RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>1t72_A Phosphate transport system protein PHOU homolog; helix
bundle, structural genomics, BSGC structure funded by
NIH, protein structure initiative; 2.90A {Aquifex
aeolicus} (A:)
Length = 227
Score = 144 bits (365), Expect = 7e-36
Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 1/224 (0%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
+EL+ ++++ + ++ +D + A + + LA +VI D +D LE DI
Sbjct: 4 GGGXKLFKELEETKEQVIKXAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDI 63
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWT 123
+ I IA QP A DLR I G KI +DLER GD A+N A+R + L + V
Sbjct: 64 ERRCIRXIALYQPEAGDLRXIXGIYKIVSDLERXGDEAENIAERAILLAEEPPLKPYVN- 122
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183
I +E+ E +++ + + + T + + +D +D ++ L REL TY++EDPRNI
Sbjct: 123 INFXSEIVKEXVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELXTYVLEDPRNIK 182
Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227
HL F +++ ERI DH N+AE Y++ G + ++++
Sbjct: 183 RAXHLSFVARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEKG 226
Score = 37.9 bits (87), Expect = 0.001
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDP---RNITL 184
A+L E + + + ++ E + + D +D + + R + + ++
Sbjct: 24 AKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRXIALYQPEAGDLRX 83
Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDC 228
+ ++ER GD NIAE +
Sbjct: 84 IXGIYKIVSDLERXGDEAENIAERAILLAEEPPLKPYVNINFXS 127
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
regulator, structural genomics, protein structure
initiative, PSI; 2.50A {Geobacillus stearothermophilus}
(A:)
Length = 217
Score = 139 bits (350), Expect = 4e-34
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 1/211 (0%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64
+ + ++L L +++EMG ++ + ++ AF + LA VID D +D LE ++
Sbjct: 1 MRETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVN 60
Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124
D A+ IA +QP+A+DLR IV +IKIA+D+ERI D A N AK + +
Sbjct: 61 DFALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKAC-IRIGGQPFVMDIGPL 119
Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184
+ L+ + +S + Y I + D +D + + LL D +
Sbjct: 120 VLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQ 179
Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215
L ++ IER DH TNIAE + Y+ G
Sbjct: 180 MNVLALVARYIERTADHATNIAEHLVYLVKG 210
>2i0m_A Phosphate transport system protein PHOU; zinc-binding
protein, structural genomics, PSI-2, protein structure
initiative; 2.40A {Streptococcus pneumoniae TIGR4} (A:)
Length = 216
Score = 137 bits (346), Expect = 1e-33
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 1/214 (0%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64
+ + +D EL L + + +G + + ++ A D +A +I+ D ++Q + I
Sbjct: 1 MRNQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIE 60
Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124
+A +QP SDLR ++ + +DLER+GD AK V +
Sbjct: 61 LTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAV-LQLKENQLAPDEEQL 119
Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184
+ +LSL L+++L + K SI +D ++D + +L +E++ M + +I
Sbjct: 120 HQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPN 179
Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQP 218
T L+ ++ER D++ NI E + Y+ TG
Sbjct: 180 GTQYLYIIGHLERFADYIANICERLVYLETGELV 213
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC
transport, PST, structural genomics, berkeley structural
genomics center, BSGC; 2.00A {Thermotoga maritima} (B:)
Length = 235
Score = 135 bits (340), Expect = 5e-33
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 1/225 (0%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64
+ +E+++ + +++ G KM +S+ + +E + LA +VI ++ V+DQ+E +I
Sbjct: 1 MNRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQ 60
Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124
+KA+ + P+ L + I++A +E I D + AK VL L + L
Sbjct: 61 EKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPLKPLEDIP 120
Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184
+A + E L L ++ + EK+ +C D ++D ++ + ELL YMME P+ +
Sbjct: 121 A-MANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKR 179
Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229
LL + NIE I D+ TNI E YM G +
Sbjct: 180 ALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHDELLLFK 224
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638,
structural genomics, joint center for structural
genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
(A:)
Length = 227
Score = 127 bits (320), Expect = 1e-30
Identities = 17/217 (7%), Positives = 66/217 (30%), Gaps = 6/217 (2%)
Query: 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE 60
M S + + + ++ V V + +E
Sbjct: 13 MKNSFFSKFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQI---KDME 69
Query: 61 RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120
R+ + + + +A+ ++ + D ++AKR++ +
Sbjct: 70 REGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESG 129
Query: 121 VWTIEPLAELSLEQLSEILDVYGS--RSTEKTQSICNRDGELDAMHTSLFRELLTYMMED 178
+ + + +D + ++ + + C + +++ ++ +T + E+
Sbjct: 130 KELSRLI-HEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEE 188
Query: 179 PRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215
++ + +E+ D ++ + + +
Sbjct: 189 EKDCIELIKIKEIMHELEKTTDAAEHVGKILKNLIVK 225
Score = 43.2 bits (101), Expect = 3e-05
Identities = 5/106 (4%), Positives = 29/106 (27%)
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183
++ L+++ +++ + + +++ L + +
Sbjct: 32 LKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPF 91
Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229
+ + ++ + D + + A+ I +
Sbjct: 92 DREDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIH 137
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB:
2iiu_A* (A:)
Length = 227
Score = 122 bits (306), Expect = 5e-29
Identities = 20/213 (9%), Positives = 57/213 (26%), Gaps = 5/213 (2%)
Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
+ + L ++ + + ++++ + + ++ + D L+R+I
Sbjct: 10 VFAKSPIKPLQEHXDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREI 69
Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVW- 122
+ L + KIA + I + L
Sbjct: 70 RLTLPSGLFXPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRC 129
Query: 123 --TIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLT--YMMED 178
+ ++ E + + R + N ++ L +L + +E
Sbjct: 130 IDAVGLAQQVINELDDLLEAGFRGREVDFVAKXINELDIIEEDTDDLQIQLRRQLFALES 189
Query: 179 PRNITLCTHLLFCSKNIERIGDHVTNIAETIHY 211
N L + + + D + +
Sbjct: 190 ELNPVDVXFLYKTIEWVGGLADLAERVGSRLEL 222
>1vct_A Hypothetical protein PH0236; helix rich, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii}
(A:1-107)
Length = 107
Score = 83.7 bits (207), Expect = 2e-17
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64
+ + E + +EM MVD + + + GD +A +V++ + +D L +
Sbjct: 3 EVEEFKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLM 62
Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLAL 111
+ +++ ++IA +E I + A + AK VL
Sbjct: 63 MH----SVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEG 105
Score = 68.3 bits (167), Expect = 8e-13
Identities = 8/89 (8%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183
+ + + E + + + +D ++ L + + +
Sbjct: 18 FIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL-AARNVKEAE 76
Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYM 212
+L + IE I + ++A+ +
Sbjct: 77 QVITILQIANAIEDISNAAGDLAKMVLEG 105
>2p11_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 2.20A {Burkholderia xenovorans LB400}
(A:1-21,A:111-231)
Length = 142
Score = 29.5 bits (66), Expect = 0.40
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLA---------HKVIDNDV- 54
ILS D ++ F R+I G+ V+ V +I + L H V +D
Sbjct: 27 ILS--DGDVVFQPRKIARSGL--WDEVEGRVLIYIHKELXLDQVXECYPARHYVXVDDKL 82
Query: 55 -VLDQLERDIGDKAIITIAKRQP-MASDLREIVGSIKIAADLERIGDLAKNTAKRVLA 110
+L ++ G + + T+ RQ A D +EI +ERIGDL + A+ +LA
Sbjct: 83 RILAAXKKAWGAR-LTTVFPRQGHYAFDPKEISSHPPADVTVERIGDLVEXDAEWLLA 139
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} (A:166-251)
Length = 86
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 161 DAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMT 213
DA T F++LLT R+ L L ++ +R + + +Y+T
Sbjct: 18 DAFAT--FKDLLT------RHKLLSAEFL--EQHYDRFFSEYEKLLHSENYVT 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A* (A:494-600,A:749-842)
Length = 201
Score = 26.1 bits (57), Expect = 3.6
Identities = 8/101 (7%), Positives = 22/101 (21%), Gaps = 8/101 (7%)
Query: 106 KRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRD-------- 157
+ V L Q++ ++ V +S
Sbjct: 61 QPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSGRGGTVYVLDEPT 120
Query: 158 GELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERI 198
L + L +++ + H + + +
Sbjct: 121 TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 161
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics,
PSI-2, protein structure initiative; 2.20A
{Streptococcus pneumoniae TIGR4} (A:)
Length = 130
Score = 26.2 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 31 VDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70
DS+ + I GD V + V N +V+D +RD D+ ++T
Sbjct: 90 FDSANQRXIIGDDVKIYTVNGNQIVVDDXDRDPSDQIVLT 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA;
heptameric ring, heptamer, ring, oligomer, RAD51
polymerization motif; HET: DNA; 2.85A {Pyrococcus
furiosus} (A:1-95)
Length = 95
Score = 25.1 bits (55), Expect = 7.9
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 56 LDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFG 115
+ +++ + +P + + KI +E + + TA++ L +
Sbjct: 6 VKEIDE-FEELGF------EPATEETPKKKKKEKIIRSIEDLPGVGPATAEK-LREAGYD 57
Query: 116 VPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICN 155
T+E +A S +L E+ + S I
Sbjct: 58 -------TLEAIAVASPIELKEVAGI----SEGTALKIIQ 86
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,722,044
Number of extensions: 74700
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 20
Length of query: 229
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 143
Effective length of database: 2,048,819
Effective search space: 292981117
Effective search space used: 292981117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)