RPSBLAST alignment for GI: 254780704 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 150 bits (380), Expect = 4e-37
Identities = 77/240 (32%), Positives = 137/240 (57%), Gaps = 16/240 (6%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
G+ + D++L + + + ++G SG GKST LRC+NR+ E +G++++DG++I
Sbjct: 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-----SGKVLIDGQDIA 89
Query: 77 QSSVDVVR--LRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
S +R R ++ MVFQ P +++ +NVA+G + G+ +A+ ++ +L+
Sbjct: 90 AMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP--RAEREERAAEALEL 147
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
L + LSGG QQRV +ARALAV+P+++LMDE SALDP+ +++ +
Sbjct: 148 VGL----EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203
Query: 194 HELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251
L+ L TIV +TH + +A R+ R A+ G LV+ +++ T P++ +++ G
Sbjct: 204 LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRG 263