RPSBLAST alignment for GI: 254780704 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 156 bits (396), Expect = 7e-39
Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 15/228 (6%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
++ YG+ + LF ++L +P+ + AL+G +G GK+T L+ + + +G I
Sbjct: 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRF 59
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
DG++I R RA +G V + FP+ ++ +N+ G KA ++++ E+
Sbjct: 60 DGRDITGLPPHE-RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL 118
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
F +K+R A LSGG+QQ + IARAL P+++L+DEP L P +
Sbjct: 119 -------FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171
Query: 190 EELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
E I ELR+ +TI++V + + A ++ RA + G +V E ++
Sbjct: 172 FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219