RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] (229 letters) >1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} (A:) Length = 227 Score = 144 bits (365), Expect = 7e-36 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 1/224 (0%) Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63 +EL+ ++++ + ++ +D + A + + LA +VI D +D LE DI Sbjct: 4 GGGXKLFKELEETKEQVIKXAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDI 63 Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWT 123 + I IA QP A DLR I G KI +DLER GD A+N A+R + L + V Sbjct: 64 ERRCIRXIALYQPEAGDLRXIXGIYKIVSDLERXGDEAENIAERAILLAEEPPLKPYVN- 122 Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183 I +E+ E +++ + + + T + + +D +D ++ L REL TY++EDPRNI Sbjct: 123 INFXSEIVKEXVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELXTYVLEDPRNIK 182 Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227 HL F +++ ERI DH N+AE Y++ G + ++++ Sbjct: 183 RAXHLSFVARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEKG 226 Score = 37.9 bits (87), Expect = 0.001 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDP---RNITL 184 A+L E + + + ++ E + + D +D + + R + + ++ Sbjct: 24 AKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRXIALYQPEAGDLRX 83 Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDC 228 + ++ER GD NIAE + Sbjct: 84 IXGIYKIVSDLERXGDEAENIAERAILLAEEPPLKPYVNINFXS 127 >1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} (A:) Length = 217 Score = 139 bits (350), Expect = 4e-34 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 1/211 (0%) Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64 + + ++L L +++EMG ++ + ++ AF + LA VID D +D LE ++ Sbjct: 1 MRETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVN 60 Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124 D A+ IA +QP+A+DLR IV +IKIA+D+ERI D A N AK + + Sbjct: 61 DFALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKAC-IRIGGQPFVMDIGPL 119 Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184 + L+ + +S + Y I + D +D + + LL D + Sbjct: 120 VLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQ 179 Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215 L ++ IER DH TNIAE + Y+ G Sbjct: 180 MNVLALVARYIERTADHATNIAEHLVYLVKG 210 >2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} (A:) Length = 216 Score = 137 bits (346), Expect = 1e-33 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 1/214 (0%) Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64 + + +D EL L + + +G + + ++ A D +A +I+ D ++Q + I Sbjct: 1 MRNQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIE 60 Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124 +A +QP SDLR ++ + +DLER+GD AK V + Sbjct: 61 LTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAV-LQLKENQLAPDEEQL 119 Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184 + +LSL L+++L + K SI +D ++D + +L +E++ M + +I Sbjct: 120 HQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPN 179 Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQP 218 T L+ ++ER D++ NI E + Y+ TG Sbjct: 180 GTQYLYIIGHLERFADYIANICERLVYLETGELV 213 >1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} (B:) Length = 235 Score = 135 bits (340), Expect = 5e-33 Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 1/225 (0%) Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64 + +E+++ + +++ G KM +S+ + +E + LA +VI ++ V+DQ+E +I Sbjct: 1 MNRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQ 60 Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTI 124 +KA+ + P+ L + I++A +E I D + AK VL L + L Sbjct: 61 EKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPLKPLEDIP 120 Query: 125 EPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITL 184 +A + E L L ++ + EK+ +C D ++D ++ + ELL YMME P+ + Sbjct: 121 A-MANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKR 179 Query: 185 CTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229 LL + NIE I D+ TNI E YM G + Sbjct: 180 ALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHDELLLFK 224 >3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} (A:) Length = 227 Score = 127 bits (320), Expect = 1e-30 Identities = 17/217 (7%), Positives = 66/217 (30%), Gaps = 6/217 (2%) Query: 1 MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE 60 M S + + + ++ V V + +E Sbjct: 13 MKNSFFSKFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQI---KDME 69 Query: 61 RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120 R+ + + + +A+ ++ + D ++AKR++ + Sbjct: 70 REGDRLTHLIFDELSTTFITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESG 129 Query: 121 VWTIEPLAELSLEQLSEILDVYGS--RSTEKTQSICNRDGELDAMHTSLFRELLTYMMED 178 + + + +D + ++ + + C + +++ ++ +T + E+ Sbjct: 130 KELSRLI-HEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEE 188 Query: 179 PRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTG 215 ++ + +E+ D ++ + + + Sbjct: 189 EKDCIELIKIKEIMHELEKTTDAAEHVGKILKNLIVK 225 Score = 43.2 bits (101), Expect = 3e-05 Identities = 5/106 (4%), Positives = 29/106 (27%) Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183 ++ L+++ +++ + + +++ L + + Sbjct: 32 LKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPF 91 Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229 + + ++ + D + + A+ I + Sbjct: 92 DREDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIH 137 >2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* (A:) Length = 227 Score = 122 bits (306), Expect = 5e-29 Identities = 20/213 (9%), Positives = 57/213 (26%), Gaps = 5/213 (2%) Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63 + + L ++ + + ++++ + + ++ + D L+R+I Sbjct: 10 VFAKSPIKPLQEHXDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREI 69 Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVW- 122 + L + KIA + I + L Sbjct: 70 RLTLPSGLFXPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRC 129 Query: 123 --TIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLT--YMMED 178 + ++ E + + R + N ++ L +L + +E Sbjct: 130 IDAVGLAQQVINELDDLLEAGFRGREVDFVAKXINELDIIEEDTDDLQIQLRRQLFALES 189 Query: 179 PRNITLCTHLLFCSKNIERIGDHVTNIAETIHY 211 N L + + + D + + Sbjct: 190 ELNPVDVXFLYKTIEWVGGLADLAERVGSRLEL 222 >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} (A:1-107) Length = 107 Score = 83.7 bits (207), Expect = 2e-17 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIG 64 + + E + +EM MVD + + + GD +A +V++ + +D L + Sbjct: 3 EVEEFKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLM 62 Query: 65 DKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLAL 111 + +++ ++IA +E I + A + AK VL Sbjct: 63 MH----SVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEG 105 Score = 68.3 bits (167), Expect = 8e-13 Identities = 8/89 (8%), Positives = 27/89 (30%), Gaps = 1/89 (1%) Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183 + + + E + + + +D ++ L + + + Sbjct: 18 FIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVL-AARNVKEAE 76 Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYM 212 +L + IE I + ++A+ + Sbjct: 77 QVITILQIANAIEDISNAAGDLAKMVLEG 105 >2p11_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.20A {Burkholderia xenovorans LB400} (A:1-21,A:111-231) Length = 142 Score = 29.5 bits (66), Expect = 0.40 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%) Query: 5 ILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLA---------HKVIDNDV- 54 ILS D ++ F R+I G+ V+ V +I + L H V +D Sbjct: 27 ILS--DGDVVFQPRKIARSGL--WDEVEGRVLIYIHKELXLDQVXECYPARHYVXVDDKL 82 Query: 55 -VLDQLERDIGDKAIITIAKRQP-MASDLREIVGSIKIAADLERIGDLAKNTAKRVLA 110 +L ++ G + + T+ RQ A D +EI +ERIGDL + A+ +LA Sbjct: 83 RILAAXKKAWGAR-LTTVFPRQGHYAFDPKEISSHPPADVTVERIGDLVEXDAEWLLA 139 >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} (A:166-251) Length = 86 Score = 27.7 bits (62), Expect = 1.4 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%) Query: 161 DAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMT 213 DA T F++LLT R+ L L ++ +R + + +Y+T Sbjct: 18 DAFAT--FKDLLT------RHKLLSAEFL--EQHYDRFFSEYEKLLHSENYVT 60 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:494-600,A:749-842) Length = 201 Score = 26.1 bits (57), Expect = 3.6 Identities = 8/101 (7%), Positives = 22/101 (21%), Gaps = 8/101 (7%) Query: 106 KRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRD-------- 157 + V L Q++ ++ V +S Sbjct: 61 QPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSGRGGTVYVLDEPT 120 Query: 158 GELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERI 198 L + L +++ + H + + + Sbjct: 121 TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 161 >3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae TIGR4} (A:) Length = 130 Score = 26.2 bits (57), Expect = 3.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Query: 31 VDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70 DS+ + I GD V + V N +V+D +RD D+ ++T Sbjct: 90 FDSANQRXIIGDDVKIYTVNGNQIVVDDXDRDPSDQIVLT 129 >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95) Length = 95 Score = 25.1 bits (55), Expect = 7.9 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 19/100 (19%) Query: 56 LDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFG 115 + +++ + +P + + KI +E + + TA++ L + Sbjct: 6 VKEIDE-FEELGF------EPATEETPKKKKKEKIIRSIEDLPGVGPATAEK-LREAGYD 57 Query: 116 VPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICN 155 T+E +A S +L E+ + S I Sbjct: 58 -------TLEAIAVASPIELKEVAGI----SEGTALKIIQ 86 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.136 0.383 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,722,044 Number of extensions: 74700 Number of successful extensions: 184 Number of sequences better than 10.0: 1 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 20 Length of query: 229 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 143 Effective length of database: 2,048,819 Effective search space: 292981117 Effective search space used: 292981117 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.7 bits)