~~i~~~lERIgD~a~~Ia~~~~~~~~~~~~-~~~~~l~~m~~~~~~~~~~ai~a~~~~d~~~a~~i~~~~~~id~~~~~~ 159 (212) T d1xwma_ 81 IKIASDIERIADFAVNIAKACIRIGGQPFV-MDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEM 159 (212) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999998779999980356777-5520788998999999999999888765799999998899999999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC Q ss_conf 9999985321789889999999999868799999999986666531021223 Q gi|254780703|r 168 FRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPY 219 (229) Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~ 219 (229) ++.++.++.++++++..++.+++++++||||||||+||||+|+|++||++++ T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~i~r~LERIgDh~~nIae~vif~~tG~~~~ 211 (212) T d1xwma_ 160 MASLLAVAKTDAATLAQMNVLALVARYIERTADHATNIAEHLVYLVKGKHYD 211 (212) T ss_dssp HHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999873987399999999999999999999999999999998430088 No 3 >d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=3.3e-41 Score=310.29 Aligned_cols=209 Identities=34% Similarity=0.504 Sum_probs=200.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999999999999999999999999964999999999847999999999999999999713976246555425 Q gi|254780703|r 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVG 86 (229) Q Consensus 7 ~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~ 86 (229) -+|+++|+++++++.+|+..|..++..++++|.++|.+.+++|++.|+.||.++.+|+++|+.++++++|+|+|||++.+ T Consensus 7 ~~~~~~L~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~l~~~I~~~~~~~l~~~~p~a~dlr~~~~ 86 (215) T d1t72a_ 7 MKLFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMG 86 (215) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 30999999999999999999999999999999879999999999748888889999999999888615745678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999831026531013344677999999998764432211258999999999999999999 Q gi|254780703|r 87 SIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTS 166 (229) Q Consensus 87 ~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~ 166 (229) ++++++++|||||||.+||+.+..... ..+.+...++.+|++.+.+|+..++++|.++|.+.|.++++.+++||++|++ T Consensus 87 ~~~i~~~lERIgD~a~~ia~~~~~~~~-~~~~~~~~~l~~m~~~v~~m~~~a~~a~~~~d~~~a~~v~~~d~~id~~~~~ 165 (215) T d1t72a_ 87 IYKIVSDLERMGDEAENIAERAILLAE-EPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQ 165 (215) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 998989999999999999999997313-5885246789999999999999999998736899999999985668999999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC Q ss_conf 99999985321789889999999999868799999999986666531021 Q gi|254780703|r 167 LFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGV 216 (229) Q Consensus 167 l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~ 216 (229) +++.++.++.++++++..++.+++++|+||||||||+||||+|+|++||+ T Consensus 166 ~~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~viy~~tG~ 215 (215) T d1t72a_ 166 LERELMTYVLEDPRNIKRAMHLSFVARHYERIADHAENVAEAAIYLSEGE 215 (215) T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999884988499999999999999999999999999999998489 No 4 >d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=99.55 E-value=2.2e-14 Score=118.74 Aligned_cols=90 Identities=24% Similarity=0.366 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999964999999999847999999999999999999713976246555425999999999 Q gi|254780703|r 16 LSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLE 95 (229) Q Consensus 16 l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlE 95 (229) ++..+.+|+..|.+|+..++.||.++|.+.|++|...|+.||.++.++...+.. +.++| .|++.+.+++.+++++| T Consensus 6 i~~~l~~M~~~~~~ml~~a~~a~~~~D~~~A~~v~~~d~~ID~l~~~i~~~l~~--~~~~~--~~~~~~~~~~~i~~~lE 81 (99) T d1vcta1 6 VKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL--AARNV--KEAEQVITILQIANAIE 81 (99) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSH--HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCC--CCHHHHHHHHHHHHHHH T ss_conf 999999999999999999999998789999999997047899999999999999--74693--00999999999999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780703|r 96 RIGDLAKNTAKRVL 109 (229) Q Consensus 96 RIgD~a~~Ia~~~~ 109 (229) ||||||.|||+.+. T Consensus 82 RIgDha~nIae~vi 95 (99) T d1vcta1 82 DISNAAGDLAKMVL 95 (99) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999998 No 5 >d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=99.50 E-value=2.9e-13 Score=110.65 Aligned_cols=96 Identities=9% Similarity=0.083 Sum_probs=88.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 31013344677999999998764432211258999999999999999999999999853217898899999999998687 Q gi|254780703|r 117 PRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE 196 (229) Q Consensus 117 ~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lE 196 (229) |..+.+.+.+|+..+..|+..++.||.++|.+.|..++..|+.||+++..+.+.++..+. +|.++..++.++.++++|| T Consensus 3 p~~i~~~l~~M~~~~~~ml~~a~~a~~~~D~~~A~~v~~~d~~ID~l~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~lE 81 (99) T d1vcta1 3 PKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAAR-NVKEAEQVITILQIANAIE 81 (99) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH T ss_conf 840999999999999999999999998789999999997047899999999999999746-9300999999999999999 Q ss_pred HHHHHHHHHHHHHHHHE Q ss_conf 99999999986666531 Q gi|254780703|r 197 RIGDHVTNIAETIHYMT 213 (229) Q Consensus 197 RigDh~~nIae~iif~~ 213 (229) ||||||+|||++|++.+ T Consensus 82 RIgDha~nIae~vi~~i 98 (99) T d1vcta1 82 DISNAAGDLAKMVLEGV 98 (99) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999998665 No 6 >d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} Probab=99.10 E-value=1.1e-09 Score=85.03 Aligned_cols=89 Identities=19% Similarity=0.303 Sum_probs=39.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999649999999998479999999999999999997139762465554259999999999999 Q gi|254780703|r 20 IVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGD 99 (229) Q Consensus 20 i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~~~~i~~dlERIgD 99 (229) +..|+..|.+|+..+++++.+.|.+.|.++...|+.||.++..+.+..+..+.. .|- .....+.++-++++|||||| T Consensus 118 i~~m~~~~~~m~~~a~~a~~~~d~~~a~~v~~~d~~id~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~i~~~lERIgD 194 (225) T d1sumb_ 118 IPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMME-SPK--YVKRALLLLEIAGNIEIIAD 194 (225) T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-CGG--GHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--CHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999987569999999997888999999999999999885-987--39999999999999999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999983 Q gi|254780703|r 100 LAKNTAKRVLAL 111 (229) Q Consensus 100 ~a~~Ia~~~~~~ 111 (229) ||.|||+.+..+ T Consensus 195 h~~nIaE~v~y~ 206 (225) T d1sumb_ 195 YATNIVEVSVYM 206 (225) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 7 >d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.06 E-value=1.4e-09 Score=84.45 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=78.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHH Q ss_conf 013344677999999998764432211258999999999999999999999999853217-8--9889999999999868 Q gi|254780703|r 119 KLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED-P--RNITLCTHLLFCSKNI 195 (229) Q Consensus 119 ~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~-~--~~~~~~~~~~~i~r~l 195 (229) .+...+..|+..|..|+..++++|.++|.+.|..+.+.|+.||.++..+...++..+... | .+....+.++.+++.| T Consensus 8 ~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~v~~~d~~id~l~~~I~~~~~~~ia~~~p~a~dlr~~~~~~~i~~~l 87 (212) T d1xwma_ 8 SLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAAIKIASDI 87 (212) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999986999999999972688999999999999998855111057889888899999999 Q ss_pred HHHHHHHHHHHHHHHHHEE Q ss_conf 7999999999866665310 Q gi|254780703|r 196 ERIGDHVTNIAETIHYMTT 214 (229) Q Consensus 196 ERigDh~~nIae~iif~~t 214 (229) |||||||.|||+.+..+.. T Consensus 88 ERIgD~a~~Ia~~~~~~~~ 106 (212) T d1xwma_ 88 ERIADFAVNIAKACIRIGG 106 (212) T ss_dssp HHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999877999998035 No 8 >d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Probab=99.05 E-value=1.6e-09 Score=83.90 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=82.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHH Q ss_conf 1013344677999999998764432211258999999999999999999999999853217-8--988999999999986 Q gi|254780703|r 118 RKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED-P--RNITLCTHLLFCSKN 194 (229) Q Consensus 118 ~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~-~--~~~~~~~~~~~i~r~ 194 (229) ..+...+..|+..|..|+..++++|.++|.+.|.++.+.|+.||.++..+.+..+..+... | .+....+.++.+++. T Consensus 14 ~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~l~~~I~~~~~~~l~~~~p~a~dlr~~~~~~~i~~~ 93 (215) T d1t72a_ 14 EETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSD 93 (215) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999998799999999997488888899999999998886157456789999999989899 Q ss_pred HHHHHHHHHHHHHHHHHHEEC Q ss_conf 879999999998666653102 Q gi|254780703|r 195 IERIGDHVTNIAETIHYMTTG 215 (229) Q Consensus 195 lERigDh~~nIae~iif~~tG 215 (229) ||||||||.|||+.+.....+ T Consensus 94 lERIgD~a~~ia~~~~~~~~~ 114 (215) T d1t72a_ 94 LERMGDEAENIAERAILLAEE 114 (215) T ss_dssp HHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999999999973135 No 9 >d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]} Probab=26.12 E-value=13 Score=13.11 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998764432211258999999999999999999999999853217--89889--99999999986879999999 Q gi|254780703|r 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMED--PRNIT--LCTHLLFCSKNIERIGDHVT 203 (229) Q Consensus 128 ~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l~~~~~~~l~~~--~~~~~--~~~~~~~i~r~lERigDh~~ 203 (229) ...+.+|+...+.-|.+.....+-.-...+.-...++..+ ..+-..+.+. ..+.. ..-..+-+-+||-||..|.. T Consensus 54 ~~~~~emlqqif~LF~~~~s~a~W~~t~le~fl~~L~~Ql-~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk 132 (164) T d1b5la_ 54 FPVLYEMLQQSFNLFYTEHSSAAWDTTLLEQLCTGLQQQL-DHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIYDYLQ 132 (164) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHH-HHHHHHCC------------CHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999999999999983799710057999999999999999-999999898735645676776415799999999999998 Q ss_pred H Q ss_conf 9 Q gi|254780703|r 204 N 204 (229) Q Consensus 204 n 204 (229) + T Consensus 133 ~ 133 (164) T d1b5la_ 133 E 133 (164) T ss_dssp H T ss_pred H T ss_conf 5 No 10 >d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.22 E-value=17 Score=12.33 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=23.8 Q ss_pred HCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 102653101334467--79999999987644322112589999999999999999999 Q gi|254780703|r 112 QMFGVPRKLVWTIEP--LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSL 167 (229) Q Consensus 112 ~~~~~~~~~~~~l~~--m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~l 167 (229) .++.+|.+....+.+ ....+.+|+..++.-|.+.....+-.-...|.-...++..+ T Consensus 34 ~dF~fP~e~~~q~Qk~~a~~v~~emlQqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql 91 (161) T d1wu3i_ 34 ADFKIPMEMTEKMQKSYTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQT 91 (161) T ss_dssp CCCCCCGGGGSCCCHHHHHHHHHHHHHHHHHHTTSCCGGGTCCHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 8999938887502399999999999999999986678713377899999999999999 Done!