RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] (229 letters) >2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Length = 216 Score = 161 bits (407), Expect = 2e-40 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%) Query: 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66 + +D EL L + + +G + + ++ A D +A +I+ D ++Q + I Sbjct: 3 NQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELT 62 Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126 +A +QP SDLR ++ + +DLER+GD AK VL L+ + + Sbjct: 63 CARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEE-QLHQ 121 Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186 + +LSL L+++L + K SI +D ++D + +L +E++ M + +I T Sbjct: 122 MGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPNGT 181 Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215 L+ ++ER D++ NI E + Y+ TG Sbjct: 182 QYLYIIGHLERFADYIANICERLVYLETG 210 Score = 34.4 bits (78), Expect = 0.023 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%) Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFREL---LTYMMEDPRNIT 183 L +L LE S+ L S+ E + I N+D ++ +++ L ++ Sbjct: 19 LGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLR 78 Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226 ++ ++ER+GDH+ IA+ + + E + Sbjct: 79 FVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEEQLHQ 121 >1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1 Length = 235 Score = 156 bits (395), Expect = 4e-39 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%) Query: 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKA 67 +E+++ + +++ G KM +S+ + +E + LA +VI ++ V+DQ+E +I +KA Sbjct: 4 LLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKA 63 Query: 68 IITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPL 127 + + P+ L + I++A +E I D + AK VL L K + I + Sbjct: 64 MEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPL-KPLEDIPAM 122 Query: 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTH 187 A + E L L ++ + EK+ +C D ++D ++ + ELL YMME P+ + Sbjct: 123 ANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALL 182 Query: 188 LLFCSKNIERIGDHVTNIAETIHYMTTG 215 LL + NIE I D+ TNI E YM G Sbjct: 183 LLEIAGNIEIIADYATNIVEVSVYMVQG 210 >1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A Length = 227 Score = 153 bits (386), Expect = 4e-38 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%) Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68 +EL+ ++++M + ++ +D + A + + LA +VI D +D LE DI + I Sbjct: 9 LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCI 68 Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128 IA QP A DLR I+G KI +DLER+GD A+N A+R + L P K I ++ Sbjct: 69 RMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAI-LLAEEPPLKPYVNINFMS 127 Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188 E+ E +++ + + + T + + +D +D ++ L REL+TY++EDPRNI HL Sbjct: 128 EIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHL 187 Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215 F +++ ERI DH N+AE Y++ G Sbjct: 188 SFVARHYERIADHAENVAEAAIYLSEG 214 >1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1 Length = 217 Score = 145 bits (367), Expect = 7e-36 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 1/209 (0%) Query: 7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66 + ++L L +++EMG ++ + ++ AF + LA VID D +D LE ++ D Sbjct: 3 ETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDF 62 Query: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126 A+ IA +QP+A+DLR IV +IKIA+D+ERI D A N AK + + + + Sbjct: 63 ALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVL- 121 Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186 + L+ + +S + Y I + D +D + + LL D + Sbjct: 122 MYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQMN 181 Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215 L ++ IER DH TNIAE + Y+ G Sbjct: 182 VLALVARYIERTADHATNIAEHLVYLVKG 210 Score = 45.6 bits (107), Expect = 1e-05 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63 + + +V M ++ MV +++ A+ D LA ++ D D +D+ ++ Sbjct: 103 ACIRIGGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEM 162 Query: 64 GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRV 108 +++ +AK + L ++ +A +ER D A N A+ + Sbjct: 163 -MASLLAVAKTDA--ATLAQMNVLALVARYIERTADHATNIAEHL 204 >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Length = 205 Score = 69.8 bits (170), Expect = 5e-13 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 9 YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68 + E + +EM MVD + + + GD +A +V++ + +D L + Sbjct: 7 FKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMH-- 64 Query: 69 ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLV 121 + +++ ++IA +E I + A + AK VL K Sbjct: 65 --SVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKET 115 Score = 36.7 bits (84), Expect = 0.005 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%) Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186 + + + E + + + +D ++ L + + Sbjct: 21 MKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLM-MHSVLAARNVKEAEQVI 79 Query: 187 HLLFCSKNIERIGDHVTNIAETIHYM 212 +L + IE I + ++A+ + Sbjct: 80 TILQIANAIEDISNAAGDLAKMVLEG 105 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.4 bits (102), Expect = 4e-05 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 77/251 (30%) Query: 7 SAYDEE-----------LDFLSRRIVEMGI-----VSRKMVDSSVRAFIEGD---TVLAH 47 A D+E L ++S + + V + ++EG+ + A Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107 Query: 48 KVIDNDVVLDQLERDIGDKAIITI---AKRQPMASDLREIVGSIKIAADLERIGDLAKNT 104 + +ND L + K +I A+ + S A + + Sbjct: 108 LLQENDTTLVK------TKELIKNYITARIM-AKRPFDKKSNSALFRA-------VGEGN 153 Query: 105 AKRVLALQMFG----VPRKLVWTIEPLAELSLEQLSEILDVYGS-------RSTEKTQSI 153 A+ ++A+ FG + E+L ++ Y S E + Sbjct: 154 AQ-LVAI--FGGQGN------------TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198 Query: 154 CNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE--RIGDHVTNIAETIHY 211 + + + T +L + +E+P N +LL S I IG V +A HY Sbjct: 199 IRTTLDAEKVFTQGL-NILEW-LENPSNTPDKDYLL--SIPISCPLIG--VIQLA---HY 249 Query: 212 MTT----GVQP 218 + T G P Sbjct: 250 VVTAKLLGFTP 260 Score = 36.5 bits (84), Expect = 0.005 Identities = 47/314 (14%), Positives = 86/314 (27%), Gaps = 130/314 (41%) Query: 9 YDEEL--------DFLSRRIVEMGIVSRKMVDSSVRA---FIEGDTVLA-----HKVIDN 52 Y EEL + I +++ +++ A F +G +L D Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228 Query: 53 DVVLD-----------QLERDIGDKA--IIT--IAKRQPMASDLRE-----------IVG 86 D +L QL A ++T + P +LR +V Sbjct: 229 DYLLSIPISCPLIGVIQL-------AHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVT 279 Query: 87 SIKIAA--DLERIGDLAKNTAKRVLALQMF--GV------PRKLVW------TIE----- 125 ++ IA E + A VL F GV P + ++E Sbjct: 280 AVAIAETDSWESFFVSVR-KAITVL----FFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334 Query: 126 P-----LAELSLEQLSEILDVYGSRSTEKTQSICNRD-GELDAMHTSLFRELLTYMMEDP 179 P ++ L+ EQ+ + ++ N + SL Sbjct: 335 PSPMLSISNLTQEQVQDYVNK------------TNSHLPAGKQVEISLV--------NGA 374 Query: 180 RNIT----------LCTHL--LFCSKNIE--RIGDH------VTN----IAETIH--YMT 213 +N+ L L ++ RI +N +A H + Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLV 433 Query: 214 TGVQPYKERVRKED 227 + + K + Sbjct: 434 PASDLINKDLVKNN 447 Score = 32.6 bits (74), Expect = 0.079 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 26/77 (33%) Query: 57 DQLERDIGDKAIITIAKRQ---PM-----ASDLREIVGSIKIAADLERIGDLAKNTAKRV 108 D + +D+ + + + P+ SDLR + GSI ERI D V Sbjct: 437 DLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSI-----SERIVDCI--IRLPV 488 Query: 109 ---LALQM-------FG 115 Q FG Sbjct: 489 KWETTTQFKATHILDFG 505 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 42.5 bits (99), Expect = 8e-05 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 30/132 (22%) Query: 26 VSRKMVDSS-VRAFIEGDTVLAHKVIDN---DVVLDQLERDIGDKAIITIAKRQPMASDL 81 + +++V++S VR + +T L HKV++ D Q+E I R + D Sbjct: 744 LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVE----------IQPRANIQLDF 793 Query: 82 REI--VGSIK-IA-ADLERIGDLAKNTAKRVLALQMF------GVPRKLVWTIEPLAELS 131 E+ +K IA A+LE + DL +RV+ + F G R W +E E S Sbjct: 794 PELKPYKQVKQIAPAELEGLLDL-----ERVIVVTGFAEVGPWGSARTR-WEMEAFGEFS 847 Query: 132 LEQLSEILDVYG 143 LE E+ + G Sbjct: 848 LEGCVEMAWIMG 859 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 33.1 bits (74), Expect = 0.054 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 23/53 (43%) Query: 73 KRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIE 125 ++Q A L+++ S+K+ AD D A LA++ T+E Sbjct: 18 EKQ--A--LKKLQASLKLYAD-----DSAP-----ALAIKA---------TME 47 >3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Length = 227 Score = 27.6 bits (61), Expect = 2.1 Identities = 12/125 (9%), Positives = 50/125 (40%), Gaps = 3/125 (2%) Query: 90 IAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGS--RST 147 +A+ ++ + D ++AKR + + + + L + + +D + ++ Sbjct: 99 LASCMDDVIDGINSSAKR-IVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNP 157 Query: 148 EKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAE 207 + + C + +++ ++ +T + E+ ++ + +E+ D ++ + Sbjct: 158 KPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEKTTDAAEHVGK 217 Query: 208 TIHYM 212 + + Sbjct: 218 ILKNL 222 >3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae TIGR4} Length = 130 Score = 26.9 bits (59), Expect = 3.9 Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 31 VDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70 DS+ + I GD V + V N +V+D ++RD D+ ++T Sbjct: 90 FDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLT 129 >1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3 PDB: 2p6b_A 1tco_A* 1mf8_A* 1m63_A* 2jog_A Length = 521 Score = 25.7 bits (56), Expect = 8.8 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 9/85 (10%) Query: 4 HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63 + + + L F+ ++ EM + +V D + + + + + I Sbjct: 345 NFMDVFTWSLPFVGEKVTEMLV--------NVLNICSDDELGSEEDGFDGATAAARKEVI 396 Query: 64 GDKAIITIAKRQPMASDLREIVGSI 88 +K I I K + S LRE S+ Sbjct: 397 RNK-IRAIGKMARVFSVLREESESV 420 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.136 0.383 Gapped Lambda K H 0.267 0.0573 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,955,722 Number of extensions: 87325 Number of successful extensions: 285 Number of sequences better than 10.0: 1 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 26 Length of query: 229 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 140 Effective length of database: 3,535,514 Effective search space: 494971960 Effective search space used: 494971960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.3 bits)