RPSBLAST alignment for GI: 254780704 and conserved domain: cd03271
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
Score = 50.2 bits (120), Expect = 6e-07
Identities = 49/234 (20%), Positives = 93/234 (39%), Gaps = 58/234 (24%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81
L +I++ IP +T + G SG GKS+ + N+T+ + L K + D
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLI------NDTLYPAL---ARRLHLKKEQPGNHD 61
Query: 82 VVRLRARVGMVF----------QRPNP--------FPKSIYDNVAYGPR-------IHGL 116
+ + V R NP + ++ V G R +
Sbjct: 62 RIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYK 121
Query: 117 GNNKADIDQIVEMSLKKASLFNE------VKDRLFHDASL-----------LSGGQQQRV 159
G + I +++M++++A F E K + D L LSGG+ QR+
Sbjct: 122 GKS---IADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRI 178
Query: 160 CIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSM 209
+A+ L + + ++DEP + L + E++ L + T+V++ H++
Sbjct: 179 KLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232