RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780703|ref|YP_003065116.1| putative phosphate transport
system protein [Candidatus Liberibacter asiaticus str. psy62]
         (229 letters)



>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein,
           structural genomics, PSI-2, protein structure
           initiative; 2.40A {Streptococcus pneumoniae TIGR4}
          Length = 216

 Score =  161 bits (407), Expect = 2e-40
 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 7   SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
           + +D EL  L +  + +G +  +    ++ A    D  +A  +I+ D  ++Q +  I   
Sbjct: 3   NQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELT 62

Query: 67  AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
               +A +QP  SDLR ++  +   +DLER+GD     AK VL L+   +       +  
Sbjct: 63  CARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEE-QLHQ 121

Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
           + +LSL  L+++L  +      K  SI  +D ++D  + +L +E++  M +   +I   T
Sbjct: 122 MGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPNGT 181

Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
             L+   ++ER  D++ NI E + Y+ TG
Sbjct: 182 QYLYIIGHLERFADYIANICERLVYLETG 210



 Score = 34.4 bits (78), Expect = 0.023
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFREL---LTYMMEDPRNIT 183
           L +L LE  S+ L    S+  E  + I N+D  ++   +++       L        ++ 
Sbjct: 19  LGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLR 78

Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226
               ++    ++ER+GDH+  IA+ +  +        E    +
Sbjct: 79  FVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEEQLHQ 121


>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport,
           PST, structural genomics, berkeley structural genomics
           center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
          Length = 235

 Score =  156 bits (395), Expect = 4e-39
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)

Query: 8   AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKA 67
             +E+++   + +++ G    KM  +S+ + +E +  LA +VI ++ V+DQ+E +I +KA
Sbjct: 4   LLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKA 63

Query: 68  IITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPL 127
           +  +    P+   L  +   I++A  +E I D   + AK VL L       K +  I  +
Sbjct: 64  MEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDIAKNVLELMEEPPL-KPLEDIPAM 122

Query: 128 AELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTH 187
           A  + E L   L ++   + EK+  +C  D ++D ++  +  ELL YMME P+ +     
Sbjct: 123 ANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREELLLYMMESPKYVKRALL 182

Query: 188 LLFCSKNIERIGDHVTNIAETIHYMTTG 215
           LL  + NIE I D+ TNI E   YM  G
Sbjct: 183 LLEIAGNIEIIADYATNIVEVSVYMVQG 210


>1t72_A Phosphate transport system protein PHOU homolog; helix bundle,
           structural genomics, BSGC structure funded by NIH,
           protein structure initiative; 2.90A {Aquifex aeolicus}
           SCOP: a.7.12.1 PDB: 1t8b_A
          Length = 227

 Score =  153 bits (386), Expect = 4e-38
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%)

Query: 9   YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
             +EL+    ++++M  + ++ +D +  A  + +  LA +VI  D  +D LE DI  + I
Sbjct: 9   LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCI 68

Query: 69  ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
             IA  QP A DLR I+G  KI +DLER+GD A+N A+R + L     P K    I  ++
Sbjct: 69  RMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAI-LLAEEPPLKPYVNINFMS 127

Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
           E+  E +++ +  +  + T   + +  +D  +D ++  L REL+TY++EDPRNI    HL
Sbjct: 128 EIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHL 187

Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
            F +++ ERI DH  N+AE   Y++ G
Sbjct: 188 SFVARHYERIADHAENVAEAAIYLSEG 214


>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
           regulator, structural genomics, protein structure
           initiative, PSI; 2.50A {Geobacillus stearothermophilus}
           SCOP: a.7.12.1
          Length = 217

 Score =  145 bits (367), Expect = 7e-36
 Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 7   SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
             + ++L  L  +++EMG ++   +  ++ AF   +  LA  VID D  +D LE ++ D 
Sbjct: 3   ETFADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDF 62

Query: 67  AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
           A+  IA +QP+A+DLR IV +IKIA+D+ERI D A N AK  + +        +   +  
Sbjct: 63  ALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVL- 121

Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
           +  L+ + +S  +  Y          I + D  +D  +  +   LL     D   +    
Sbjct: 122 MYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASLLAVAKTDAATLAQMN 181

Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
            L   ++ IER  DH TNIAE + Y+  G
Sbjct: 182 VLALVARYIERTADHATNIAEHLVYLVKG 210



 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 4   HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
             +    +        +V M  ++  MV +++ A+   D  LA ++ D D  +D+   ++
Sbjct: 103 ACIRIGGQPFVMDIGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEM 162

Query: 64  GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRV 108
              +++ +AK     + L ++     +A  +ER  D A N A+ +
Sbjct: 163 -MASLLAVAKTDA--ATLAQMNVLALVARYIERTADHATNIAEHL 204


>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken
           structural genomics/proteomics initiative, RSGI, NPPSFA;
           1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1
           PDB: 2bkn_A 2bko_A 2bkp_A
          Length = 205

 Score = 69.8 bits (170), Expect = 5e-13
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 9   YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
           +  E   +    +EM      MVD +  + + GD  +A +V++ +  +D L   +     
Sbjct: 7   FKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMH-- 64

Query: 69  ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLV 121
                      +  +++  ++IA  +E I + A + AK VL         K  
Sbjct: 65  --SVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKET 115



 Score = 36.7 bits (84), Expect = 0.005
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
           + +     +            E  + +   +  +D ++  L          + +      
Sbjct: 21  MKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLM-MHSVLAARNVKEAEQVI 79

Query: 187 HLLFCSKNIERIGDHVTNIAETIHYM 212
            +L  +  IE I +   ++A+ +   
Sbjct: 80  TILQIANAIEDISNAAGDLAKMVLEG 105


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 77/251 (30%)

Query: 7   SAYDEE-----------LDFLSRRIVEMGI-----VSRKMVDSSVRAFIEGD---TVLAH 47
            A D+E           L ++S  +    +     V    +      ++EG+    + A 
Sbjct: 48  FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107

Query: 48  KVIDNDVVLDQLERDIGDKAIITI---AKRQPMASDLREIVGSIKIAADLERIGDLAKNT 104
            + +ND  L +       K +I     A+         +   S    A       + +  
Sbjct: 108 LLQENDTTLVK------TKELIKNYITARIM-AKRPFDKKSNSALFRA-------VGEGN 153

Query: 105 AKRVLALQMFG----VPRKLVWTIEPLAELSLEQLSEILDVYGS-------RSTEKTQSI 153
           A+ ++A+  FG                 +   E+L ++   Y          S E    +
Sbjct: 154 AQ-LVAI--FGGQGN------------TDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198

Query: 154 CNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIE--RIGDHVTNIAETIHY 211
                + + + T     +L + +E+P N     +LL  S  I    IG  V  +A   HY
Sbjct: 199 IRTTLDAEKVFTQGL-NILEW-LENPSNTPDKDYLL--SIPISCPLIG--VIQLA---HY 249

Query: 212 MTT----GVQP 218
           + T    G  P
Sbjct: 250 VVTAKLLGFTP 260



 Score = 36.5 bits (84), Expect = 0.005
 Identities = 47/314 (14%), Positives = 86/314 (27%), Gaps = 130/314 (41%)

Query: 9   YDEEL--------DFLSRRIVEMGIVSRKMVDSSVRA---FIEGDTVLA-----HKVIDN 52
           Y EEL          +   I        +++ +++ A   F +G  +L          D 
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228

Query: 53  DVVLD-----------QLERDIGDKA--IIT--IAKRQPMASDLRE-----------IVG 86
           D +L            QL       A  ++T  +    P   +LR            +V 
Sbjct: 229 DYLLSIPISCPLIGVIQL-------AHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVT 279

Query: 87  SIKIAA--DLERIGDLAKNTAKRVLALQMF--GV------PRKLVW------TIE----- 125
           ++ IA     E      +  A  VL    F  GV      P   +       ++E     
Sbjct: 280 AVAIAETDSWESFFVSVR-KAITVL----FFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334

Query: 126 P-----LAELSLEQLSEILDVYGSRSTEKTQSICNRD-GELDAMHTSLFRELLTYMMEDP 179
           P     ++ L+ EQ+ + ++              N        +  SL            
Sbjct: 335 PSPMLSISNLTQEQVQDYVNK------------TNSHLPAGKQVEISLV--------NGA 374

Query: 180 RNIT----------LCTHL--LFCSKNIE--RIGDH------VTN----IAETIH--YMT 213
           +N+           L   L        ++  RI          +N    +A   H   + 
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLV 433

Query: 214 TGVQPYKERVRKED 227
                  + + K +
Sbjct: 434 PASDLINKDLVKNN 447



 Score = 32.6 bits (74), Expect = 0.079
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 26/77 (33%)

Query: 57  DQLERDIGDKAIITIAKRQ---PM-----ASDLREIVGSIKIAADLERIGDLAKNTAKRV 108
           D + +D+    + +   +    P+      SDLR + GSI      ERI D        V
Sbjct: 437 DLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSI-----SERIVDCI--IRLPV 488

Query: 109 ---LALQM-------FG 115
                 Q        FG
Sbjct: 489 KWETTTQFKATHILDFG 505


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 30/132 (22%)

Query: 26  VSRKMVDSS-VRAFIEGDTVLAHKVIDN---DVVLDQLERDIGDKAIITIAKRQPMASDL 81
           + +++V++S VR  +  +T L HKV++    D    Q+E          I  R  +  D 
Sbjct: 744 LRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVE----------IQPRANIQLDF 793

Query: 82  REI--VGSIK-IA-ADLERIGDLAKNTAKRVLALQMF------GVPRKLVWTIEPLAELS 131
            E+     +K IA A+LE + DL     +RV+ +  F      G  R   W +E   E S
Sbjct: 794 PELKPYKQVKQIAPAELEGLLDL-----ERVIVVTGFAEVGPWGSARTR-WEMEAFGEFS 847

Query: 132 LEQLSEILDVYG 143
           LE   E+  + G
Sbjct: 848 LEGCVEMAWIMG 859


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.1 bits (74), Expect = 0.054
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 23/53 (43%)

Query: 73  KRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIE 125
           ++Q  A  L+++  S+K+ AD     D A       LA++          T+E
Sbjct: 18  EKQ--A--LKKLQASLKLYAD-----DSAP-----ALAIKA---------TME 47


>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural
           genomics, joint center for structural genomics, JCSG;
           1.93A {Bacteroides thetaiotaomicron}
          Length = 227

 Score = 27.6 bits (61), Expect = 2.1
 Identities = 12/125 (9%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 90  IAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGS--RST 147
           +A+ ++ + D   ++AKR + +       +    +  L       + + +D   +  ++ 
Sbjct: 99  LASCMDDVIDGINSSAKR-IVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNP 157

Query: 148 EKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAE 207
           +  +  C +  +++     ++   +T + E+ ++      +      +E+  D   ++ +
Sbjct: 158 KPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEKTTDAAEHVGK 217

Query: 208 TIHYM 212
            +  +
Sbjct: 218 ILKNL 222


>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2,
           protein structure initiative; 2.20A {Streptococcus
           pneumoniae TIGR4}
          Length = 130

 Score = 26.9 bits (59), Expect = 3.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 31  VDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70
            DS+ +  I GD V  + V  N +V+D ++RD  D+ ++T
Sbjct: 90  FDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLT 129


>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
           immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
           PDB: 2p6b_A 1tco_A* 1mf8_A* 1m63_A* 2jog_A
          Length = 521

 Score = 25.7 bits (56), Expect = 8.8
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 4   HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
           + +  +   L F+  ++ EM +        +V      D + + +   +       +  I
Sbjct: 345 NFMDVFTWSLPFVGEKVTEMLV--------NVLNICSDDELGSEEDGFDGATAAARKEVI 396

Query: 64  GDKAIITIAKRQPMASDLREIVGSI 88
            +K I  I K   + S LRE   S+
Sbjct: 397 RNK-IRAIGKMARVFSVLREESESV 420


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,955,722
Number of extensions: 87325
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 26
Length of query: 229
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 140
Effective length of database: 3,535,514
Effective search space: 494971960
Effective search space used: 494971960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)