RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(254 letters)
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 486 bits (1253), Expect = e-138
Identities = 185/250 (74%), Positives = 213/250 (85%)
Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
KM + VSV YGEK+ALFD++L IP+ +VTA IGPSGCGKSTFLRCLNRMN+TID C
Sbjct: 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77
Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124
TG+I LDG++IY +DVV LRARVGMVFQ+PNPFPKSIY+NVAYGPRIHGL +KA++D
Sbjct: 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELD 137
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
+IVE SL+KA L+ EVKDRL + LSGGQQQR+CIARA+AV+PEVILMDEPCSALDPI
Sbjct: 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
ATA VEELI ELR++ TIVIVTHSMQQAARVSQR A FH+G+LVE DT+KMFT P D R
Sbjct: 198 ATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDPR 257
Query: 245 TQDYIMGRFG 254
TQDYI GRFG
Sbjct: 258 TQDYITGRFG 267
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 436 bits (1124), Expect = e-123
Identities = 154/245 (62%), Positives = 194/245 (79%), Gaps = 1/245 (0%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+++ YG+K+ALFDI+++IP+N VTA IGPSGCGKST LRC NRMN+ +DNC GEI
Sbjct: 29 RNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR 88
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
LDG+NIY VDV LR RVGMVFQRPNPFPKSIY+NV YG R+ G+ NN+ +D+ VE
Sbjct: 89 LDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGI-NNRRVLDEAVER 147
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
SL+ A+L++EVKDRL +A LSGGQQQR+ IARA+A+ PEV+L+DEP SALDPI+T +
Sbjct: 148 SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
EELI EL+ TIVIVTH+MQQAARVS A +MG LVE DTD +FT+P+ ++T+DYI
Sbjct: 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYI 267
Query: 250 MGRFG 254
GR+G
Sbjct: 268 TGRYG 272
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 427 bits (1101), Expect = e-120
Identities = 155/243 (63%), Positives = 194/243 (79%), Gaps = 1/243 (0%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
+++ YGEK AL +INL IP+N VTALIGPSGCGKST LR LNRMN+ + G+++
Sbjct: 6 NLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130
DG++IY +DVV LR RVGMVFQ+PNPFP SIYDN+AYGPR+HG+ +K ++D+IVE S
Sbjct: 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGI-KDKKELDEIVEES 124
Query: 131 LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190
LKKA+L++EVKDRL A LSGGQQQR+CIARALAV PEV+L+DEP SALDPIAT +E
Sbjct: 125 LKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE 184
Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIM 250
ELI EL++ TIVIVTH+MQQAAR+S R A F+ G LVE T+++FT P ++RT+DYI
Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKRTEDYIS 244
Query: 251 GRF 253
GRF
Sbjct: 245 GRF 247
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 400 bits (1029), Expect = e-112
Identities = 157/250 (62%), Positives = 194/250 (77%), Gaps = 1/250 (0%)
Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
K+ + + YG+ +AL INL I +N VTALIGPSGCGKSTFLR LNRMN+ I +
Sbjct: 2 GKISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI 61
Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124
GE++LDG++IY+S +DV +LR RVGMVFQ+PNPFP SIYDNVAYGPR HG+ +K +D
Sbjct: 62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGI-KDKKKLD 120
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
+IVE SLK A+L++EVKDRL A LSGGQQQR+CIARALAV PEV+LMDEP SALDPI
Sbjct: 121 EIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 180
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
+T +EELI EL++ TIVIVTH+MQQA+R+S + A F G +VE DT +FT P D+R
Sbjct: 181 STLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKR 240
Query: 245 TQDYIMGRFG 254
T+DYI GRFG
Sbjct: 241 TEDYITGRFG 250
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 385 bits (991), Expect = e-108
Identities = 160/254 (62%), Positives = 197/254 (77%), Gaps = 1/254 (0%)
Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60
M KM + +S YG+ +AL DI+L+ QN VTALIGPSGCGKSTFLRCLNRMN+ I
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120
GEI+LDG+NIY VDVV LR RVGMVFQ+PNPFPKSI++NVAYG R++G+ + K
Sbjct: 61 GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD-K 119
Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180
A + + VE SL+ A+L++EVKDRL A LSGGQQQR+CIARALAV PEV+LMDEP SA
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
LDPIAT +EELIHEL+ TI+IVTH+MQQAARVS A F+MG L+E T+++FT P
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
Query: 241 SDQRTQDYIMGRFG 254
+++T+DYI GRFG
Sbjct: 240 REKQTEDYITGRFG 253
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 368 bits (948), Expect = e-103
Identities = 137/240 (57%), Positives = 177/240 (73%), Gaps = 3/240 (1%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YG+ AL +INL I +N VTA IGPSGCGKST LR NRM E GEI+LDG+NI
Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIH-GLGNNKADIDQIVEMSLKKA 134
D+ LRA+VGMVFQ+P PFP SIYDN+A+G R+ L ++A++D+ VE +L KA
Sbjct: 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL--SRAEMDERVEWALTKA 140
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
+L+NEVKD+L LSGGQQQR+CIAR +A+ PEV+L+DEPCSALDPI+T +EELI
Sbjct: 141 ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
EL++ T+VIVTH+MQQAAR S A ++G L+E +TD +FT P+ ++T+DYI GRFG
Sbjct: 201 ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITGRFG 260
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 366 bits (942), Expect = e-102
Identities = 157/240 (65%), Positives = 192/240 (80%), Gaps = 3/240 (1%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YGEK AL+DI + IP+N VTALIGPSGCGKST LRC NRMN+ I C TG+I+ +G+NI
Sbjct: 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI 75
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
S DVV LR ++GMVFQRPNPFPKSIY+NVAYGPRIHG NK +D IVE SLK A+
Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGE-KNKKTLDTIVEKSLKGAA 134
Query: 136 LFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
L++EVKDRL HD++L LSGGQQQR+CIAR LAVNPEVILMDEPCSALDPIATA +E+LI
Sbjct: 135 LWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193
Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
+L++ T++IVTH+MQQAARVS ++G L+E D T ++F P ++ T++YI GRFG
Sbjct: 194 DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENYITGRFG 253
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 364 bits (936), Expect = e-101
Identities = 161/249 (64%), Positives = 197/249 (79%), Gaps = 1/249 (0%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
KM S +++ YGEK+AL DINL I +N +TALIGPSGCGKSTFLRCLNRMN+ I N
Sbjct: 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE 63
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125
GE++LDGKNIY VDVV LR RVGMVFQ+PNPFP SIYDNVAYGPRIHG+ +K ++D+
Sbjct: 64 GEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGI-KDKKELDK 122
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
IVE +LKKA+L++EVKD L A LSGGQQQR+CIAR +AV P+VILMDEP SALDPI+
Sbjct: 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182
Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245
T +E+L+ EL++ TIVIVTH+MQQA+RVS A F MG L+E + T+K+F P + T
Sbjct: 183 TLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKET 242
Query: 246 QDYIMGRFG 254
+DYI GRFG
Sbjct: 243 EDYISGRFG 251
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 356 bits (916), Expect = 3e-99
Identities = 150/247 (60%), Positives = 191/247 (77%), Gaps = 4/247 (1%)
Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+ ++V YG+++AL D+++ IP+N VTA+IGPSGCGKSTFLRC+NRMN+ ID GE+
Sbjct: 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
GKN+Y + VD V LR R+GMVFQ+PNPFPKSIYDNVAYG +I G DID+ VE
Sbjct: 102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY---DGDIDERVE 158
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
SL++A+L++EVKD+L LSGGQQQR+CIARA+A +PEVILMDEP SALDP+AT+
Sbjct: 159 ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHLVEEDDTDKMFTAPSDQRTQD 247
+E+LI EL E T+VIVTH+MQQAAR+S + A+F G LVE DDTDK+F P QR +D
Sbjct: 219 IEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQRVED 278
Query: 248 YIMGRFG 254
YI G+FG
Sbjct: 279 YITGKFG 285
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 352 bits (906), Expect = 4e-98
Identities = 129/246 (52%), Positives = 178/246 (72%), Gaps = 1/246 (0%)
Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+ + V YG+K A+ I+++ +N +TALIGPSG GKST+LR LNRMN+TID TG+I
Sbjct: 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
+ G +I + ++V +R +GMVFQRPNPF KSIY+N+ + G+ +K +D+IVE
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGV-KDKKVLDEIVE 141
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
SLK+A+L+++VKD L A LSGGQQQR+CIARA+AV P+++LMDEP SALDPI+T
Sbjct: 142 TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248
+EE + EL+++ TI+IVTH+MQQAAR S A F++G L+E D T +FT P Q T DY
Sbjct: 202 LEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDY 261
Query: 249 IMGRFG 254
+ G FG
Sbjct: 262 VSGHFG 267
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 352 bits (904), Expect = 6e-98
Identities = 145/259 (55%), Positives = 188/259 (72%), Gaps = 12/259 (4%)
Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
+ + ++V YG A+ ++ L IP+N +TA IGPSGCGKST LRC NR+N+ I
Sbjct: 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124
G++ GKN+Y VD V +R R+GMVFQ+PNPFPKSIYDN+AYG RI+G K D+D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY---KGDMD 125
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
++VE SL++A+L++EVKD+L LSGGQQQR+CIARA+AV PEVILMDEPCSALDPI
Sbjct: 126 ELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFH---------MGHLVEEDDTDK 235
+T +EEL+HEL+E TI+IVTH+MQQAARVS A F+ G+LVE D T+K
Sbjct: 186 STLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245
Query: 236 MFTAPSDQRTQDYIMGRFG 254
+F +P Q T+DY+ GRFG
Sbjct: 246 IFNSPQQQATRDYVSGRFG 264
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 351 bits (903), Expect = 8e-98
Identities = 144/239 (60%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YGE AL +INL I +N VTA+IGPSGCGKST+++ LNRM E + + TG+I+ +NI
Sbjct: 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
+ S V LR VGMVFQ+PNPFPKSIYDNV YGP+IHG+ + K +D+IVE SL+ A+
Sbjct: 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT-LDEIVEKSLRGAA 152
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
+++E+KDRL +A LSGGQQQR+CIAR LA+ P+VILMDEP SALDPI+T VEEL+ E
Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
L++ +I+IVTH+MQQAAR+S + A F G++ E DDTDK+F+ PSD+RT+DYI GRFG
Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTEDYITGRFG 271
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 349 bits (898), Expect = 3e-97
Identities = 153/261 (58%), Positives = 192/261 (73%), Gaps = 12/261 (4%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
K+ + V YG+ AL +++ IP+ SVTALIGPSGCGKSTFLRCLNRMN+ I
Sbjct: 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID 104
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHG---------- 115
G + LDG++IYQ V++V LR RVGMVFQ PNPFPKSI +N++YGPR HG
Sbjct: 105 GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARL 164
Query: 116 LGNNKAD-IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILM 174
LG + D D++VE SL++A+L++EV DRL +A LSGGQQQR+CIAR LAV+PEVILM
Sbjct: 165 LGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224
Query: 175 DEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHLVEEDDT 233
DEP SALDPIAT+ +E+LI EL E T+V+VTH+MQQAAR+S + A+F G LVE DDT
Sbjct: 225 DEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDT 284
Query: 234 DKMFTAPSDQRTQDYIMGRFG 254
DK+F P QR +DYI G+FG
Sbjct: 285 DKIFENPESQRVEDYITGKFG 305
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 347 bits (892), Expect = 2e-96
Identities = 144/252 (57%), Positives = 187/252 (74%), Gaps = 8/252 (3%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+++ YG A+ D+NL I SVTA IGPSGCGKST LR LNRM+E I GE++
Sbjct: 8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL 67
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVE 128
LDG+++Y VD V +R +GMVFQRPNPFP SI DNV G +++G NK D+D++VE
Sbjct: 68 LDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVE 126
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
SL+ A+L+NEVKDRL LSGGQQQR+CIARA+AV P+V+LMDEPCSALDPI+T +
Sbjct: 127 KSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM------GHLVEEDDTDKMFTAPSD 242
+E+LI+EL++ TIVIVTH+MQQAARVS + A F++ G LVE DDT+K+F+ P+
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPTQ 246
Query: 243 QRTQDYIMGRFG 254
+ T+DYI GRFG
Sbjct: 247 KATEDYISGRFG 258
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 339 bits (871), Expect = 4e-94
Identities = 151/245 (61%), Positives = 190/245 (77%), Gaps = 1/245 (0%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
N +++ YG+ AL +INL IP+N VTA+IGPSGCGKSTF++ LN M + + N TGE+
Sbjct: 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+G NI + VD+V LR +GMVFQ+ NPFP+SI+DNVAYGPRIHG NK + +IVE
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGT-KNKKKLQEIVEK 134
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
SLK +L++EVKDRL A LSGGQQQR+CIARALA NP+V+LMDEP SALDP++T +
Sbjct: 135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194
Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
EELI +L+E TIVIVTH+MQQAARVS + A F+MG LVE +DT+KMF+ P DQRT DYI
Sbjct: 195 EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTLDYI 254
Query: 250 MGRFG 254
G+FG
Sbjct: 255 TGKFG 259
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 336 bits (864), Expect = 2e-93
Identities = 147/239 (61%), Positives = 187/239 (78%), Gaps = 2/239 (0%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YGEK+AL +++++IP+NSVTALIGPSGCGKSTF+RCLNRMN+ I NC G++ ++G++I
Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
Y+ VDVV LR VGMVFQ+PNPFP SIYDNVAYGPRIHG NK D+D +VE +L+ A+
Sbjct: 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGA--NKKDLDGVVENALRSAA 139
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
L++E DRL A LSGGQQQR+CIAR LAV P++IL DEP SALDPI+TA +E+LI
Sbjct: 140 LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
L++ TIVIVTH+MQQAAR+S F MG L+E T ++F P ++ T+DYI GRFG
Sbjct: 200 LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYITGRFG 258
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 336 bits (863), Expect = 4e-93
Identities = 142/250 (56%), Positives = 186/250 (74%), Gaps = 1/250 (0%)
Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60
M++I+ + N +++ YG K+ LFDINL I + VTA IGPSGCGKSTFLRC NRMN+ +
Sbjct: 1 MSEIHASVKN-LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP 59
Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120
NC GE+ +DG ++Y +VV LRA+VGMVFQ+PNPFPKSIYDNVAYGP++HGL NK
Sbjct: 60 NCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNK 119
Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180
+D+IVE SL L+ E+ DRL A LSGGQQQR+CIARA+AV P ++LMDEPCSA
Sbjct: 120 KKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179
Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
LDP+AT +E LI EL+++ TI++VTHSM+QA +VS R A F G +VE + T ++F P
Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239
Query: 241 SDQRTQDYIM 250
+T+ YI+
Sbjct: 240 QSSKTKRYIV 249
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 334 bits (858), Expect = 1e-92
Identities = 137/254 (53%), Positives = 184/254 (72%), Gaps = 14/254 (5%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
V++ YG A+ ++ IP+ VTALIGPSGCGKST LR LNRMN+ I+ C G ++ D
Sbjct: 19 VTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
G ++Y VD V +R R+GMVFQ+PNPFPKSIY+N+A+G RI+G D+D++VE SL
Sbjct: 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY---TGDMDELVERSL 135
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
+KA++++E KD+L LSGGQQQR+CIAR +A+ PEVILMDEPCSALDPI+T +EE
Sbjct: 136 RKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE 195
Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFH-----------MGHLVEEDDTDKMFTAP 240
+HEL+++ TIVIVTH+MQQA RVS A F+ +G+LVE ++T K+F +P
Sbjct: 196 TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255
Query: 241 SDQRTQDYIMGRFG 254
+ TQDYI G+FG
Sbjct: 256 KQKATQDYISGKFG 269
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 332 bits (853), Expect = 5e-92
Identities = 148/245 (60%), Positives = 185/245 (75%), Gaps = 2/245 (0%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+ + YGE +AL INL IP VTALIGPSGCGKST LRCLNRMN+ I+ TG++
Sbjct: 7 ENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT 66
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+DG++IY + +DV LR +VGMVFQ+PNPFP SIY+NVAYG R G+ +K +D++VE
Sbjct: 67 MDGEDIYGN-IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGI-KDKKVLDEVVER 124
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
SL+ A+L++EVKDRL A LSGGQQQR+CIAR +A+ P+VILMDEP SALDPIAT +
Sbjct: 125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI 184
Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
EEL+ EL+++ TIVIVTHSMQQA R+S R A F MG LVE DDT +F+ P D RTQ Y+
Sbjct: 185 EELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV 244
Query: 250 MGRFG 254
G FG
Sbjct: 245 NGDFG 249
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 326 bits (838), Expect = 3e-90
Identities = 149/250 (59%), Positives = 191/250 (76%), Gaps = 1/250 (0%)
Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
Y++ ++ + + L ++NL IP+NSVTALIGPSGCGKSTF+R LNRMN+ I
Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124
G I LDG +IY +VDVV LR +VGMVFQ+PNPFPKSI+DNVAYG RIHG +++ I+
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGE-DDEDFIE 120
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
+ VE SLK A+L++EVKD+L A LSGGQQQR+CIAR +AV+PEVILMDEPCSALDPI
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
+T +E+LIH+L+E TIVIVTH+MQQA RVS+ + F G ++E TD++F P D+R
Sbjct: 181 STTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKR 240
Query: 245 TQDYIMGRFG 254
T+DYI GRFG
Sbjct: 241 TEDYITGRFG 250
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 326 bits (838), Expect = 3e-90
Identities = 131/246 (53%), Positives = 175/246 (71%), Gaps = 3/246 (1%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+ +SV Y +K+AL ++L N +TALIGPSG GKST LR +NRMN+ TG I+
Sbjct: 9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+G NIY D V LR +GMVFQ+PNPFP SIY+NV YG R+ G+ +K +D+ VE
Sbjct: 69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGI-KDKQVLDEAVEK 127
Query: 130 SLKKASLFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
SLK AS+++EVKDRL HD++L LSGGQQQRVCIAR LA +P++IL+DEP SALDPI+
Sbjct: 128 SLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248
+EE + L++ T+++VT SMQQA+R+S R F G L+E +DT +MF P + T+DY
Sbjct: 187 IEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246
Query: 249 IMGRFG 254
I G+FG
Sbjct: 247 ISGKFG 252
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 325 bits (834), Expect = 7e-90
Identities = 153/249 (61%), Positives = 189/249 (75%), Gaps = 1/249 (0%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
K+ + V+ YG+ AL I+++I + SV A IGPSGCGKSTFLR NRMN+ I
Sbjct: 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE 62
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125
GEI +DG+NIY V V LR VGMVFQRPNPFPKSI++NVAYG R++G+ +N A I Q
Sbjct: 63 GEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN-AFIRQ 121
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
VE +LK A+L++EVKD+L A LSGGQQQR+CIARA+AV+P V+LMDEP SALDPI+
Sbjct: 122 RVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245
TA VEELIHEL++ TIVIVTH+MQQAARVS + A F+MG +VE DDT K+FT P + T
Sbjct: 182 TAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEAT 241
Query: 246 QDYIMGRFG 254
Q+YI GRFG
Sbjct: 242 QNYITGRFG 250
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 321 bits (825), Expect = 8e-89
Identities = 142/247 (57%), Positives = 187/247 (75%), Gaps = 1/247 (0%)
Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66
+++ S+ YGE A+ +N I VTA+IGPSGCGKSTFLR +NRMN+ I +C TG
Sbjct: 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99
Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126
++ DG++IY D V LR ++GMVFQ+PNPFPKSI+DN+AYGPR+HG+ N+K +++I
Sbjct: 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGI-NDKKQLEEI 158
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
VE SL+KA+L++EV DRL +A LSGGQQQR+C+AR LAV PE++L+DEP SALDP AT
Sbjct: 159 VEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 187 ASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
A +E+LI ELR S TI+IVTH+MQQA+RVS F+ G LVE T ++FT P D+ T+
Sbjct: 219 AKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
Query: 247 DYIMGRF 253
DYI GRF
Sbjct: 279 DYITGRF 285
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 309 bits (792), Expect = 5e-85
Identities = 146/255 (57%), Positives = 193/255 (75%), Gaps = 4/255 (1%)
Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60
MN K+ +++V +G+ A+ D+++ P+NSVTA+IGPSGCGKST LR +NRM++ +
Sbjct: 1 MNNKVKL--EQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVP 58
Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNN 119
+ TG+I+LD +IY VD V +R RVGMVFQ+PNPFP SIYDNV G +++G N
Sbjct: 59 SARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR-VN 117
Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179
+++ D+IVE SLK+ +L++EVKDRL +A LSGGQQQR+CIAR +AV PEVILMDEP S
Sbjct: 118 RSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177
Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
ALDPI+T +EELI EL+E TI+IVTH+MQQAARVS A F+MG LVE +T K+FT
Sbjct: 178 ALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237
Query: 240 PSDQRTQDYIMGRFG 254
P ++T+DYI GRFG
Sbjct: 238 PEKKQTEDYITGRFG 252
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 308 bits (791), Expect = 7e-85
Identities = 143/243 (58%), Positives = 187/243 (76%), Gaps = 1/243 (0%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+S+ YGEKRA+ DI++ I +++VTALIGPSGCGKSTFLR +NRMN+ I + GEI+ +
Sbjct: 27 LSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
G NI S+++VV LR +GMVFQ+PNPFPKSIY+N+ + + G K+ +D+IVE SL
Sbjct: 87 GLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-ERRKSVLDEIVEESL 145
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
KA+L++EVKDRL A LSGGQQQR+CIAR LA+ P V+L+DEP SALDPI+ A +EE
Sbjct: 146 TKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE 205
Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251
LI EL+E +I+IVTH+MQQA RVS R A F G LVE D T+++FT+P Q+T+DYI G
Sbjct: 206 LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYING 265
Query: 252 RFG 254
RFG
Sbjct: 266 RFG 268
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 308 bits (790), Expect = 9e-85
Identities = 141/250 (56%), Positives = 186/250 (74%), Gaps = 2/250 (0%)
Query: 6 KMISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
K+I++ V + YG+ AL I+L QN +TALIGPSGCGKST+LR LNRMN+ I
Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124
TG + L G+NIY + DVV+LR +VGMVFQ+PNPFP SIY+NV YG R+ G+ +KA +D
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGV-KDKAVLD 122
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
+ VE SLK+A++++EVKD L A LSGGQQQRVCIAR LAV P+VIL+DEP SALDPI
Sbjct: 123 EAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
++ +E ++ ELR+ TI++VTHSM QA+R+S + A F G+L+E DT +MF P ++
Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242
Query: 245 TQDYIMGRFG 254
T+DYI GRFG
Sbjct: 243 TEDYITGRFG 252
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 301 bits (771), Expect = 1e-82
Identities = 141/246 (57%), Positives = 189/246 (76%), Gaps = 1/246 (0%)
Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+ +++ Y + +AL +IN+KI +NS+TALIGPSGCGKSTFLR LNRMN+ ++ G +
Sbjct: 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
I +GKNIY ++ D++ LR ++GMVFQ PNPF SIYDN++YGP+IHG +K +D+IVE
Sbjct: 70 IYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT-KDKKKLDEIVE 128
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
SLKK++L+NEVKD+L +A LSGGQQQR+CIAR LA+ P VILMDEP SALDPI+T
Sbjct: 129 QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248
+EELI L+ES TI+IVTH+MQQA R+S R A F G + EE TD++F P + +T++Y
Sbjct: 189 IEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEY 248
Query: 249 IMGRFG 254
I G+FG
Sbjct: 249 ISGKFG 254
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 296 bits (758), Expect = 4e-81
Identities = 141/253 (55%), Positives = 185/253 (73%), Gaps = 3/253 (1%)
Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
K NK++ YG +AL +IN+ + + VTALIGPSGCGKSTFLRC NRM++
Sbjct: 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73
Query: 64 FTGEIIL--DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKA 121
+ GEIIL D NI VD + +R R+ MVFQ+PNPFPKSI++NVAYG RI G+ ++
Sbjct: 74 YEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGV-KRRS 132
Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
+++ VE +L+ A+L++EVKDRL A LSGGQQQR+CIARALA +PE++L DEP SAL
Sbjct: 133 ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192
Query: 182 DPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
DPIATAS+EELI +L+ +TI+IVTH+MQQAARVS A +MG L+E TD +F P
Sbjct: 193 DPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPK 252
Query: 242 DQRTQDYIMGRFG 254
+++T+DYI GRFG
Sbjct: 253 NKQTEDYITGRFG 265
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 291 bits (746), Expect = 1e-79
Identities = 136/243 (55%), Positives = 180/243 (74%), Gaps = 1/243 (0%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
V+ Y + + L +IN+ P+ +TA+IGPSGCGKST LR LNRMN+ + G ++LD
Sbjct: 10 VNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
+NIY ++DVV LR RVGMVFQ+PNPFPKSI+DNVA+GPR+ G ++ +D++VE SL
Sbjct: 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGT-TAQSRLDEVVEKSL 128
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
++A+L++EVKD L LSGGQQQR+CIAR LA+ PEVILMDEPCSALDP++T +EE
Sbjct: 129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188
Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251
L+ EL+++ TI IVTH+MQQAAR S G LVE T ++F+ P D+RT+DYI G
Sbjct: 189 LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYITG 248
Query: 252 RFG 254
RFG
Sbjct: 249 RFG 251
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 291 bits (746), Expect = 1e-79
Identities = 134/252 (53%), Positives = 179/252 (71%), Gaps = 12/252 (4%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
V V YG AL D++LKIP + A IGPSGCGKST LRC NRMN+ I G ++
Sbjct: 26 VKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
+NIY S ++ V+LR +VGMVFQRPNPFPKSIY+N+A+ PR +G K ++D++VE SL
Sbjct: 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY---KGNLDELVEDSL 142
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
++A+++ EVKD+L + LSGGQQQR+CIARA+A+ P+V+LMDEPCSALDPI+T VEE
Sbjct: 143 RRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202
Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHM---------GHLVEEDDTDKMFTAPSD 242
L EL+E TI++VTH+MQQA+RV+ A F+ G LVE T++MF +P
Sbjct: 203 LCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262
Query: 243 QRTQDYIMGRFG 254
+ ++YI GRFG
Sbjct: 263 KEAREYISGRFG 274
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 290 bits (742), Expect = 4e-79
Identities = 139/249 (55%), Positives = 180/249 (72%), Gaps = 2/249 (0%)
Query: 7 MISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
+IS K V + YG AL I+L + +TALIGPSGCGKSTFLRCLNRMN+ I+N T
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125
GEI +G+NIY S +D+V LR VGMVFQ+P PFP S+YDNVAYG +I G+ +K IDQ
Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGV-KDKELIDQ 122
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
VE SLK+A+++ E KD L +A SGGQQQR+CIARALAV P+V+L+DEP SALDPI+
Sbjct: 123 RVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245
++ +EE + EL+ T ++VTH++QQA R+S + A G L+E T++MF AP Q T
Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQIT 242
Query: 246 QDYIMGRFG 254
DY+ GRFG
Sbjct: 243 SDYLNGRFG 251
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 288 bits (738), Expect = 1e-78
Identities = 131/249 (52%), Positives = 186/249 (74%), Gaps = 2/249 (0%)
Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66
+ + V++ YG+K+A+ ++NL + + +V ALIGPSGCGK+TFLR +NRM++ TG
Sbjct: 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64
Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQ 125
I+LDG++IY VD V +R RVGMVFQ+PNPFP S++DNV G ++ G+ ++ + +
Sbjct: 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI-RDRDHLME 123
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
+ E SL+ A+L++EVKDRL A+ LSGGQQQR+CIARALAV PE++LMDEP SALDP +
Sbjct: 124 VAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183
Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245
TA +E+L+ +L++ TI+IVTH+M QAARVS + F +G LVE TD++FT P D+RT
Sbjct: 184 TARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERT 243
Query: 246 QDYIMGRFG 254
+ Y+ GRFG
Sbjct: 244 EAYVSGRFG 252
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 288 bits (737), Expect = 1e-78
Identities = 142/260 (54%), Positives = 181/260 (69%), Gaps = 7/260 (2%)
Query: 1 MNQIYKMISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETI 59
Q+ I K +S Y +A+ I++ I +N VTA+IGPSGCGKSTF++ LNR++E
Sbjct: 1 NQQLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 60 DNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNN 119
G + G+NIY +++ RLR ++GMVFQRPNPFP SIY+NVAYG RI
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA-KLP 119
Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179
+AD+D+IVE +LK A+L+ EVKD+L A LSGGQQQR+CIARALA+ P+V+LMDEPCS
Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMF-----HMGHLVEEDDTD 234
ALDPIAT VEELIH LR LTI IVTH+MQQA RVS A F +G +VE T
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTT 239
Query: 235 KMFTAPSDQRTQDYIMGRFG 254
++F+ P D RT+DY+ GRFG
Sbjct: 240 QIFSNPLDSRTRDYVSGRFG 259
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 284 bits (728), Expect = 2e-77
Identities = 130/242 (53%), Positives = 176/242 (72%), Gaps = 1/242 (0%)
Query: 13 SVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG 72
S YGEK+A+ ++ +KI +N +TA+IGPSGCGK+T LR +NRMN+ I G+I G
Sbjct: 10 SAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69
Query: 73 KNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLK 132
++IY +DV R +VGMVFQ+P PFP SIYDNVA+GPRIHG+ +K +D+IVE SLK
Sbjct: 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGV-KSKHKLDRIVEESLK 128
Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEEL 192
KA+L++EVK L + LSGGQQQR+CIARALAV PEVIL+DEP SALDPIAT +E+L
Sbjct: 129 KAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 193 IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252
+ EL E+ TIVIVTH++ QA R++ A + G L+E T ++ P ++ T++Y+ G+
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEYLTGK 248
Query: 253 FG 254
G
Sbjct: 249 IG 250
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 280 bits (717), Expect = 3e-76
Identities = 125/242 (51%), Positives = 168/242 (69%), Gaps = 1/242 (0%)
Query: 14 VCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK 73
V YG + ++LKIPQN V AL+GPSGCGKST LR NR+ E + GE+ L G+
Sbjct: 12 VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71
Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLK 132
NIY VD + +R VGMVFQ PNPFP +IYDNVA G +++GL +K ++D+ VE +LK
Sbjct: 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131
Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEEL 192
KA+L++EVKDRL S LSGGQ+QR+ IARALA+ P+++LMDEP + +DP+ TA +EEL
Sbjct: 132 KAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
Query: 193 IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252
+ EL++ TIV+VTHS QAARVS A ++G L+E T K+F P + T+ Y+ G
Sbjct: 192 LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVTGA 251
Query: 253 FG 254
G
Sbjct: 252 LG 253
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 274 bits (703), Expect = 1e-74
Identities = 125/246 (50%), Positives = 180/246 (73%), Gaps = 4/246 (1%)
Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+ +++ YG+K+ALFDIN++I QN +TALIG SGCGKSTFLRC NRMN+ I G +
Sbjct: 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLV 62
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
++GK++ + DVV LR VGMVFQ+PN F KSIY+N++Y P++HG+ NK + + +V
Sbjct: 63 EIEGKDV--KNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVV 120
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
L+K LF EVKD+L +A LSGGQQQR+CIARALA+ P+++L+DEP SALDPI++
Sbjct: 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180
Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248
+EEL+ EL +L++++VTH+MQQ RV+ A FH+G L+E ++ + F P ++T+ Y
Sbjct: 181 IEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAY 240
Query: 249 IMGRFG 254
+ G FG
Sbjct: 241 LSGAFG 246
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 265 bits (677), Expect = 1e-71
Identities = 129/236 (54%), Positives = 169/236 (71%), Gaps = 1/236 (0%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
K L D+NL I +N VTA IGPSGCGKSTFLR LN++N+ I+ GEI G N
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
+ + LR R+GMVFQ+P PF SI+DNVAYGPR +G+ N++ +++IVE SLK A+L++
Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGI-NDRKILEKIVEKSLKSAALWD 213
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
EVKD L + LSGGQQQR+CIARA+A+ PEV+LMDEP SALDPIATA +EELI EL++
Sbjct: 214 EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK 273
Query: 199 SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
+I+IVTHSM QA R+S F+ G + E +T +F P ++RT+DYI G+ G
Sbjct: 274 KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYISGKIG 329
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 259 bits (663), Expect = 5e-70
Identities = 126/252 (50%), Positives = 169/252 (67%), Gaps = 8/252 (3%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
N +S Y ++ L ++++I Q+ VTA+IGPSGCGKSTFL+CLNRMNE G +
Sbjct: 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE 70
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+NIY+ V++ RLR +V MV +PN FP S+YDNVAYG +I G K +ID IVE
Sbjct: 71 FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW-RPKLEIDDIVES 129
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
+LK A L++E+K ++ A LSGGQQQR+CIARALAV P+V+LMDEPC LDPIA+ V
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 190 EELIH--ELRESLTIVIVTHSMQQAARVSQRAAMFH-----MGHLVEEDDTDKMFTAPSD 242
E LI LR LT+VIV+H++ Q +R+S A F +G LVE T K+F +P D
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHD 249
Query: 243 QRTQDYIMGRFG 254
RT++Y++ R G
Sbjct: 250 SRTREYVLSRLG 261
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 254 bits (649), Expect = 2e-68
Identities = 120/248 (48%), Positives = 167/248 (67%), Gaps = 3/248 (1%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
K+ + V +G+ L +NL+IP N++TAL+GPSG GKST LR NR+ E +
Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADID 124
GE+ LDG++I++ +DV+ LR RV MVFQ PNP P SI++NVA G +++ L +K ++
Sbjct: 63 GEVYLDGQDIFK--MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
+ V +L+KA L++EVKDRL A LSGGQQQR+CIARALA PEV+L DEP + LDP
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPE 180
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
TA +E L EL++ +TIV+VTH QQAAR+S A + G +VE T ++FT P +
Sbjct: 181 NTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHEL 240
Query: 245 TQDYIMGR 252
T+ Y+ GR
Sbjct: 241 TEKYVTGR 248
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 253 bits (648), Expect = 2e-68
Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 11/246 (4%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YG A+ D ++ I +N +T IGPSGCGKST LR LNRMN+ + F G + G+++
Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
Y VD V +R +GMVFQ+PNPF SI+DNVA+G R L K D+ V+ +L+ A+
Sbjct: 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR---LNRYKGDLGDRVKHALQGAA 134
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
L++EVKD+L LSGGQQQR+CIARA+A PEV+L+DEPCSALDPIAT VEEL+ E
Sbjct: 135 LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHM--------GHLVEEDDTDKMFTAPSDQRTQD 247
L++ TI +VTH+MQQA RV+ A F + G+LVE T ++F P +Q T D
Sbjct: 195 LKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSD 254
Query: 248 YIMGRF 253
YI G+F
Sbjct: 255 YISGKF 260
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 231 bits (591), Expect = 9e-62
Identities = 115/248 (46%), Positives = 164/248 (66%), Gaps = 2/248 (0%)
Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66
M + +++ + K L +++ P +VT+L+GP+G GK+TFLR LNRMN+ + ++G
Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81
Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126
+++L G++I+ DV+ R RVGM+FQRPNPFP SI DNV G R H L K + +
Sbjct: 82 DVLLGGRSIFNYR-DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRK-EFRGV 139
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
+ L + L++ VKDRL LSGGQQQ +C+AR LAVNPEV+L+DEP SALDP T
Sbjct: 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 187 ASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
+EE I L + LT++IVTH++ QAAR+S RAA+F G LVEE T+++F++P T
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETA 259
Query: 247 DYIMGRFG 254
Y+ G G
Sbjct: 260 RYVAGLSG 267
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 230 bits (588), Expect = 2e-61
Identities = 116/237 (48%), Positives = 167/237 (70%), Gaps = 5/237 (2%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV-FTGEIILDGKNIY 76
+K L DI +KIP NS+ ++GPSG GKST L+ LNR+ E D+ + G+++ GK+I+
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 77 QSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
Q +D ++LR VGMVFQ+PNPFP SIYDN+AY + HG+ K +I +IVE L+K
Sbjct: 82 Q--IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI-KEKREIKKIVEECLRKVG 138
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
L+ EV DRL AS LSGGQQQR+ IARALA+ P+V+LMDEP S +D + + ++E+LI E
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252
L+ + IVIV+H+ QQ ARV+ A + G LVE ++++FT+P ++ T+ Y++GR
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYVIGR 255
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 190 bits (484), Expect = 4e-49
Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 26/248 (10%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
VS +G + L +I+L I Q V +IGPSG GKST LRC+N++ E I + G++I+
Sbjct: 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-EEITS----GDLIV 60
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
DG + VD +R GMVFQ+ FP + +NV +GP + G +K + ++
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQARE 119
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L K L +R H S LSGGQQQRV IARALAV P+++L DEP SALDP
Sbjct: 120 LLAKVGL----AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP------ 169
Query: 190 EELIHEL--------RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
EL HE+ E +T+VIVTH + A +V+ R G + E+ D + P
Sbjct: 170 -ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228
Query: 242 DQRTQDYI 249
QR Q+++
Sbjct: 229 SQRLQEFL 236
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 188 bits (478), Expect = 2e-48
Identities = 95/236 (40%), Positives = 145/236 (61%), Gaps = 18/236 (7%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
K L DI++K ++ ++GPSG GKST ++ +NR+ + + G I++DG +I
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE-----GSILIDGVDI--K 68
Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
++DV+ LR ++GMVFQ+P+ F ++ DN+ YGP + G + ++D VE L L
Sbjct: 69 TIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG----EKNVD--VEYYLSIVGL-- 120
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196
K+ D LSGG+ QRV IAR LA NPEV+L+DEP SALDP +T +EELI +L
Sbjct: 121 -NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179
Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252
+ +LT++ +TH+M+QA R+ A + G LVE T FT P ++ T+ +I G+
Sbjct: 180 KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGK 235
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 170 bits (434), Expect = 3e-43
Identities = 89/256 (34%), Positives = 142/256 (55%), Gaps = 28/256 (10%)
Query: 2 NQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNE-TID 60
++++ + AL +++L IP + +IG SG GKST +RC+N + T
Sbjct: 8 SKVFPQGGRTIH-------ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-- 58
Query: 61 NCVFTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGN 118
+G +++DG+++ S ++ + R ++GM+FQ N ++++DNVA + G
Sbjct: 59 ----SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-- 112
Query: 119 NKADIDQIVEMSLKKASLFNEVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDE 176
KA+I V L+ L D+ D + LSGGQ+QRV IARALA NP+V+L DE
Sbjct: 113 PKAEIKARVTELLELVGL----SDK--ADRYPAQLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 177 PCSALDPIATASVEELIHEL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234
SALDP T S+ EL+ ++ RE LTIV++TH M R+ R A+ G LVE+
Sbjct: 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226
Query: 235 KMFTAPSDQRTQDYIM 250
++F+ P T+++I
Sbjct: 227 EVFSHPKHPLTREFIQ 242
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 159 bits (403), Expect = 9e-40
Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 8/234 (3%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG-KNIYQ 77
+ L I+L++ V A+IGPSG GK+T LRC+N + + + G+I +D +++ Q
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 78 SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136
+ +LR VG VFQ N FP +++ +N+ GP I G K + L K L
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPKEEATARARELLAKVGL 134
Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
K+ + LSGGQQQRV IARALA+ PEVIL DEP SALDP V I +L
Sbjct: 135 --AGKETSY--PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 197 -RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
+E T+VIVTH M A V+ RA G +VE+ +F P RT+ ++
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL 244
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 153 bits (389), Expect = 3e-38
Identities = 94/242 (38%), Positives = 135/242 (55%), Gaps = 21/242 (8%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YG +ALFDI L PQ L+GPSG GKS+ LR LN + E + G + + G +
Sbjct: 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-EMPRS----GTLNIAGNHF 66
Query: 76 YQSSV----DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGP-RIHGLGNNKADIDQIVEM 129
S + LR VGMVFQ+ N +P ++ N+ P R+ GL ++A + + ++
Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA-LARAEKL 125
Query: 130 SLKKASLFNEVKDRL-FHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
L++ L DR H LSGGQQQRV IARAL + P+V+L DEP +ALDP TA
Sbjct: 126 -LERLRL-KPYADRFPLH----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 189 VEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQD 247
+ +I EL E+ +T VIVTH ++ A + + R GH+VE+ D FT P + ++
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTQPQTEAFKN 238
Query: 248 YI 249
Y+
Sbjct: 239 YL 240
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 149 bits (377), Expect = 8e-37
Identities = 83/240 (34%), Positives = 135/240 (56%), Gaps = 16/240 (6%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
G K+ + D +L I + + ++G SG GKST +R LNR+ E G+I +DG+NI
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-----AGQIFIDGENIM 58
Query: 77 QSSVDVVR--LRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
+ S +R R ++GMVFQ+ FP +I N + GP + LG + + + LK
Sbjct: 59 KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPEL--LGWPEQERKEKALELLKL 116
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
L E + R + LSGG QQRV +ARALA P+++LMDE SALDP+ S+++ +
Sbjct: 117 VGL-EEYEHRYPDE---LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 194 HELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251
+L+ +L TIV +TH + +A R+ R + G +V+ D++ P+++ +++I
Sbjct: 173 KKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 146 bits (369), Expect = 7e-36
Identities = 91/250 (36%), Positives = 131/250 (52%), Gaps = 28/250 (11%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
+G L +N + ALIGPSG GKST LR L + E ID G+I ++G+ +
Sbjct: 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDE----GQIQVEGEQL 64
Query: 76 YQ-----------SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADI 123
Y + ++R ++GMVFQ N FP K++ DNV P + LG +A
Sbjct: 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAP-VLVLGMARA-- 121
Query: 124 DQIVEMSLKKASLFNEV--KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
E + L + V D+ H + LSGGQQQRV IARALA+ P+V+L DE SAL
Sbjct: 122 ----EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177
Query: 182 DPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
DP V +I L LT+++VTH M A + R F G +VE+ D++F
Sbjct: 178 DPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
Query: 240 PSDQRTQDYI 249
P ++RT++++
Sbjct: 238 PKEERTREFL 247
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 144 bits (364), Expect = 2e-35
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 19/239 (7%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SS 79
AL +++L +P + +IG SG GKST +RC+N + +G +I+DG+++ S+
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-----SGSVIVDGQDLTTLSN 74
Query: 80 VDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
++ + R ++GM+FQ N ++++ NVA + K +I + V L L +
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN--TPKDEIKRKVTELLALVGLGD 132
Query: 139 EVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
+ HD+ S LSGGQ+QRV IARALA NP+V+L DE SALDP T S+ EL+ E+
Sbjct: 133 K------HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 197 --RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRF 253
R LTI+++TH M R+ A+ G L+E+ ++F+ P Q +I
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTL 245
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 140 bits (355), Expect = 2e-34
Identities = 94/263 (35%), Positives = 134/263 (50%), Gaps = 27/263 (10%)
Query: 7 MISNKVSVC-----YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDN 61
M NK++V YGE L ++L+ V ++IG SG GKSTFLRC+N + + +
Sbjct: 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE- 59
Query: 62 CVFTGEIILDGKNIY-------QSSV----DVVRLRARVGMVFQRPNPFPK-SIYDNVAY 109
G I+++G+ I Q V + LR R+ MVFQ N + ++ +NV
Sbjct: 60 ----GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 115
Query: 110 GPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNP 169
P I LG +K + + L K + + + LSGGQQQRV IARALA+ P
Sbjct: 116 AP-IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEP 171
Query: 170 EVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
EV+L DEP SALDP V ++ +L E T+V+VTH M A VS H G +
Sbjct: 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
Query: 229 EEDDTDKMFTAPSDQRTQDYIMG 251
EE +++F P R Q ++ G
Sbjct: 232 EEGAPEQLFGNPQSPRLQQFLKG 254
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 138 bits (350), Expect = 1e-33
Identities = 71/216 (32%), Positives = 128/216 (59%), Gaps = 15/216 (6%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
EK+AL ++N++I LIG +G GKST ++ LN + + +G+II+DG +I
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-----SGKIIIDGVDITD 73
Query: 78 SSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
V + +R +VG+VFQ P F ++I ++A+GP LG ++ +I+ V+ ++
Sbjct: 74 KKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI--NLGLSEEEIENRVKRAMNIVG 131
Query: 136 L-FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
L + + KD+ + LSGGQ++RV IA +A+ P+++++DEP + LDP + I
Sbjct: 132 LDYEDYKDKSPFE---LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 195 ELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
EL + ++TI++V+HSM+ A+++ R + + G
Sbjct: 189 ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 138 bits (349), Expect = 1e-33
Identities = 65/194 (33%), Positives = 108/194 (55%), Gaps = 14/194 (7%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
G L +N + V AL+G +G GKST L LN + +G +++DG+ +
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLD 57
Query: 77 QSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
S ++ R RVG+VFQ P+ F + +VA+GP LG ++A++++ V +L
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL--NLGLSEAEVERRVREALTAV 115
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
+ +++R H LSGG+++RV IA A+A+ P+V+L+DEP + LDP + ++
Sbjct: 116 GA-SGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 195 ELRES-LTIVIVTH 207
LR +T+VI TH
Sbjct: 172 RLRAEGMTVVISTH 185
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 136 bits (344), Expect = 5e-33
Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 32/242 (13%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+S +G +AL D+NL++P S+ AL+GPSG GKST LR + + + +G I
Sbjct: 4 ANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-----SGRIR 58
Query: 70 LDGKNIYQSSVDVVRLRAR---VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQ 125
L+G+ D R+ AR +G VFQ F ++ DN+A+G I + KA I
Sbjct: 59 LNGQ-------DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI--RKHPKAKIKA 109
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
VE L+ L + DR + LSGGQ+QRV +ARALAV P+V+L+DEP ALD
Sbjct: 110 RVEELLELVQL-EGLGDRY---PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD--- 162
Query: 186 TASV-EELIHELRE-----SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
A V +EL LR+ +T V VTH ++A V+ R + G + + D+++
Sbjct: 163 -AKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
Query: 240 PS 241
P+
Sbjct: 222 PA 223
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 133 bits (337), Expect = 4e-32
Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 20/230 (8%)
Query: 10 NKVSVCYGE-KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+S Y K+AL +INL I A+IGPSG GKST LRC+NR+ E +G I
Sbjct: 5 ENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-----SGSI 59
Query: 69 ILDGKNIYQSSVDVVR-LRARVGMVFQRPNPFP-KSIYDNV-----AYGPRIHGLGNNKA 121
+L+G +I + +R LR R+GM+FQ N ++ +NV Y P L +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 122 DIDQIVEMS-LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180
+ D+ +S L++ L D+ + A LSGGQQQRV IARALA P++IL DEP ++
Sbjct: 120 EEDKERALSALERVGL----ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 181 LDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
LDP + V + + + + +T++I H + A + + R G +V
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 132 bits (335), Expect = 8e-32
Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 19/242 (7%)
Query: 11 KVSVCYG-----EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
KV Y E+RAL+D+N+ IP S A+IG +G GKST L+ LN + + V
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 66 GE-IILDGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKAD 122
GE +I GK + + LR +VG+VFQ P F +++ ++ +GP G ++ D
Sbjct: 67 GERVITAGKK----NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPM--NFGVSEED 120
Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
Q ++ L E+ R + LSGGQ +RV IA LA+ PEV+++DEP + LD
Sbjct: 121 AKQKAREMIELVGLPEELLARSPFE---LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 183 PIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
P + E+ ++L + LT V+VTHSM+ AAR + + + H G + + ++F P
Sbjct: 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
Query: 241 SD 242
+
Sbjct: 238 DE 239
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 131 bits (331), Expect = 2e-31
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 23/245 (9%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+ V YG L D++L+I + ALIG SGCGK+T LR + + TG I +
Sbjct: 11 LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF---VKAAGLTGRIAIA 67
Query: 72 GKNIYQSSVDVVRL---RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIV 127
+ D+ + + ++FQ FP + DNVA+G R + KADI + V
Sbjct: 68 DR-------DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM--PKADIAERV 118
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+LK L D H + LSGG QQR+ IARA+A+ P+V+L+DEP SALD A
Sbjct: 119 ADALKLVGL----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174
Query: 188 SV-EEL--IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
++ EE+ +HE LTI+ VTH A ++ +A + G L + ++ AP+D
Sbjct: 175 NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234
Query: 245 TQDYI 249
+++
Sbjct: 235 AAEFL 239
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 129 bits (327), Expect = 6e-31
Identities = 73/216 (33%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
E RALFD+NL I S TA IG +G GKST ++ LN ++ G + +D I
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-----QGSVRVDDTLITS 73
Query: 78 SSV--DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
+S D+ ++R +VG+VFQ P F +++ +VA+GP+ G+ +A + + L
Sbjct: 74 TSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA--EALAREKLAL 131
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
+ + ++ + LSGGQ +RV IA LA+ P+++++DEP + LDP + L
Sbjct: 132 VGISESLFEKNPFE---LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 194 HELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
+L +S +TIV+VTH M A + + G LV
Sbjct: 189 KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 129 bits (325), Expect = 1e-30
Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 33/219 (15%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
+G AL DI+L + + L+GPSGCGK+T LR + G I
Sbjct: 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRII------------AGLERQTAGTI 61
Query: 76 YQSSVDVVRL--RAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
YQ D+ RL + R G+VFQ FP ++ DN+AYG + G +A++ + V L
Sbjct: 62 YQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELL 119
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV-E 190
L + + LSGGQQQRV +ARALA +P ++L+DEP SALD A V E
Sbjct: 120 DLVGLPG-SERKY---PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD----ARVRE 171
Query: 191 ELIHELRE-----SLTIVIVTHSMQQAARVSQR-AAMFH 223
L E+R+ +T ++VTH ++A ++ R M H
Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 128 bits (323), Expect = 1e-30
Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 18/229 (7%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
+G + ++NL I Q ++ L+GPSGCGK+T LR + + + + G+I +DG+++
Sbjct: 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE-----GQIFIDGEDV 70
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
S+ + + MVFQ FP S+ +NV YG ++ LG K + Q V+ +L+
Sbjct: 71 THRSIQ----QRDICMVFQSYALFPHMSLGENVGYGLKM--LGVPKEERKQRVKEALELV 124
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
L +DR + D +SGGQQQRV +ARAL + P+V+L DEP S LD S+ E I
Sbjct: 125 DL-AGFEDR-YVDQ--ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 195 ELRESLTI--VIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
EL++ I + VTH +A VS + + G +++ +++ P+
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 128 bits (323), Expect = 2e-30
Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 15/238 (6%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
+ + ++V YG KR L D++L +P +TALIGP+GCGKST L+C R+ +
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----QS 56
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQR-PNPFPKSIYDNVAYG--PRIHGLGNNKAD 122
G + L K I S +L R+ ++ Q P ++ + VAYG P + G A+
Sbjct: 57 GTVFLGDKPISMLSSR--QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE 114
Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
+ V ++++ + N + DR D LSGGQ+QR +A LA + V+L+DEP + LD
Sbjct: 115 DNARVNQAMEQTRI-NHLADRRLTD---LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Query: 183 PIATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
+ L+ EL + T+V V H + QA+R + GH++ + +++ T
Sbjct: 171 INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 127 bits (322), Expect = 2e-30
Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 14/223 (6%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
AL IN K + + AL+GP+G GKST N + + GE+++ G+ I
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS-----GEVLIKGEPIKYDKK 71
Query: 81 DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
++ +R VG+VFQ P+ F ++ ++VA+GP LG +K ++++ V+ +LK +
Sbjct: 72 SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL--NLGLSKEEVEKRVKEALKAVGMEG 129
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-R 197
H LSGGQ++RV IA LA+ PE+I++DEP S LDP+ + + +L+++L +
Sbjct: 130 FENKPPHH----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185
Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
E +TI+I TH + + + + G +++E ++F+
Sbjct: 186 EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 127 bits (320), Expect = 3e-30
Identities = 72/216 (33%), Positives = 126/216 (58%), Gaps = 16/216 (7%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79
+AL ++L IP+ S TAL+GP+G GKST L LN + G + + G+ + +
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-----LPQRGRVKVMGREVNAEN 73
Query: 80 VDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
VR ++VG+VFQ P+ F +++D+VA+GP GL K ++++ VE +LK ++
Sbjct: 74 EKWVR--SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD--KDEVERRVEEALKAVRMW 129
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196
+ +D+ + LS GQ++RV IA LA++P+VI++DEP + LDP ++ E++ L
Sbjct: 130 -DFRDKPPYH---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH 185
Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232
+ T+++ TH + AA + + + G ++ E D
Sbjct: 186 NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 126 bits (319), Expect = 4e-30
Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 15/221 (6%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
AL IN+ I + VTA++G +G GKST + LN + + +G I+ DGK I S
Sbjct: 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-----SGRILFDGKPIDYSRK 75
Query: 81 DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
+++LR VGMVFQ P+ F S+Y +V++G L + ++ + V+ +LK+ +
Sbjct: 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV--NLKLPEDEVRKRVDNALKRTGI-E 132
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
+KD+ H LS GQ++RV IA L + P+V+++DEP + LDP+ + + +L+ E+++
Sbjct: 133 HLKDKPTH---CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 199 SL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237
L TI+I TH + + G ++ + + ++F
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 126 bits (318), Expect = 7e-30
Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 17/213 (7%)
Query: 11 KVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
VS Y G AL D++L I + L GPSG GK+T L+ L T G++
Sbjct: 6 NVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY-GALTPSR----GQVR 60
Query: 70 LDGKNI--YQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQI 126
+ G+++ + + LR R+G+VFQ P +++Y+NVA + G + +I +
Sbjct: 61 IAGEDVNRLRGR-QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK--EREIQRR 117
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
V +L++ L + + LSGG+QQRV IARA+ +P ++L DEP LDP +
Sbjct: 118 VGAALRQVGL----EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173
Query: 187 ASVEELIHEL-RESLTIVIVTHSMQQAARVSQR 218
+ +L+ L + T+++ TH + RV+ R
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR 206
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 125 bits (315), Expect = 2e-29
Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 19/225 (8%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+S + K + +++L I L+GPSGCGK+T LR + ET D+ G I+LD
Sbjct: 20 ISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDS----GRIMLD 74
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMS 130
G++I + V VFQ FP ++++NVA+G R+ A+I V +
Sbjct: 75 GQDITHVPAE----NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA--AEITPRVMEA 128
Query: 131 LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD-PIATASV 189
L+ L E R H LSGGQQQRV IARA+ P+V+L+DE SALD +
Sbjct: 129 LRMVQL-EEFAQRKPHQ---LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184
Query: 190 EELIHELRE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDT 233
EL R+ +T V VTH ++A +S R + G +E+D T
Sbjct: 185 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR-IEQDGT 228
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 124 bits (314), Expect = 2e-29
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 12 VSVCYGEKR--ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+SV Y +R AL ++ +P AL+GPSG GKST L L + G I
Sbjct: 326 LSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIA 380
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
++G + + D R ++ V Q P F +I +N+ L A +I
Sbjct: 381 VNGVPLADADADS--WRDQIAWVPQHPFLFAGTIAENIR-------LARPDASDAEIRR- 430
Query: 130 SLKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
+L++A L V + + LSGGQ QR+ +ARA + ++L+DEP + LD
Sbjct: 431 ALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
Query: 183 PIATASVEELIHELRESLTIVIVTHSMQQAARV 215
A V E + L + T+++VTH + A R
Sbjct: 491 AETEALVTEALRALAQGRTVLLVTHRLALAERA 523
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 121 bits (306), Expect = 1e-28
Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 18/234 (7%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGEIILDGKNIYQSSVD 81
+ +L I + + L+G SG GKS+ LR +N +N V G+ +D +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSID---VANCDAA 98
Query: 82 VVR-LRA-RVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
+R LR RV MVFQ+ P ++ +NVA+G + G+ +A+ + V+ L+ L
Sbjct: 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMP--EAERRKRVDEQLELVGL-A 155
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIHELR 197
+ D+ + LSGG QQRV +ARA A++ +++LMDEP SALDP I T +EL+ EL+
Sbjct: 156 QWADKKPGE---LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL-ELQ 211
Query: 198 ESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
L TI+ V+H + +A ++ R A+ G +++ +++ P++ D++
Sbjct: 212 AKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 119 bits (300), Expect = 5e-28
Identities = 74/212 (34%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79
RALFDI+L++ + S TALIG +G GKST L+ LN + + + V G+I++ +
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS---KQ 76
Query: 80 VDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
++ +R +VG+VFQ P F +++ +VA+GP+ G+ K ++I L+ L
Sbjct: 77 KEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI--PKEKAEKIAAEKLEMVGLA 134
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197
+E ++ + LSGGQ +RV IA LA+ PEV+++DEP + LDP A + +L +
Sbjct: 135 DEFWEKSPFE---LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 198 ES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
+S T+V+VTH M A + + GH++
Sbjct: 192 QSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 119 bits (300), Expect = 7e-28
Identities = 85/249 (34%), Positives = 119/249 (47%), Gaps = 42/249 (16%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTG 66
+ +G + L DI+L IP + AL+GPSG GK+T LR L G
Sbjct: 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS--------G 57
Query: 67 EIILDGKNIYQSSVDVVRLRAR---VGMVFQRPNPFPK-SIYDNVAYG----PRIHGLGN 118
I G DV RL AR VG VFQ F +++DN+A+G PR
Sbjct: 58 HIRFHGT-------DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP-- 108
Query: 119 NKADIDQIVEMSLKKASLFNEVKDRLFHDA----SLLSGGQQQRVCIARALAVNPEVILM 174
N A I K L V+ L H A + LSGGQ+QRV +ARALAV P+++L+
Sbjct: 109 NAAAIKA------KVTQLLEMVQ--LAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160
Query: 175 DEPCSALDPIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232
DEP ALD + + +L E L T V VTH ++A V+ R + G++ +
Sbjct: 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
Query: 233 TDKMFTAPS 241
D+++ P+
Sbjct: 221 PDQVWREPA 229
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 118 bits (298), Expect = 1e-27
Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 24/219 (10%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96
L+GPSGCGK+T LR L E D +G I+LDG+++ V + MVFQ
Sbjct: 1 LLGPSGCGKTTLLRLLAGF-EQPD----SGSIMLDGEDVTN----VPPHLRHINMVFQSY 51
Query: 97 NPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQ 155
FP ++ +NVA+G ++ + +A+I V +L+ L E DR H LSGGQ
Sbjct: 52 ALFPHMTVEENVAFGLKMRKVP--RAEIKPRVLEALRLVQL-EEFADRKPHQ---LSGGQ 105
Query: 156 QQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE-----SLTIVIVTHSMQ 210
QQRV +ARAL P+++L+DEP SALD +++ EL+ +T V VTH +
Sbjct: 106 QQRVALARALVFKPKILLLDEPLSALD---KKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
+A +S R A+ G + + ++++ P++ +I
Sbjct: 163 EAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 117 bits (295), Expect = 3e-27
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 24/214 (11%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+S +G+K L D+NL I + + A+IG SG GKST L + + E D+ G++ L+
Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDS----GQVYLN 58
Query: 72 GKNI--YQSSVDVVRLRARVGMVFQRPNPFP----KSIYDNVAYGPRIHGLGNNKADIDQ 125
GK S R ++G +FQ F +++ +N+ G + +K + +
Sbjct: 59 GKETPPLNSKKASKFRREKLGYLFQN---FALIENETVEENLDLG--LKYKKLSKKEKRE 113
Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
+ +L+K L ++K +++ LSGG+QQRV +ARA+ +P +IL DEP +LDP
Sbjct: 114 KKKEALEKVGLNLKLKQKIYE----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169
Query: 186 TASVEELIHEL-RESLTIVIVTHSM---QQAARV 215
V +L+ EL E TI+IVTH +QA RV
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 117 bits (294), Expect = 4e-27
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 26/217 (11%)
Query: 6 KMIS-NKVSVCYG--EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62
MI VS Y E AL +++ +I + A++G +G GKST + L + +
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS-- 63
Query: 63 VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNK 120
GEI +DG I + ++ +R ++G++FQ P N F ++ D++A+G L N K
Sbjct: 64 ---GEIKIDGITISKENLK--EIRKKIGIIFQNPDNQFIGATVEDDIAFG-----LENKK 113
Query: 121 AD---IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEP 177
+ I++ KK + +D L + LSGGQ+QRV IA LA+NPE+I+ DE
Sbjct: 114 VPPKKMKDIIDDLAKKVGM----EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169
Query: 178 CSALDPIATASVEELIHELRE--SLTIVIVTHSMQQA 212
S LDP +++++ +LR+ T++ +TH M +A
Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 113 bits (284), Expect = 5e-26
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81
L ++NL I ++GPSG GKST + L R+ T + G++++DG ++ D
Sbjct: 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQH----GQVLVDGVDLAI--AD 525
Query: 82 VVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS-LKKASLFNEV 140
LR ++G+V Q F +SI DN+A L N A + ++ + L A F
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISE 578
Query: 141 KDRLFH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
+ ++ + LSGGQ+QR+ IARAL NP +++ DE SALD + A + + E
Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
+ T++I+ H + R R + G + E
Sbjct: 639 ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAES 672
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 112 bits (282), Expect = 9e-26
Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQSS- 79
D + +P VTA+ G SG GK+T +R L R +E GEI+L+G+ ++ S
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE--------GEIVLNGRTLFDSRK 66
Query: 80 -VDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
+ + + R+G VFQ FP S+ N+ YG + + ++++E+ L L
Sbjct: 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIEL-LGIGHLL 125
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197
RL LSGG++QRV I RAL +P ++LMDEP +ALD + + L
Sbjct: 126 ----GRLPGR---LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH 178
Query: 198 ESLTI--VIVTHSMQQAARVSQR 218
I + V+HS+Q+ R++ R
Sbjct: 179 AEFGIPILYVSHSLQEVLRLADR 201
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 112 bits (282), Expect = 1e-25
Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 18/224 (8%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
AL D++ + + A++G +G GKST + LN + + G ++L + ++
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78
Query: 78 SSVDVVRLRARVGMVFQRP-NPFPKS-IYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
+R +VGMVFQ P N F + + D+VA+G L N +++VE + +A
Sbjct: 79 -------VRRQVGMVFQNPDNQFVGATVQDDVAFG-----LENIGVPREEMVE-RVDQAL 125
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
++D L + LSGGQ+QRV IA LA+ P++I++DE S LDP V E + +
Sbjct: 126 RQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 196 LRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237
L+E +T++ +TH + +AA+ + R + + G ++EE +++F
Sbjct: 186 LKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF 228
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 111 bits (278), Expect = 2e-25
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 15/228 (6%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY- 76
EK+ L +I+ ++ + S AL+G +G GKST ++ N + + +G I + G +I
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-----SGTITIAGYHITP 73
Query: 77 -QSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
+ ++ +LR +V +VFQ P F ++ +V +GP+ G ++A + LKK
Sbjct: 74 ETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL--KWLKK 131
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
L ++ LSGGQ +RV IA +A PE++ +DEP + LDP + +L
Sbjct: 132 VGLSEDLIS---KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
+ + T+++VTH+M A + + G L++ ++F+
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 110 bits (276), Expect = 3e-25
Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 20/251 (7%)
Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
+ I K + G K D +L I + + ++G SG GKST +R LNR+ E
Sbjct: 32 EQILEKTGLSLGVK----DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-----R 82
Query: 66 GEIILDGKNIYQSSVDVVR--LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD 122
G++++DG +I + S +R R ++ MVFQ P ++ DN A+G + G+ +
Sbjct: 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN--AEE 140
Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
+ +L++ L N + D LSGG +QRV +ARALA+NP+++LMDE SALD
Sbjct: 141 RREKALDALRQVGLENYAHS--YPDE--LSGGMRQRVGLARALAINPDILLMDEAFSALD 196
Query: 183 P-IATASVEELIH-ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
P I T +EL+ + + TIV ++H + +A R+ R A+ G +V+ D++ P
Sbjct: 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
Query: 241 SDQRTQDYIMG 251
++ + + G
Sbjct: 257 ANDYVRTFFRG 267
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 110 bits (277), Expect = 4e-25
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 7 MIS-NKVSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
MI +VS Y G + AL ++N I + + L+G SG GKSTFL+ + + +
Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---- 56
Query: 64 FTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKA 121
G+I +G+++ + ++ LR +GMVFQ +++YDNVA+ RI +G
Sbjct: 57 -RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI--IGVPPR 113
Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
D ++ V +L+K L + + LSGG+QQRV IARA+ P ++L DEP L
Sbjct: 114 DANERVSAALEKVGL----EGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNL 169
Query: 182 DPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHL 227
DP + + L E R T+++ TH + R G L
Sbjct: 170 DPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 110 bits (276), Expect = 4e-25
Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 17/201 (8%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSVDVVRLRARVGMVFQ 94
+L+G SG GKST R L R+ E+ GEII +G+ I S + LR + +FQ
Sbjct: 354 SLVGESGSGKSTTGRALLRLVESQG-----GEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 95 RP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150
P +P +++ D++ R+HGL KA ++ + L++ L E R H+
Sbjct: 409 DPYASLDP-RQTVGDSIMEPLRVHGLLPGKAAAARVAWL-LERVGLLPEHAWRYPHE--- 463
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTI--VIVTHS 208
SGGQ+QR+CIARALA+NP+VI+ DE SALD + L+ +L+ I + ++H
Sbjct: 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD 523
Query: 209 MQQAARVSQRAAMFHMGHLVE 229
M R+S R A+ ++G +VE
Sbjct: 524 MAVVERISHRVAVMYLGQIVE 544
Score = 90.7 bits (225), Expect = 3e-19
Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 20/241 (8%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN------ 74
A+ +++ + + A++G SG GKS L R+ E V +++L ++
Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90
Query: 75 IYQSSVDVVRLR-ARVGMVFQRP----NP-FPKSIYDNVAYGPRIH-GLGNNKADIDQIV 127
QS+ + +R A + M+FQ P NP F + + +A R+H G +A ++
Sbjct: 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT--VGEQIAESIRLHQGASREEAMVEAKR 148
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+ + + R H LSGG +QRV IA AL+ P V++ DEP +ALD A
Sbjct: 149 MLDQVRIPEAQTILSRYPHQ---LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205
Query: 188 SVEELIHELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245
+ +LI L++ S+ ++ +TH M A ++ R + + G VE +++F AP T
Sbjct: 206 QILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYT 265
Query: 246 Q 246
+
Sbjct: 266 R 266
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 110 bits (276), Expect = 4e-25
Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 17/229 (7%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
+K AL DI+ IP+ S TALIG +G GKST + +N + DN +I +DG +
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP--NSKITVDGITLTA 76
Query: 78 SSV-DVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
+V D+ R +VG+VFQ P N F ++ D+VA+G + + + +IV L
Sbjct: 77 KTVWDI---REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE--MIKIVRDVLADV 131
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
+ + + + + LSGGQ+QRV IA LAV P++I++DE S LDP + +LI
Sbjct: 132 GMLDYIDS----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 195 ELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
+L++ +LT++ +TH + +A Q + G L+ + ++F+
Sbjct: 188 KLKKKNNLTVISITHDIDEANMADQ-VLVLDDGKLLAQGSPVEIFSKVE 235
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 109 bits (275), Expect = 6e-25
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 16/207 (7%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-S 78
R L ++L I + + A++G SG GKST L L +DN +GE++ +G+++ + S
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG----GLDNPT-SGEVLFNGQSLSKLS 73
Query: 79 SVDVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136
S + +LR + +G ++Q + P + +NVA P + G + + + L+K L
Sbjct: 74 SNERAKLRNKKLGFIYQFHHLLPDFTALENVAM-PLLIG-KKSVKEAKERAYEMLEKVGL 131
Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
+ R+ H S LSGG++QRV IARAL P ++L DEP LD + +L+ EL
Sbjct: 132 ----EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 197 RESLTI--VIVTHSMQQAARVSQRAAM 221
L ++VTH ++ A ++ + M
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEM 214
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 109 bits (274), Expect = 8e-25
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 6 KMI-SNKVSVCY------GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET 58
+MI VS Y EK AL D+NL++ + ++G +G GKST + +N +
Sbjct: 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP 62
Query: 59 IDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP-NPFPKSIYD-NVAYGPRIHGL 116
+ G++ +DG + ++ +R + GMVFQ P N +I + +VA+GP L
Sbjct: 63 SE-----GKVYVDGLDTSDEE-NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE--NL 114
Query: 117 GNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
G +I + V+ SLKK ++ E + H LLSGGQ+QRV IA LA+ PE I+ DE
Sbjct: 115 GIPPEEIRERVDESLKKVGMY-EYRR---HAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 177 PCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAA 213
P + LDP V I EL + +TI+++TH M++A
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV 209
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 109 bits (273), Expect = 9e-25
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 21/239 (8%)
Query: 10 NKVSVCYG-----EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
+ VS Y E +A+ D+N + Q A++G +G GKST ++ +N + +
Sbjct: 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT----- 60
Query: 65 TGEIILDGKNIYQSSVD-VVR-LRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNK 120
TG + +D I + D +R +R R+GMVFQ P F ++ + +GP+ N K
Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK-----NFK 115
Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180
++D++ + + +D + +SGGQ +++ I LA+NP++I++DEP +
Sbjct: 116 MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 181 LDPIATASVEELIHELR--ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237
LDP + V L+ L+ E+ TI++V+H M + AR + + G +V + ++F
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 108 bits (272), Expect = 1e-24
Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 20/234 (8%)
Query: 14 VCY---GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
+CY G K AL +IN P+NS A+IGP+G GKST R N + + +G +++
Sbjct: 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-----SGSVLI 63
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
G+ I + ++ VR VG+VFQ P+ F ++ ++A+GP LG ++ + V
Sbjct: 64 RGEPITKENIREVR--KFVGLVFQNPDDQIFSPTVEQDIAFGPI--NLGLDEETVAHRVS 119
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
+L L E++DR+ H LSGG+++RV IA +A+ P+V+++DEP + LDP
Sbjct: 120 SALHMLGL-EELRDRVPHH---LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 189 VEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
+ + +++L E+ +T++ TH + ++ + G +V +++F P
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 108 bits (272), Expect = 1e-24
Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 25/208 (12%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGE 67
+ + YG K AL DINL + + ++GPSGCGK+T L I V G
Sbjct: 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-------NLIAGFVPYQHGS 57
Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQI 126
I LDGK + A G+VFQ P +++ DNVA+G ++ G+ K +I
Sbjct: 58 ITLDGKPVEGPG-------AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE--KMQRLEI 108
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
LKK L K ++ LSGGQ+QRV IARALA NP+++L+DEP ALD
Sbjct: 109 AHQMLKKVGLEGAEKRYIWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164
Query: 187 ASVEELIHEL--RESLTIVIVTHSMQQA 212
++ L+ +L ++++TH +++A
Sbjct: 165 EQMQTLLLKLWQETGKQVLLITHDIEEA 192
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 108 bits (271), Expect = 2e-24
Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 30/225 (13%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YG+ +A+ +N K+ + V +GP+G GK+T +R L T +
Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRML------------TTLLRPTSGTA 50
Query: 76 YQSSVDVVR----LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD--IDQIVE 128
+ DVVR +R +G+V Q + + +N+ R++GL ++A+ ++++E
Sbjct: 51 RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE 110
Query: 129 M-SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+ L +A DR SGG ++R+ IA +L P+V+ +DEP + LDP
Sbjct: 111 LFELGEA------ADRP---VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161
Query: 188 SVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEED 231
++ + I L+E +TI++ TH M++A ++ R A+ G ++ E
Sbjct: 162 AIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 107 bits (270), Expect = 2e-24
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 37/243 (15%)
Query: 12 VSVCY-GEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
VS Y G++ AL +++L I A+IG G GKST L+ L + + + G ++
Sbjct: 469 VSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE-----GSVL 523
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
LDG +I Q +D LR +G V Q P F ++ DN+A LG AD ++I+
Sbjct: 524 LDGVDIRQ--IDPADLRRNIGYVPQDPRLFYGTLRDNIA-------LGAPYADDEEILR- 573
Query: 130 SLKKASLFNEVKDRLFHDASL----------LSGGQQQRVCIARALAVNPEVILMDEPCS 179
+ + A + V+ H L LSGGQ+Q V +ARAL +P ++L+DEP S
Sbjct: 574 AAELAGVTEFVRR---HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630
Query: 180 ALDPIATASVEELIHELRESL---TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
A+D S E L+ L T+V+VTH V R + G +V + D++
Sbjct: 631 AMD---NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD-RIIVMDNGRIVADGPKDQV 686
Query: 237 FTA 239
A
Sbjct: 687 LEA 689
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 107 bits (269), Expect = 3e-24
Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 24/203 (11%)
Query: 16 YGE----KRALFDINLKIPQNSVTALIGPSGCGKSTFLR---CLNRMNETIDNCVFTGEI 68
YG K+ LFDINL+I + L GPSG GK+T L L + E G +
Sbjct: 11 YGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE--------GSL 62
Query: 69 ILDGKNIYQSS-VDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQI 126
+ G+ +Y +S ++V+LR +G +FQ N + NV + + + ++
Sbjct: 63 KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
M L+ L D L + LSGGQ+QRV IARAL P+++L DEP +ALD +
Sbjct: 123 RAM-LEAVGL----GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177
Query: 187 ASVEELIHEL-RE-SLTIVIVTH 207
V EL+ +L RE TI+IVTH
Sbjct: 178 RDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 106 bits (267), Expect = 4e-24
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
+ L + + V AL+GPSG GKST L + + G+++LDG + Q
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-----GGQVLLDGVPLVQ 547
Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
D L +V +V Q P F S+ +N+AYG ++I M+ KA+
Sbjct: 548 --YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-------DTPDEEI--MAAAKAANA 596
Query: 138 NEVKDRLFHD--------ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
++ + S LSGGQ+QR+ IARAL P V+++DE SALD A
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD----AEC 652
Query: 190 EELIHELRE--SLTIVIVTHSMQQAARVSQ 217
E+L+ E R S T++++ H + R Q
Sbjct: 653 EQLLQESRSRASRTVLLIAHRLSTVERADQ 682
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 106 bits (266), Expect = 6e-24
Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 19/198 (9%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
L D++ IP+ T+++G +G GKST + + + + GEI + + I +
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS-----GEIFYNNQAI--TDD 76
Query: 81 DVVRLRARVGMVFQRP-NPFPKSI--YDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
+ +LR +G+VFQ P N F SI YD VA+G H + ++ + + V +LK+ +
Sbjct: 77 NFEKLRKHIGIVFQNPDNQFVGSIVKYD-VAFGLENHAVPYDE--MHRRVSEALKQVDML 133
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197
+R ++ + LSGGQ+QRV IA LA+NP VI++DE S LDP A ++ +L+ +++
Sbjct: 134 ----ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189
Query: 198 ES--LTIVIVTHSMQQAA 213
+TI+ +TH + +A
Sbjct: 190 SEHNITIISITHDLSEAM 207
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 106 bits (266), Expect = 6e-24
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 29/223 (13%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
++ AL +NL + AL+GPSG GKST + L R + +G I+LDG ++ Q
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-----SGRILLDGVDLRQ 406
Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL- 136
LRAR+ +V Q P F S+ +N+ YG R D+ VE + + A
Sbjct: 407 LDPAE--LRARMALVPQDPVLFAASVMENIRYG-RPDA-------TDEEVEAAARAAHAH 456
Query: 137 -FNEVKDRLFHD-----ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190
F + LSGGQ+QR+ IARA+ + ++L+DE SALD + V+
Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516
Query: 191 ELIHELRESLTIVIVTH---SMQQAARVSQRAAMFHMGHLVEE 230
+ + L + T +I+ H ++ +A R+ + G +V +
Sbjct: 517 QALETLMKGRTTLIIAHRLATVLKADRI----VVMDQGRIVAQ 555
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 106 bits (267), Expect = 7e-24
Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 23/235 (9%)
Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
M+ +SV G + L D++L + V A++GP+G GKST LR L + + +
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-----SGELSPDS 56
Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKADID 124
GE+ L+G+ + + L R ++ Q + FP ++ + VA G R + D D
Sbjct: 57 GEVRLNGRPL--ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMG-RAPHGLSRAED-D 112
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALA------VNPEVILMDEPC 178
+V +L + L + R + LSGG+QQRV +AR LA P +L+DEP
Sbjct: 113 ALVAAALAQVDL-AHLAGRDYPQ---LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 179 SALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEED 231
SALD V L +L L +++V H + AAR + R + H G LV +
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 106 bits (265), Expect = 7e-24
Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
L +++L I + L+G SGCGKST R L + + G + G+++Y
Sbjct: 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA-----QGTVSFRGQDLY 76
Query: 77 Q-SSVDVVRLRARVGMVFQ-RPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
Q R V +VFQ P+ P+ + P H ++++ + L
Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDM 136
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
L +E D+L LSGGQ QR+ IARALAV P++I++DE S LD + A + EL+
Sbjct: 137 VGLRSEDADKL---PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 194 HELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242
+L+++ + +TH ++ QR A+ G +VEE D ++ +
Sbjct: 194 RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 104 bits (261), Expect = 2e-23
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 10 NKVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGE 67
N VS YG L DI+L I NS T ++G SG GKST + L +GE
Sbjct: 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR------SGE 530
Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127
I+L+G ++ +D LR + + Q P F SI +N+ G D+I
Sbjct: 531 ILLNGFSL--KDIDRHTLRQFINYLPQEPYIFSGSILENLLLG------AKENVSQDEI- 581
Query: 128 EMSLKKASLFNEVKD-----------RLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
A E+KD L + S +SGGQ+QR+ +ARAL + +V+++DE
Sbjct: 582 ----WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637
Query: 177 PCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
S LD I + + L++ TI+ V H + A + + + H G ++E+ D++
Sbjct: 638 STSNLDTITEKKIVNNLLNLQDK-TIIFVAHRLSVAKQSDKIIVLDH-GKIIEQGSHDEL 695
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 104 bits (262), Expect = 2e-23
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 27/235 (11%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+ ++V YG+ L ++L++P+ VT ++G +G GK+T L+ L + V +G I
Sbjct: 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIR 58
Query: 70 LDGKNI-----YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADI 123
LDG++I ++ R RA + V Q FP+ ++ +N+ G ++
Sbjct: 59 LDGEDITKLPPHE------RARAGIAYVPQGREIFPRLTVEENLLTGLAALP-RRSRKIP 111
Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
D+I E LF +K+ L LSGGQQQ++ IARAL P+++L+DEP + P
Sbjct: 112 DEIYE-------LFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164
Query: 184 IATASVEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
+ +I LR + I++V + A ++ R + G +V D++
Sbjct: 165 SIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 104 bits (261), Expect = 3e-23
Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 15/244 (6%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
VS G + +I+L +P+ +TA++GPSG GK+T LR + GEI+ D
Sbjct: 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-----HGEILFD 67
Query: 72 GKNIYQ-SSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
G+NI S + +R R+ M+FQ F +++DNVAY R H + V M
Sbjct: 68 GENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH-TQLPAPLLHSTVMM 126
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L+ L K S LSGG +R +ARA+A+ P++I+ DEP DPI +
Sbjct: 127 KLEAVGLRGAAKLM----PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182
Query: 190 EELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQD 247
+LI EL +L T V+V+H + + ++ A + +V + A D R +
Sbjct: 183 VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-QANPDPRVRQ 241
Query: 248 YIMG 251
++ G
Sbjct: 242 FLDG 245
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 103 bits (259), Expect = 4e-23
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81
L +NL I Q +LIG SGCGKST L ++ + + G +IL+GK I + D
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS-----GGVILEGKQITEPGPD 55
Query: 82 VVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEV 140
R+ +VFQ + P ++ +N+A +K++ IVE + L E
Sbjct: 56 --RM-----VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGL-TEA 107
Query: 141 KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES- 199
D+ LSGG +QRV IARAL++ P+V+L+DEP ALD + +++E + ++ E
Sbjct: 108 ADKRPGQ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164
Query: 200 -LTIVIVTHSMQQAARVSQRAAMFHMG 225
+T+++VTH + +A +S R M G
Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNG 191
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 102 bits (256), Expect = 8e-23
Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 22/238 (9%)
Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL---NRMNETIDNC 62
M+S +KVS YG+ +AL +++L I Q + LIG +G GK+T L L R
Sbjct: 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS----- 59
Query: 63 VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKA 121
G I+ DGK+I + +R V +V + F + ++ +N+A +G A
Sbjct: 60 ---GRIVFDGKDITDWQTAKI-MREAVAIVPEGRRVFSRMTVEENLA-------MGGFFA 108
Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
+ DQ E LF + +R A +SGG+QQ + I RAL P ++L+DEP L
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Query: 182 DPIATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238
PI + + I +LR + +TI +V + QA +++ R + GH+V ED D +
Sbjct: 169 APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 102 bits (257), Expect = 8e-23
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGEIILDGKNIYQSSVD 81
D+NL + + V AL+G SG GKS L CL + + + +GEI+LDG+ + S
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKS--LTCLAILG-LLPPGLTQTSGEILLDGRPLLPLS-- 58
Query: 82 VVRLRAR-VGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136
+R R + + Q P NP ++ ++ R G + +A I+E +L+ L
Sbjct: 59 ---IRGRHIATIMQNPRTAFNPL-FTMGNHAIETLRSLGKLSKQAR-ALILE-ALEAVGL 112
Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
+ ++ L LSGG QRV IA AL + P ++ DEP + LD + A V +L+ EL
Sbjct: 113 -PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 197 RE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
R+ I+++TH + AR++ A+ G +VE ++F P + T+
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 102 bits (256), Expect = 9e-23
Identities = 73/208 (35%), Positives = 102/208 (49%), Gaps = 26/208 (12%)
Query: 13 SVC--YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
+V YG+ DINL I + +GPSGCGKST LR + + E I +G++ +
Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-EDIT----SGDLFI 62
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
K + DV VGMVFQ +P S+ +N+++G ++ G K +I+Q V
Sbjct: 63 GEKRMN----DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--KKEEINQRVNQ 116
Query: 130 S---LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
L+ A L DR LSGGQ+QRV I R L P V L+DEP S LD
Sbjct: 117 VAEVLQLAHLL----DRKPKA---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 187 ASVEELIHELRESL--TIVIVTHSMQQA 212
+ I L + L T++ VTH +A
Sbjct: 170 VQMRIEISRLHKRLGRTMIYVTHDQVEA 197
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 102 bits (256), Expect = 9e-23
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
+ L +++L + AL+G SGCGKST R L + E+ G + G+ +
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESPSQ----GNVSWRGEPLA 77
Query: 77 QSSVDVVR-LRARVGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131
+ + + R + MVFQ NP K++ + + P H L +KA+ L
Sbjct: 78 KLNRAQRKAFRRDIQMVFQDSISAVNP-RKTVREIIRE-PLRHLLSLDKAERLARASEML 135
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
+ L + V D+ LSGGQ QRVC+ARALAV P+++++DE S LD + A V
Sbjct: 136 RAVDLDDSVLDKR---PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR 192
Query: 192 LIHELRESLTI--VIVTHSMQQAARVSQRAAMFHMGHLVEE 230
L+ +L++ + +TH ++ R QR + G +VE
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 102 bits (255), Expect = 1e-22
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 41/244 (16%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM-------------NETIDNCVF 64
E +AL +++++I Q A+IG +G GK+TF+ LN + +E
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78
Query: 65 TGEIILDGKNIYQSSVDVVR----LRARVGMVFQ--RPNPFPKSIYDNVAYGPRIHGLGN 118
E +L+ I ++ ++ +R RVG+VFQ F ++I ++ +GP G+
Sbjct: 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK 138
Query: 119 NKA-----DIDQIV---EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170
+A ++V E L++ S F LSGGQ++RV +A LA+ P+
Sbjct: 139 EEAKKRAAKYIELVGLDESYLQR-SPFE------------LSGGQKRRVALAGILAMEPD 185
Query: 171 VILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVE 229
++ DEP + LDP + E+ L + TI++VTH + ++R F G +++
Sbjct: 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK 245
Query: 230 EDDT 233
+ DT
Sbjct: 246 DGDT 249
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 102 bits (255), Expect = 1e-22
Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 18/232 (7%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
A+ D++L I + + AL+G SGCGKST LR L + G+I+LDG ++
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT-----AGQIMLDGVDL----S 84
Query: 81 DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNE 139
V + + M+FQ FP ++ N+A+G + L KA+I V L + E
Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP--KAEIASRVNEMLGLVHM-QE 141
Query: 140 VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE-ELIHEL-R 197
R H LSGGQ+QRV +AR+LA P+++L+DEP ALD ++ E++ L R
Sbjct: 142 FAKRKPHQ---LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198
Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
+T V+VTH ++A ++ R A+ + G V+ + ++++ P+ + + ++I
Sbjct: 199 VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 101 bits (254), Expect = 2e-22
Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 38/233 (16%)
Query: 12 VSVCYGEK--RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
V+ Y L D++L+I A++GPSG GKST LR L ET + +G +
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ETPE----SGSVF 511
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
DG+++ + +DV +R ++G+V Q SI++N+A G +D+ E
Sbjct: 512 YDGQDL--AGLDVQAVRRQLGVVLQNGRLMSGSIFENIA--------GGAPLTLDEAWE- 560
Query: 130 SLKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
+ + A L +++ + LSGGQ+QR+ IARAL P ++L DE SALD
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 183 PIATASVEELIHELRESLTIVIVTHSMQQAARVS-----QRAAMFHMGHLVEE 230
A V E + L+ + IVI A R+S R + G +V++
Sbjct: 621 NRTQAIVSESLERLKVT-RIVI-------AHRLSTIRNADRIYVLDAGRVVQQ 665
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 101 bits (252), Expect = 2e-22
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 22/244 (9%)
Query: 7 MISNKVSVCYGEK-----RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM--NETI 59
+I + VS Y +K +AL + +L +N VT +IG +G GKST ++ N + +ET
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 60 DNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLG 117
V I + K I + V RLR +G+VFQ P F ++I ++A+GP ++ LG
Sbjct: 67 QTIVGDYAIPANLKKIKE----VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP-VN-LG 120
Query: 118 NNKADIDQIVEMSLKKASLFNE-VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
NK + + V LK L + VK F LSGGQ++RV +A +A++ +++DE
Sbjct: 121 ENKQEAYKKVPELLKLVQLPEDYVKRSPFE----LSGGQKRRVALAGIIAMDGNTLVLDE 176
Query: 177 PCSALDPIATASVEELIHELRESLT--IVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234
P LDP L L + I++VTH+M Q R++ + H G ++
Sbjct: 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
Query: 235 KMFT 238
++F+
Sbjct: 237 EIFS 240
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 100 bits (252), Expect = 2e-22
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
Query: 12 VSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
+S Y G L ++L +P A++GPSG GKST L L + + + GE+ L
Sbjct: 340 LSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ-----GEVTL 394
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130
DG S LR R+ + Q + F ++ DN+ LG A D+ + +
Sbjct: 395 DG---VSVSSLQDELRRRISVFAQDAHLFDTTVRDNLR-------LGRPDAT-DEELWAA 443
Query: 131 LKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
L++ L + ++ L + LSGG++QR+ +ARAL + ++L+DEP LD
Sbjct: 444 LERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 503
Query: 184 IATASVEELIHELRESLTIVIVTHS 208
+ + E + T+V++TH
Sbjct: 504 GTESELLEDLLAALSGKTVVVITHH 528
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 100 bits (251), Expect = 3e-22
Identities = 69/222 (31%), Positives = 126/222 (56%), Gaps = 18/222 (8%)
Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
++ I + ++IG +G GKST R ++ + E F G++ +DG+ + ++ +V
Sbjct: 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGELL--TAENVWN 78
Query: 85 LRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKD 142
LR ++GMVFQ P N F ++ D+VA+G G+ + ++ + V+ +L ++ + K
Sbjct: 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI--PREEMIKRVDEALLAVNML-DFKT 135
Query: 143 RLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--L 200
R + + LSGGQ+QRV +A +A+ PE+I++DE S LDP + +IHE++E L
Sbjct: 136 R---EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 201 TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242
T++ +TH + +AA S R + G +++E ++F D
Sbjct: 193 TVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSED 233
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 100 bits (252), Expect = 3e-22
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 22/222 (9%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+S YG +RAL D++ + AL+GP+G GKST L R+ G+I +
Sbjct: 7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-----EGQISVA 61
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD--IDQIVE 128
G ++ ++ + AR+G+VFQ+P S+ N+ Y +HGL +A I +
Sbjct: 62 GHDLRRAPRAAL---ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAAL-- 116
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
L + L +R L+GG ++RV IARAL P ++L+DEP LDP + A+
Sbjct: 117 --LARLGL----AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170
Query: 189 VEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
+ + L + L+++ TH + + R + H G ++
Sbjct: 171 IVAHVRALCRDQGLSVLWATHLVDE-IEADDRLVVLHRGRVL 211
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 100 bits (251), Expect = 3e-22
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 28/217 (12%)
Query: 12 VSVCYG--EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
V+ Y ++ AL I+L I AL+G SG GKST + + R E D +G+I+
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PD----SGQIL 390
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
LDG ++ ++ LR +V +V Q F +I +N+AYG ++A+I++ +
Sbjct: 391 LDGHDLADYTLA--SLRRQVALVSQDVVLFNDTIANNIAYG---RTEQADRAEIERALAA 445
Query: 130 SLKKASLFNEVKDRL---FH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
+ + + D+L + LLSGGQ+QR+ IARAL + ++++DE SAL
Sbjct: 446 AYAQ-----DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 182 DPIATASVEELIHELRESLTIVIVTH---SMQQAARV 215
D + V+ + L + T +++ H ++++A R+
Sbjct: 501 DNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRI 537
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 100 bits (251), Expect = 4e-22
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
N VS YGE+ L ++L IP A++G SGCGKST LR L + + +
Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP------SAGEL 69
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVE 128
L G + + R ++FQ P K + DNV G + G + Q
Sbjct: 70 LAGTAPLAEAREDTR------LMFQDARLLPWKKVIDNVGLGLK----GQWRDAALQ--- 116
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
+L L DR + LSGGQ+QRV +ARAL P ++L+DEP ALD +
Sbjct: 117 -ALAAVGL----ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171
Query: 189 VEELIHEL--RESLTIVIVTHSMQQAARVSQR 218
+++LI L + T+++VTH + +A ++ R
Sbjct: 172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 99.7 bits (249), Expect = 6e-22
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 12 VSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
V+ Y E AL +IN KIP AL+G SG GKST L R + + GEI+
Sbjct: 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEIL 401
Query: 70 LDGKNI--YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127
LDG ++ Y + LR +V +V Q + F +I +N+AY ++ I++
Sbjct: 402 LDGHDLRDYTLA----SLRNQVALVSQNVHLFNDTIANNIAYARTEQ---YSREQIEEAA 454
Query: 128 EMSLKKASLFNEVKDRLFH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
M+ A F D + LLSGGQ+QR+ IARAL + ++++DE SALD
Sbjct: 455 RMA--YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 183 PIATASVEELIHELRESLTIVIVTH 207
+ +++ + EL+++ T +++ H
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAH 537
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 98.5 bits (246), Expect = 1e-21
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF---TGE 67
VS Y R + D++ + A++GP+G GKST + L R VF +G
Sbjct: 340 VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR--------VFDPQSGR 391
Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKAD-IDQI 126
I++DG +I +V LR + +VFQ F +SI DN+ G + D D+
Sbjct: 392 ILIDGTDI--RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG---------RPDATDEE 440
Query: 127 VEMSLKKASL--FNEVKDRLF-----HDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179
+ + ++A F E K + LSGG++QR+ IARAL +P ++++DE S
Sbjct: 441 MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATS 500
Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVE 229
ALD A V+ + EL + T I+ H + R + R +F G +VE
Sbjct: 501 ALDVETEAKVKAALDELMKGRTTFIIAHRL-STVRNADRILVFDNGRVVE 549
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 98.6 bits (246), Expect = 1e-21
Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY-QS 78
+A+ + L++ + ++G SGCGKSTF R + + + D GE+ GK++
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD-----GEVAWLGKDLLGMK 89
Query: 79 SVDVVRLRARVGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
+ +R+ + M+FQ P NP +I + +A R + ++ ++ V+ + K
Sbjct: 90 DDEWRAVRSDIQMIFQDPLASLNP-RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV 148
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
L + +R H+ SGGQ QR+ IARAL + P++I+ DEP SALD A V L+
Sbjct: 149 GLLPNLINRYPHE---FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205
Query: 195 EL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
+L RE L+++ + H + +S R + ++GH VE D+++ P T+
Sbjct: 206 QLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 97.2 bits (243), Expect = 4e-21
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 27/208 (12%)
Query: 10 NKVSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGE 67
N VS Y + L ++L+I AL+G +GCGKST L+ L R + GE
Sbjct: 342 NNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGE 396
Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127
I+L+G+ I + LR + +V QR + F ++ DN+ L A + ++
Sbjct: 397 ILLNGQPI--ADYSEAALRQAISVVSQRVHLFSATLRDNLL-------LAAPNASDEALI 447
Query: 128 EMSLKKASLFN--EVKDRLFHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCS 179
E+ L++ L E L +A L LSGG+Q+R+ IARAL + ++L+DEP
Sbjct: 448 EV-LQQVGLEKLLEDDKGL--NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504
Query: 180 ALDPIATASVEELIHELRESLTIVIVTH 207
LD + EL+ E ++ T++++TH
Sbjct: 505 GLDAETERQILELLAEHAQNKTVLMITH 532
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 95.4 bits (238), Expect = 1e-20
Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 17/218 (7%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR-LRARVGMVFQ 94
A++G SGCGKST R L M ET GE+ G+++ ++ + + LR ++ +VFQ
Sbjct: 45 AVVGESGCGKSTLARLLT-MIETPT----GGELYYQGQDLLKADPEAQKLLRQKIQIVFQ 99
Query: 95 RP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150
P NP K + + I+ + ++ + M + K L E DR H +
Sbjct: 100 NPYGSLNP-RKKVGQILEEPLLINTSLSAAERREKALAM-MAKVGLRPEHYDRYPH---M 154
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--LTIVIVTHS 208
SGGQ+QR+ IARAL ++P+V++ DEP SALD A V L+ +L++ L+ V ++H
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214
Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
+ ++ + ++G VE+ +++F P TQ
Sbjct: 215 LSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 95.1 bits (236), Expect = 2e-20
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 20/237 (8%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
++++ YG+ ++ ++IP TA+IGP+GCGKST LR L+R+ G +
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH-----GHVW 65
Query: 70 LDGKNIYQ-SSVDVVRLRARVGMVFQRP-NPFPKSIYDNVAYGPRIHG---LGNNKADID 124
LDG++I +S +V R R+G++ Q P ++ + VA G H K D
Sbjct: 66 LDGEHIQHYASKEVAR---RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-- 120
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
E ++ KA + LSGGQ+QR IA LA ++L+DEP + LD
Sbjct: 121 ---EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 185 ATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
+ EL+ EL + T+ V H + QA R + G +V + ++ TA
Sbjct: 178 HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 95.0 bits (236), Expect = 2e-20
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
+ +FD++ + A++GP+G GK+T + L R+ + G+I++DG +I +
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDI--N 400
Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
+V LR + VFQ F +SI +N+ LG A +++ E + K A+ +
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIR-------LGREGATDEEVYEAA-KAAAAHD 452
Query: 139 EVKDRLF-------HDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
+ R + LSGG++QR+ IARA+ N ++++DE SALD A V+
Sbjct: 453 FILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN 512
Query: 192 LIHELRESLTIVIVTHSM 209
I LR++ T I+ H +
Sbjct: 513 AIDALRKNRTTFIIAHRL 530
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 94.6 bits (236), Expect = 2e-20
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83
+ +L + AL+G SG GKST + + + + ++GEI+ DG + +V
Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----WSGEILFDGIPREEIPREV- 550
Query: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143
L V MV Q F ++ DN+ L + +V + K A++ + + R
Sbjct: 551 -LANSVAMVDQDIFLFEGTVRDNLT-------LWDPTIPDADLVR-ACKDAAIHDVITSR 601
Query: 144 -------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
L + LSGGQ+QR+ IARAL NP ++++DE SALDP +++ +
Sbjct: 602 PGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR-- 659
Query: 197 RESLTIVIVTH 207
R T +IV H
Sbjct: 660 RRGCTCIIVAH 670
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 94.4 bits (235), Expect = 2e-20
Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 23/240 (9%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKST----FLRCLNRMNETIDNCVFTGEIILDG 72
+ +I+ + L+G SG GKST LR +N GEI DG
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS----------QGEIWFDG 346
Query: 73 KNIYQ-SSVDVVRLRARVGMVFQRPNPF--PK-SIYDNVAYGPRIHGLGNNKADIDQIVE 128
+ ++ + ++ +R R+ +VFQ PN P+ ++ + G R+H + A +Q V
Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
+++ L E + R + SGGQ+QR+ IARAL + P +I++DEP S+LD A
Sbjct: 407 AVMEEVGLDPETRHRY---PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463
Query: 189 VEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
+ L+ L++ L + ++H + + + + G +VE+ D +++F AP + T+
Sbjct: 464 ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTR 523
Score = 82.1 bits (203), Expect = 1e-16
Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 19/235 (8%)
Query: 24 DINLKIPQNSVTALIGPSGCGKS-TFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV 82
D++L+I AL+G SG GKS T L L R+ + +G+I G+++ +S
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSIL-RLLPSPPVVYPSGDIRFHGESLLHASEQT 85
Query: 83 VR-LRA-RVGMVFQRP----NPF---PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
+R +R ++ M+FQ P NP K +Y+ ++ +H +A +I+ L +
Sbjct: 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS----LHRGMRREAARGEILN-CLDR 140
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
+ K RL LSGG++QRV IA AL PE+++ DEP +ALD A + +L+
Sbjct: 141 VGIRQAAK-RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL 199
Query: 194 HELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
EL++ L ++ +TH++ +++ R A+ G VE++ +F+AP+ TQ
Sbjct: 200 RELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQ 254
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 94.5 bits (235), Expect = 2e-20
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 17/235 (7%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK---- 73
E AL +I+ +N + +IG SG GKST + N + ++ + G+I + K
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 74 ----NIYQSSV-DVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126
N Y + + LR RV MVFQ P F +I ++ +GP LG K++ ++
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV--ALGVKKSEAKKL 155
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
+ L K L + +R LSGGQ++RV IA LA+ PE+++ DEP + LDP
Sbjct: 156 AKFYLNKMGLDDSYLER---SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 187 ASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
+ +LI + + + T+ ++TH+M+ V+ + G +++ ++FT
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 94.6 bits (235), Expect = 2e-20
Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 19/227 (8%)
Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKST-FLRCLNRMNETIDNCVFT 65
+ + ++ Y +R + D++L + + L+GP+G GK+T F + +
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD------A 57
Query: 66 GEIILDGKNIYQSSVDVVRLRAR--VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD 122
G II+D ++I S+ + RAR +G + Q + F + S+YDN+ +I + +
Sbjct: 58 GNIIIDDEDI---SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR 114
Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
D+ E L + ++D + LSGG+++RV IARALA NP+ IL+DEP + +D
Sbjct: 115 EDRANE--LMEEFHIEHLRDSM---GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 183 PIATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
PI+ ++ +I LR+S L ++I H++++ V +RA + GHL+
Sbjct: 170 PISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 93.6 bits (233), Expect = 4e-20
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTF---LRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
L I+L I + A++G SG GKST L CL++ +G + G+++
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--------SGTYRVAGQDVATL 75
Query: 79 SVD-VVRLR-ARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
D + +LR G +FQR + + NV P ++ G + + L++
Sbjct: 76 DADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV-PAVYA-GLERKQRLLRAQELLQRLG 133
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
L +DR+ + S LSGGQQQRV IARAL +VIL DEP ALD + V ++H+
Sbjct: 134 L----EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189
Query: 196 LRE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
LR+ T++IVTH Q AA+ ++R G +V
Sbjct: 190 LRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 93.0 bits (231), Expect = 7e-20
Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSV 80
L +++ I + + A++G SG GKST L L ++ +G++I +G+ + + SS
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-----SGDVIFNGQPMSKLSSA 79
Query: 81 DVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
LR + +G ++Q + P + +NVA P + G A+I+ L L
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAM-PLLIG-KKKPAEINSRALEMLAAVGL-- 135
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196
+ R H S LSGG++QRV IARAL NP ++L DEP LD S+ +L+ EL
Sbjct: 136 --EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193
Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
+ ++VTH +Q A R+S++ M G L E
Sbjct: 194 LQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTAE 226
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 92.5 bits (230), Expect = 9e-20
Identities = 65/202 (32%), Positives = 113/202 (55%), Gaps = 21/202 (10%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
EK L D++ + Q ++IG +G GKST +R ++ + E +G+II+DG +
Sbjct: 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-----SGQIIIDGDLL-- 71
Query: 78 SSVDVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
+ +V +R ++GMVFQ P N F ++ D+VA+G L N +++ E +
Sbjct: 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG-----LENKGIPHEEMKERVNEALE 126
Query: 136 L--FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
L + K+R + + LSGGQ+QRV IA A+A+ P++I++DE S LDP + + I
Sbjct: 127 LVGMQDFKER---EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183
Query: 194 HELRES--LTIVIVTHSMQQAA 213
+R+ +T++ +TH + + A
Sbjct: 184 KGIRDDYQMTVISITHDLDEVA 205
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 92.6 bits (230), Expect = 9e-20
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 11 KVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
VS Y G ++AL + + + L G SG GKST L+ + + G+I
Sbjct: 6 HVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-----AGKIW 60
Query: 70 LDGKNIYQ-SSVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIV 127
G +I + + +V LR ++GM+FQ + +++YDNVA P I G + DI + V
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI-PLIIA-GASGDDIRRRV 118
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+L K L ++ K+ LSGG+QQRV IARA+ P V+L DEP LD +
Sbjct: 119 SAALDKVGLLDKAKNFPIQ----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174
Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232
+ L E R +T+++ TH + +R S R GHL
Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 92.4 bits (229), Expect = 1e-19
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 26/233 (11%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
K++ + + +AL ++L I + AL+GPSG GKST LR L+ + T D I L
Sbjct: 9 KLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-ITGDKSA-GSHIEL 66
Query: 71 DGKNIYQS---SVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNN------- 119
G+ + + + D+ + RA G +FQ+ N + S+ +NV G LG+
Sbjct: 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG----ALGSTPFWRTCF 122
Query: 120 ---KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
+ Q +L + + + R+ S LSGGQQQRV IARAL +VIL DE
Sbjct: 123 SWFTREQKQRALQALTRVGMVHFAHQRV----STLSGGQQQRVAIARALMQQAKVILADE 178
Query: 177 PCSALDPIATASVEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHL 227
P ++LDP + V + + ++ ++ +T+V+ H + A R +R GH+
Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 91.8 bits (228), Expect = 1e-19
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 14 VCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK 73
V Y + + +L + + A++GPSG GKST L + E +G I ++ +
Sbjct: 6 VRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-----SGSIKVNDQ 60
Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIH-GLGNNKADIDQIVEMSL 131
+ + + V M+FQ N F ++ N+ G +H GL N +++V+ +
Sbjct: 61 SHTGLA----PYQRPVSMLFQENNLFAHLTVRQNIGLG--LHPGLKLNAEQQEKVVDAAQ 114
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
+ + DRL LSGGQ+QRV +AR L ++L+DEP SALDP+ +
Sbjct: 115 QVG--IADYLDRL---PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169
Query: 192 LIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDT 233
L+ +L T+++VTH + A ++ + A+ G + D
Sbjct: 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSDC 213
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 91.8 bits (229), Expect = 2e-19
Identities = 70/202 (34%), Positives = 97/202 (48%), Gaps = 42/202 (20%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMN---ETIDNCVFTGEIILDGKNIYQ 77
+ I+L + L+GPSGCGKST LR M E I +GEI + G+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLR----MVAGLERIT----SGEIWIGGRV--- 67
Query: 78 SSVDVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
V+ + R + MVFQ +P S+ +N+AYG +I G+ KA+I++ V + +
Sbjct: 68 --VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP--KAEIEERVAEAARILE 123
Query: 136 L--FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS----- 188
L + K R LSGGQ+QRV + RA+ P V L DEP S LD A
Sbjct: 124 LEPLLDRKPRE------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD----AKLRVQM 173
Query: 189 -VEELIHELRESL--TIVIVTH 207
+E I L L T + VTH
Sbjct: 174 RLE--IQRLHRRLKTTSLYVTH 193
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 91.5 bits (228), Expect = 2e-19
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQSS 79
+NL +P +TA+ G SG GK++ + L R + G I+L+G+ ++ +
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK--------GRIVLNGRVLFDAE 66
Query: 80 VDV---VRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135
+ R R+G VFQ FP + N+ YG + A D+IV + L
Sbjct: 67 KGICLPPEKR-RIGYVFQDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVAL-LGIEP 120
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD--------PIATA 187
L DR LSGG++QRV I RAL PE++LMDEP ++LD P
Sbjct: 121 LL----DRYPGS---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY--- 170
Query: 188 SVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
+E L E+ + I+ V+HS+ + R++ R + G +
Sbjct: 171 -LERLAREIN--IPILYVSHSLDEILRLADRVVVLEQGKVK 208
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 89.9 bits (223), Expect = 5e-19
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 17/223 (7%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
+VS G + + +++ P S+T L+GP+G GKST LR L G + L
Sbjct: 6 RVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA-----GTVDL 60
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYG--PRIHGLGNNKADIDQI 126
G +++ S R RAR + ++ + P ++ D VA G P + +
Sbjct: 61 AGVDLHGLSR---RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
V+ +L + L + + DR D S LSGG++QRV +ARALA P+++L+DEP + LD A
Sbjct: 118 VDRALARTEL-SHLADR---DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173
Query: 187 ASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228
L+ EL +T+V H + AA + G +V
Sbjct: 174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 89.5 bits (223), Expect = 7e-19
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
K +N +P AL+GPSG GK++ L N + + G + ++G I
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLL------NALLGFLPYQGSLKING--IELR 414
Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
+D R + V Q P ++ DNV LGN A +Q+ + +L+ A + +
Sbjct: 415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVL-------LGNPDASDEQL-QQALENAWV-S 465
Query: 139 EVKDRLFH--------DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190
E L A+ LS GQ QR+ +ARAL +++L+DEP ++LD + V
Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232
+ ++ T ++VTH ++ A+ Q M G +V++ D
Sbjct: 526 QALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD-GQIVQQGD 566
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 87.6 bits (218), Expect = 3e-18
Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 38/258 (14%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT----- 65
+SV + +AL D++L + + +IGP+G GK+T + D V T
Sbjct: 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM----------D--VITGKTRP 54
Query: 66 --GEIILDGKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDN----VAYGPRIHGL- 116
G ++ G ++ + + ++ RA +G FQ+P F ++++N + +
Sbjct: 55 DEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL 112
Query: 117 --GNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILM 174
+ + D+I E+ L+ L +E DRL A LLS GQ+Q + I L +P+++L+
Sbjct: 113 FFRLSAEEKDRIEEV-LETIGLADEA-DRL---AGLLSHGQKQWLEIGMLLMQDPKLLLL 167
Query: 175 DEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234
DEP + + T EL+ L ++V+V H M+ ++ + + H G ++ E D
Sbjct: 168 DEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227
Query: 235 KMFTAPSDQRTQDYIMGR 252
++ +D R + +GR
Sbjct: 228 QV---QADPRVIEVYLGR 242
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 87.5 bits (217), Expect = 3e-18
Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 29/229 (12%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM-NETIDNCVFTGEIIL 70
+S +G++ A+ +I+L +P+NSV L+GP+G GKST L+ + + T +GEII
Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT------SGEIIF 59
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHG--LGNNKADIDQIV 127
DG + + ++G + + P + + +N+ ++H LG + ID++
Sbjct: 60 DGHPWTRKDLH------KIGSLIESPPLYENLTARENL----KVHTTLLGLPDSRIDEV- 108
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
L L N K + A S G +QR+ IA AL +P+++++DEP + LDPI
Sbjct: 109 ---LNIVDLTNTGKKK----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQ 161
Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDK 235
+ ELI + +T+++ +H + + +++ + G L + +K
Sbjct: 162 ELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 86.8 bits (215), Expect = 5e-18
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
YG+K + ++ + + L+GP+G GK+T LR L + G I L G+ +
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-----AGSISLCGEPV 71
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
+ R RVG+V Q N P ++ +N+ R GL + A +V L+ A
Sbjct: 72 PSRAR---HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL--SAAAARALVPPLLEFA 126
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
L N+ ++ LSGG ++R+ +ARAL +P+V+++DEP + LDP A L+
Sbjct: 127 KLENKADAKV----GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA----RHLMW 178
Query: 195 ELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
E SL TI++ TH M++A R+ R + G + E
Sbjct: 179 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 86.7 bits (215), Expect = 5e-18
Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
V G+ + L +I+ + + GPSGCGKST L+ + + +G ++
Sbjct: 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-----SGTLL 65
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+G++I S++ R +V Q P F ++YDN+ + +I N + D ++
Sbjct: 66 FEGEDI--STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR---NQQPDPAIFLD- 119
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L++ +L + + + + LSGG++QR+ + R L P+V+L+DE SALD +V
Sbjct: 120 DLERFALPDTILTKNIAE---LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 190 EELIHELRESLTIVI--VTHS 208
E+IH I + VTH
Sbjct: 177 NEIIHRYVREQNIAVLWVTHD 197
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 86.4 bits (214), Expect = 6e-18
Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 26/226 (11%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
VS YG+K + ++ + L+GP+G GKST R + M G+I +
Sbjct: 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-----SPDAGKITVL 101
Query: 72 GKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
G + RL RAR+G+V Q N + ++ +N+ R G+ + +I+ ++
Sbjct: 102 GVPV----PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM--STREIEAVIPS 155
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L+ A L ++ R+ S LSGG ++R+ +ARAL +P+++++DEP + LDP A
Sbjct: 156 LLEFARLESKADARV----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA---- 207
Query: 190 EELIHELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
LI E SL TI++ TH M++A R+ R + G + E
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 85.9 bits (213), Expect = 9e-18
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 36/259 (13%)
Query: 10 NKVSVCYGEKRALFD----INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
+K+SV +G++ A F I+ + Q V ++G SG GKS + L M ID +
Sbjct: 7 DKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKS--VSSLAIMG-LID---YP 60
Query: 66 GEII-----LDGKNIYQSSVDVVR--LRARVGMVFQRP----NPFPKSIYDNVAYGPRIH 114
G ++ +G+++ + S R + A V M+FQ P NP + + ++H
Sbjct: 61 GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGF-QIMEAIKVH 119
Query: 115 GLGNNKADIDQIVEMSLKKASLFNEV-----KDRLFHDASLLSGGQQQRVCIARALAVNP 169
GN K + ++ L N+V RL LSGG QRV IA A+A P
Sbjct: 120 QGGNKKTRRQRAID-------LLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRP 172
Query: 170 EVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHL 227
++++ DEP +ALD A + EL+ EL +E++ +V++TH + A + + + + G +
Sbjct: 173 KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 228 VEEDDTDKMFTAPSDQRTQ 246
VE +F AP TQ
Sbjct: 233 VETGKAHDIFRAPRHPYTQ 251
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 85.8 bits (213), Expect = 1e-17
Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 35/243 (14%)
Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV-- 63
M+ ++ Y FD L + + A++GPSG GKST L N +
Sbjct: 1 MLKLTDITWLYHHLPMRFD--LTVERGERVAILGPSGAGKSTLL-----------NLIAG 47
Query: 64 F----TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIH-GLG 117
F +G + L+G++ + R V M+FQ N F ++ N+ G ++ GL
Sbjct: 48 FLTPASGSLTLNGQDHTTTPPS----RRPVSMLFQENNLFSHLTVAQNIGLG--LNPGLK 101
Query: 118 NNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEP 177
N A +++ ++ ++ + ++ RL LSGGQ+QRV +AR L ++L+DEP
Sbjct: 102 LNAAQREKLHAIA-RQMGI-EDLLARL---PGQLSGGQRQRVALARCLVREQPILLLDEP 156
Query: 178 CSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDK 235
SALDP + L+ ++ LT+++V+HS++ AAR++ R+ + G + + TD+
Sbjct: 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216
Query: 236 MFT 238
+ +
Sbjct: 217 LLS 219
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 84.9 bits (210), Expect = 2e-17
Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQR 95
L+GP+G GK+T LR + G I + + + +G V QR
Sbjct: 10 GLLGPNGAGKTTLLRAI------------LGLIPPAKGTVKVAGASPGKGWRHIGYVPQR 57
Query: 96 PN---PFPKSIYDNVAYGP--RIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150
FP S+ V G I L V +L++ L E+ DR +
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL-TELADRPVGE--- 113
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209
LSGGQ+QRV +ARALA P V+L+DEP + LD + EL EL I++ TH +
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 210 QQAARVSQRAAMFH 223
QA R + +
Sbjct: 174 AQAMATCDRVVLLN 187
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 85.0 bits (210), Expect = 2e-17
Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 11 KVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
VS Y + AL +INL I + +IG +G GKST LN + G+++
Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-----KGKVL 60
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIV 127
+ G + S + +R VG+VFQ P +++ +++A+GP L +I + V
Sbjct: 61 VSGIDTGDFS-KLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE--NLCLPPIEIRKRV 117
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+ +L + L + LSGGQ Q V +A L + PE ++ DE S LDP +
Sbjct: 118 DRALAEIGL----EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 188 SVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
+V E I +L E TIV +TH++++ + R + G +V E + + + + S
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVS 227
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 82.5 bits (204), Expect = 9e-17
Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
+ AL ++N + + + GP+G GKST L + R + + G+I + +
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE-----GDIRFHDIPLTK 381
Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
+D R+R+ +V Q P F ++ +N+A LG A +I E + AS+
Sbjct: 382 LQLDS--WRSRLAVVSQTPFLFSDTVANNIA-------LGRPDATQQEI-EHVARLASVH 431
Query: 138 N-----------EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
+ EV +R +LSGGQ+QR+ IARAL +N E++++D+ SA+D
Sbjct: 432 DDILRLPQGYDTEVGER----GVMLSGGQKQRISIARALLLNAEILILDDALSAVD---G 484
Query: 187 ASVEELIHELR---ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
+ +++H LR E T++I H + S+ M H GH+ + + D++
Sbjct: 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH-GHIAQRGNHDQLAQQS 540
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 82.0 bits (203), Expect = 1e-16
Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 25/200 (12%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
G+K L I+ ++ A+IGPSG GKST L R+ I +G + LDG ++
Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKST----LARLIVGIWPPT-SGSVRLDGADLK 383
Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136
Q D +G + Q FP ++ +N+A G N AD ++I+E + K +
Sbjct: 384 Q--WDRETFGKHIGYLPQDVELFPGTVAENIAR------FGEN-ADPEKIIEAA--KLAG 432
Query: 137 FNEVKDRL--FHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
+E+ RL +D + LSGGQ+QR+ +ARAL +P+++++DEP S LD +
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 189 VEELIHELR-ESLTIVIVTH 207
+ I L+ +T+V++TH
Sbjct: 493 LANAIKALKARGITVVVITH 512
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 81.8 bits (202), Expect = 2e-16
Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 42/259 (16%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET------------- 58
++ + K L +I+ I + V ++G SG GKS + L M++
Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65
Query: 59 IDNCVFTGEIILDGKN-------IYQSSVDVV--------RLRARVGMVFQRPNPF--PK 101
+ C + G+ + VD R+R R+ ++ QR
Sbjct: 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125
Query: 102 SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK--DRLFHDASLLSGGQQQRV 159
++ DNV + L + + V ++ L V+ R+ H A LSGG++QRV
Sbjct: 126 TVLDNV-----LEALEEIGYEGKEAVGRAVD---LIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 160 CIARALAVNPEVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQ 217
+AR LA P + L DEP LDP V + E +++V+ +H + +S
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237
Query: 218 RAAMFHMGHLVEEDDTDKM 236
+A G + EE D++
Sbjct: 238 KAIWLENGEIKEEGTPDEV 256
Score = 74.8 bits (184), Expect = 2e-14
Identities = 63/236 (26%), Positives = 119/236 (50%), Gaps = 21/236 (8%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDN--CVFTGEII 69
+SV G +A+ +++L++ + + ++G SG GK+T + + + E V G+
Sbjct: 290 ISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW 349
Query: 70 LDGKNIYQSSVDVVRLRAR--VGMVFQRPNPFP-KSIYDNVAYGPRIH---GLGNNKADI 123
+D + + D R RA+ +G++ Q + +P +++ DN+ + L KA I
Sbjct: 350 VD---MTKPGPDG-RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI 405
Query: 124 D-QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
++V +KA E+ D+ + LS G++ RV +A+ L P ++++DEP +D
Sbjct: 406 TLKMVGFDEEKAE---EILDKYPDE---LSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
Query: 183 PIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
PI V I + RE + T +IV+H M V RAA+ G +V+ D +++
Sbjct: 460 PITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 81.4 bits (201), Expect = 2e-16
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 17/200 (8%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV-VRLRAR-VGMVF 93
ALIG SG GKST L L +++ +GE+ L G+ ++Q + +LRA+ VG VF
Sbjct: 40 ALIGESGSGKSTLLAILAGLDDG-----SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94
Query: 94 QRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLS 152
Q P + +NV + G + ++ + + L++ L RL H + LS
Sbjct: 95 QSFMLIPTLNALENVELPALLRGESSRQSR-NGAKAL-LEQLGL----GKRLDHLPAQLS 148
Query: 153 GGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQ 210
GG+QQRV +ARA P+V+ DEP LD + +L+ L T+++VTH +Q
Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208
Query: 211 QAARVSQRAAMFHMGHLVEE 230
AAR R G L EE
Sbjct: 209 LAARC-DRRLRLVNGQLQEE 227
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 81.0 bits (200), Expect = 3e-16
Identities = 55/232 (23%), Positives = 117/232 (50%), Gaps = 17/232 (7%)
Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66
+ + ++ YG + AL +++ + + + +GP+G GKST ++ + T +G
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKII-----TGYLPPDSG 57
Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIY--DNVAYGPRIHGLGNNKADID 124
+ + G+++ Q+ +V + +G + + NP +Y + + + I+G+ +
Sbjct: 58 SVQVCGEDVLQNPKEV---QRNIGYLPEH-NPLYLDMYVREYLQFIAGIYGMKGQL--LK 111
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
Q VE ++ L E ++ LS G +QRV +A+AL +P+V+++DEP + LDP
Sbjct: 112 QRVEEMIELVGLRPEQHKKI----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN 167
Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
+ +I + + TI++ TH MQ+ + R + + G +V + D++
Sbjct: 168 QLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 80.5 bits (199), Expect = 3e-16
Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 30/212 (14%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
L +++L + AL GPSG GKST L+ L N D+ G I + V
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA-NYLPDS----GRI---LVRHEGAWV 74
Query: 81 DVVRLRAR---------VGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130
D+ + R +G V Q P S + VA G+ A
Sbjct: 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAA--------R 126
Query: 131 LKKASLFN--EVKDRLFHDA-SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+ L + +RL+H + SGG+QQRV IAR + ++L+DEP ++LD
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQR 218
V ELI E ++ + H + V+ R
Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEVRELVADR 218
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 80.4 bits (198), Expect = 5e-16
Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
VS YG+K + D++ I + L+GP+G GKST R L M G+I +
Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR-----GKITVL 64
Query: 72 GKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129
G+ + RL R +G+V Q N P+ ++ +N+ R G+ + +I+ ++
Sbjct: 65 GEPVPSR----ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM--STREIEAVIPS 118
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L+ A L ++ R+ +LLSGG ++R+ +ARAL +P+++++DEP + LDP A
Sbjct: 119 LLEFARLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA---- 170
Query: 190 EELIHELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
LI E SL TI++ TH M++A R+ R + G + E
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 80.3 bits (198), Expect = 5e-16
Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 21/249 (8%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEI 68
+ +S YG + D++ + V ++G SG GKST L CL R+ G
Sbjct: 7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------APDHGTA 60
Query: 69 ILDGKN-----IYQSSVDVVRLRARV--GMVFQRP-NPFPKSIYDNVAYGPRIHGLG-NN 119
++ +YQ S R R G V Q P + + G R+ +G +
Sbjct: 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH 120
Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179
+I L++ + R+ SGG QQR+ IAR L P ++ MDEP
Sbjct: 121 YGNIRAAAHDWLEEVEI---DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177
Query: 180 ALDPIATASVEELIHEL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237
LD A + +L+ L R+ L ++IVTH + A ++QR + G +VE TD++
Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237
Query: 238 TAPSDQRTQ 246
P TQ
Sbjct: 238 DDPQHPYTQ 246
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 79.7 bits (196), Expect = 7e-16
Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 66/245 (26%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL-DGKNIYQSSVDV 82
D+N + + A +G SGCGKST L+ + R+ + + G+II+ D N+ +++
Sbjct: 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE-----GDIIINDSHNL--KDINL 455
Query: 83 VRLRARVGMVFQRPNPFPKSIYDNVAY------------------------------GPR 112
R+++G+V Q P F SI +N+ Y R
Sbjct: 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515
Query: 113 IHGLGN-----NKADIDQIVEM-----SLKKASLFNEVKDRLFHD--------------- 147
G+ N D ++++EM ++K + + + K L HD
Sbjct: 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575
Query: 148 -ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR--ESLTIVI 204
AS LSGGQ+QR+ IARA+ NP+++++DE S+LD + V++ I+ L+ E+ +I
Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635
Query: 205 VTHSM 209
+ H +
Sbjct: 636 IAHRL 640
Score = 73.1 bits (179), Expect = 6e-14
Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 60 DNCVF--TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLG 117
D+ VF +G+I+LDG +I ++ LR +V Q P F SIY+N+ +G
Sbjct: 1269 DSTVFKNSGKILLDGVDI--CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326
Query: 118 NNK-----ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVI 172
+ K A ID+ +E SL N+ + LSGGQ+QR+ IARAL P+++
Sbjct: 1327 DVKRACKFAAIDEFIE------SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380
Query: 173 LMDEPCSALDPIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFH----MGH 226
L+DE S+LD + +E+ I ++++ TI+ + H + R S + +F+ G
Sbjct: 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGS 1439
Query: 227 LVEEDDTDKMFTAPSDQRTQDYI 249
V+ T + + D + Y+
Sbjct: 1440 FVQAHGTHEELLSVQDGVYKKYV 1462
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 79.3 bits (195), Expect = 8e-16
Identities = 55/204 (26%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
+N+ +N +TA +G +G GK+T L L + +G +++ GK+I ++++D VR
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT-----SGTVLVGGKDI-ETNLDAVR 1002
Query: 85 LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143
+GM Q F ++ +++ + ++ G +A ++ +E L+ L ++ +
Sbjct: 1003 --QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE--MEAMLEDTGLHHKRNE- 1057
Query: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIV 203
+A LSGG Q+++ +A A + +V+++DEP S +DP + S+ +L+ + R TI+
Sbjct: 1058 ---EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114
Query: 204 IVTHSMQQAARVSQRAAMFHMGHL 227
+ TH M +A + R A+ G L
Sbjct: 1115 MSTHHMDEADLLGDRIAIISQGRL 1138
Score = 55.0 bits (132), Expect = 2e-08
Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 48/208 (23%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQR 95
L+G +G GK+T + L T D V +G+ + GK+I + DV
Sbjct: 1969 GLLGVNGAGKTTTFKML-----TGDTTVTSGDATVAGKSILTNISDV------------- 2010
Query: 96 PNPFPKSIYDNVAYGPRIHGL-----------------GNNKADIDQIVEMSLKKASLFN 138
+ N+ Y P+ + G +I+++ S++ L +
Sbjct: 2011 --------HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-S 2061
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE-LR 197
DRL A SGG ++++ A AL P ++L+DEP + +DP A + I +R
Sbjct: 2062 LYADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118
Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMG 225
E +V+ +HSM++ + R A+ G
Sbjct: 2119 EGRAVVLTSHSMEECEALCTRLAIMVKG 2146
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 79.5 bits (196), Expect = 8e-16
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+SV +G+ L ++L + + S+ L+GP+G GK+T LR +N T+ G +++
Sbjct: 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRA---INGTLTPT--AGTVLVA 63
Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYG--PRIHGLGNNKADIDQIVE 128
G ++ ++ RV V Q + F + V G P VE
Sbjct: 64 GDDV--EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD---PIA 185
++++ + + DR + LSGG++QRV +ARALA V+L+DEP ++LD +
Sbjct: 122 RAMERTGV-AQFADR---PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 186 T-ASVEELIHELRESLTIVIVTHSMQQAAR 214
T V L+ + + T V H + AAR
Sbjct: 178 TLELVRRLVDDGK---TAVAAIHDLDLAAR 204
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 78.6 bits (194), Expect = 1e-15
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 18/203 (8%)
Query: 10 NKVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+ VS Y + L +INL +P AL+G +G GKST L L + GEI
Sbjct: 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKST-LASLLMGYYPLTE----GEI 398
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
LDG+ + S V LR V MV Q P + NV G I ++ + Q +E
Sbjct: 399 RLDGRPLSSLSHSV--LRQGVAMVQQDPVVLADTFLANVTLGRDI-----SEEQVWQALE 451
Query: 129 MSLKKASLFNEVKD----RLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
++ A L + D L + LS GQ+Q + +AR L P+++++DE + +D
Sbjct: 452 T-VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 185 ATASVEELIHELRESLTIVIVTH 207
++++ + +RE T+V++ H
Sbjct: 511 TEQAIQQALAAVREHTTLVVIAH 533
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 77.4 bits (191), Expect = 3e-15
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT-GEIILDGKNIYQSSVDV 82
++L + + V AL+G SG GKS L C + T G ++LDGK + +
Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPCA--- 75
Query: 83 VRLRAR-VGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
LR R + + Q P NP + R L K D + +L+ L
Sbjct: 76 --LRGRKIATIMQNPRSAFNPL-----HTMHTHARETCLALGKPADDATLTAALEAVGL- 127
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196
L +SGG QR+ IA AL I+ DEP + LD +A A + +L+ +
Sbjct: 128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
Query: 197 -RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246
+ +L +++VTH M AR++ A+ G +VE+ D + +F AP T+
Sbjct: 188 QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 77.0 bits (189), Expect = 5e-15
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
Y ++ L +NL + VT L+G +GCGKST L+ + G ++ GK +
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK-----GAVLWQGKPL 65
Query: 76 YQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVE--MSL 131
S ++ LR +V VFQ P F I ++A+ R LG +A+I + V+ ++L
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR--NLGVPEAEITRRVDEALTL 123
Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
A F LS GQ++RV IA AL + +L+DEP + LDP +
Sbjct: 124 VDAQHFRH------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 192 LIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237
+I + + ++I +H + +S + G ++ ++F
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 75.0 bits (185), Expect = 2e-14
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT-GEI 68
+ V +K L +NL + + + A++GP+G GKST + + + T G I
Sbjct: 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTI--AGH--PSYEVTSGTI 59
Query: 69 ILDGKNIYQSSVDVVRLRARVGMV--FQRPNPFP---KSIYDNVAYGPRIHGLGNNKADI 123
+ G+++ + D RAR G+ FQ P P + A R G D+
Sbjct: 60 LFKGQDLLELEPDE---RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDL 116
Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASL---LSGGQQQRVCIARALAVNPEVILMDEPCSA 180
+++ K +L D F + S+ SGG+++R I + + P++ ++DE S
Sbjct: 117 LDFLKLLKAKLALLG--MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSG 174
Query: 181 LDPIATASVEELIHELR-ESLTIVIVTH 207
LD A V E I+ LR + +I+TH
Sbjct: 175 LDIDALKIVAEGINRLREPDRSFLIITH 202
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 73.8 bits (181), Expect = 4e-14
Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 10 NKVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
N V+V + AL D + +P S+ AL+G +G GKST + L + +G+I
Sbjct: 10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKI 64
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPN---PFPKSIYDNVAYGPRIHG--LGNNKADI 123
+I + V V Q FP + D V G H L K
Sbjct: 65 -----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
QIV +L + + E + R + LSGGQ++RV +ARA+A +VIL+DEP + +D
Sbjct: 120 RQIVTAALARVDMV-EFRHRQIGE---LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 184 IATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242
A + L+ ELR E T+++ TH++ M G ++ T+ FTA +
Sbjct: 176 KTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAENL 234
Query: 243 QR 244
+
Sbjct: 235 EL 236
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 73.3 bits (180), Expect = 5e-14
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 16/235 (6%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSV 80
L ++L P VT LIG +G GKST L+ L R GEI+LD + + SS
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-----EGEILLDAQPLESWSSK 81
Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLKKASLFN 138
R A + Q P ++ + VA G P LG A + VE ++ L
Sbjct: 82 AFARKVAYLPQ--QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-K 138
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
+ RL LSGG++QR IA +A + +L+DEP SALD V L+H L +
Sbjct: 139 PLAHRLVDS---LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 199 --SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251
LT++ V H + AAR G ++ + ++ + ++ MG
Sbjct: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPMG 250
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 73.0 bits (180), Expect = 8e-14
Identities = 70/264 (26%), Positives = 108/264 (40%), Gaps = 51/264 (19%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLN-RMNETIDNCVFTGEI 68
++ YG ++ D++ + V ++G SG GK+T L L+ R+ GE+
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD------AGEV 63
Query: 69 ILDGK-----NIYQSSVDVVRLRARV--GMVFQRPNPFPK---SIYDNVAYGPRIHGLGN 118
+ ++Y S R R G V Q P + S N+ G R+ +G
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI--GERLMAVGA 121
Query: 119 NK--------ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170
D + VE+ R+ + SGG QQR+ IAR L +P
Sbjct: 122 RHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFSGGMQQRLQIARNLVTHPR 171
Query: 171 VILMDEPCSALDPIATASVE--------ELIHELRESLTIVIVTHSMQQAARVSQRAAMF 222
++ MDEP LD SV+ L+ EL L +VIVTH + A ++ R +
Sbjct: 172 LVFMDEPTGGLD----VSVQARLLDLLRGLVRELG--LAVVIVTHDLAVARLLAHRLLVM 225
Query: 223 HMGHLVEEDDTDKMFTAPSDQRTQ 246
G +VE TD++ P TQ
Sbjct: 226 KQGRVVESGLTDQVLDDPQHPYTQ 249
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 72.6 bits (178), Expect = 1e-13
Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 36/256 (14%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETI--DNCVFTGEIILDGKNI 75
+ L D++L+I VTAL+G +G GKST L+ L + TG++ L+G+ +
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 76 YQSSVDVVRLRARVGMVFQRPNP-FPKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLK 132
+D RL ++ Q P F S + V G P G +I +L
Sbjct: 74 AA--IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALA---------VNPEVILMDEPCSALDP 183
A V D + LSGG+ RV AR LA P +L+DEP +ALD
Sbjct: 132 LAGATALVG----RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD- 186
Query: 184 IATASVEELIHELRE-----SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238
A L+ +R +L ++ + H AAR + R AM G +V
Sbjct: 187 --LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG------- 237
Query: 239 APSDQRTQDYIMGRFG 254
AP+D T +I +G
Sbjct: 238 APADVLTPAHIARCYG 253
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 71.7 bits (176), Expect = 2e-13
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 16/224 (7%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRA-RVGMVFQ 94
A+IG +G GKST + L M E GE+++D + R+ R+ M+FQ
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTS-----GELLIDD---HPLHFGDYSYRSQRIRMIFQ 94
Query: 95 RPNPF--PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLS 152
P+ P+ + P ++ + +L++ L D + +L+
Sbjct: 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP---DHASYYPHMLA 151
Query: 153 GGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTI--VIVTHSMQ 210
GQ+QR+ +ARAL + P+VI+ DE ++LD + + L+ EL+E I + VT +
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254
+S + + H G +VE T + +P + T+ I G FG
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFG 255
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 71.9 bits (177), Expect = 2e-13
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 31/222 (13%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQS 78
+AL DI+ V AL+G +G GKST L+ L+ + G I++DG+ + + S
Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSG-----NYQPDAGSILIDGQEMRFAS 72
Query: 79 SVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
+ L A V +++Q + P+ ++ +N+ G H G + + L
Sbjct: 73 TTAA--LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG------------IVNRRLLN 118
Query: 138 NEVKDRLFH-------DASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188
E +++L H D L LS GQ+Q V IA+ALA N VI DEP S+L
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 189 VEELIHELRESLTIVI-VTHSMQQAARVSQRAAMFHMGHLVE 229
+ +I ELR +++ V+H M++ + +F G V
Sbjct: 179 LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
Score = 48.0 bits (115), Expect = 2e-06
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS 208
LSGG QQ+ + R L+ + +VIL+DEP +D A + +I+EL V+ S
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 70.4 bits (172), Expect = 5e-13
Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81
L IN+ I ++G +G GKS+ L R+NE+ + GEII+DG NI + +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE-----GEIIIDGLNI--AKIG 1354
Query: 82 VVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141
+ LR ++ ++ Q P F S+ N L D+ V +L+ A L V
Sbjct: 1355 LHDLRFKITIIPQDPVLFSGSLRMN---------LDPFSQYSDEEVWWALELAHLKTFVS 1405
Query: 142 ---DRLFHDASL----LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
D+L H+ + LS GQ+Q VC+ARAL +++++DE +A+D ++ I
Sbjct: 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465
Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD---QRTQDYIMG 251
E T++ + H + + R + G + E F APS+ QR Y M
Sbjct: 1466 TQFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAE-------FGAPSNLLQQRGIFYSMA 1517
Query: 252 R 252
+
Sbjct: 1518 K 1518
Score = 61.5 bits (149), Expect = 2e-10
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
L I IP+ ++ A++G GCGKS+ L L + ++ G + + G Y
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-----GHVHMKGSVAY 703
Query: 77 ---QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
Q+ + LR + + + + + A P + L + D +I E +
Sbjct: 704 VPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS--GDRTEIGEKGVN- 760
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
LSGGQ+QRV +ARA+ N ++ L D+P SA+D A V + I
Sbjct: 761 -----------------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD----AHVGKHI 799
Query: 194 HE-------LRESLTIVIVTHSM 209
E + ++ T ++VTH +
Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGI 822
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 70.1 bits (172), Expect = 5e-13
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 34/204 (16%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
VSV +G++R L D++L++ + L+GP+G GKST +R V G +
Sbjct: 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVR------------VVLGLVA 55
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
D I ++ + R+G V Q+ ++ V R+ G K DI
Sbjct: 56 PDEGVIKRNG------KLRIGYVPQKLYLDT-TLPLTVNRFLRLRP-GTKKEDILP---- 103
Query: 130 SLKKASLFNEVKDRLFHDASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
+LK+ V+ DA + LSGG+ QRV +ARAL P+++++DEP +D
Sbjct: 104 ALKR------VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 188 SVEELIHELRESL--TIVIVTHSM 209
++ +LI +LR L +++V+H +
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 70.1 bits (172), Expect = 5e-13
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 29/203 (14%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQS 78
+AL ++NLK+ +S+ AL+G +G GKST L+CL + + +G I+ GK I ++S
Sbjct: 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-----SGSILFQGKEIDFKS 66
Query: 79 SVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLKKAS 135
S + L + MV Q N +S+ DN+ G P +DQ +M +
Sbjct: 67 SKEA--LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF------VDQ-DKMYRDTKA 117
Query: 136 LFNEV------KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
+F+E+ + ++ + LS Q Q + IA+A + N ++++MDEP S+L +
Sbjct: 118 IFDELDIDIDPRAKV----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 190 EELIHELRES-LTIVIVTHSMQQ 211
+I +L+E IV ++H M++
Sbjct: 174 FTIIRKLKERGCGIVYISHKMEE 196
Score = 49.7 bits (119), Expect = 8e-07
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209
LSGG QQ+V I R L PE++++DEP +D A + +LI EL ++ I+I++ M
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
Query: 210 QQAARVSQR 218
+ ++ R
Sbjct: 452 PELLGITDR 460
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 69.0 bits (169), Expect = 1e-12
Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 19/236 (8%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
G+ A+ D+N + ++G SG GKS L M N G +G+ I
Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL--MGLLAANGRIGGSATFNGREIL 84
Query: 77 Q-SSVDVVRLRA-RVGMVFQRP----NPFPKSIYDNVAYGPRIH-GLGNNKADIDQIVEM 129
++ +LRA ++ M+FQ P NP+ + + + + +H G+ +A E
Sbjct: 85 NLPEKELNKLRAEQISMIFQDPMTSLNPYMR-VGEQLMEVLMLHKGMSKAEA-----FEE 138
Query: 130 SLK--KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
S++ A E + R+ SGG +QRV IA AL P++++ DEP +ALD A
Sbjct: 139 SVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQA 198
Query: 188 SVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241
+ L++EL+ I+++TH + A + + + + G +E + +F PS
Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS 254
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 68.4 bits (168), Expect = 2e-12
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 20 RALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78
R LF ++ + L GP+G GK+T LR + + G I LDG +I
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDDP 69
Query: 79 SV--DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE-MSLKKAS 135
V L R M P ++ +N+ + LG + DI +E + L
Sbjct: 70 DVAEACHYLGHRNAM-----KPA-LTVAENLEFWAAF--LGGEELDIAAALEAVGL---- 117
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
+ F LS GQ++RV +AR L N + ++DEP +ALD A A ELI
Sbjct: 118 --APLAHLPFGY---LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172
Query: 196 -LRESLTIVIVTHS 208
L + ++ TH
Sbjct: 173 HLAQGGIVIAATHI 186
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 67.3 bits (165), Expect = 4e-12
Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 32/213 (15%)
Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
+NL++ + + +LIGP+G GK+T CL + G I+L G++I +
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEGLPGHQI- 77
Query: 85 LRARVGMV--FQRPNPFPK-SIYDN--VAYGPR-----IHGLGNNKA-------DIDQIV 127
AR+G+V FQ F + ++ +N VA + GL A +D+
Sbjct: 78 --ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAA 135
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
L++ L E +R A L+ GQQ+R+ IAR + PE++++DEP + L+P T
Sbjct: 136 TW-LERVGLL-EHANR---QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 188 SVEELIHELRES--LTIVIVTHSMQQAARVSQR 218
++ELI ELR +T++++ H M+ +S R
Sbjct: 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 66.0 bits (161), Expect = 1e-11
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 44/247 (17%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS-VDV 82
DI+ + + + G G G++ + CL +++ GEI L+GK+I S +D
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA-----GGEIRLNGKDISPRSPLDA 335
Query: 83 VRLRARVGMVF----QRPNPF-PK-SIYDNVAYGPRIH--------GLGNNKADI----D 124
V+ GM + +R N F P SI N+A + GL + + +
Sbjct: 336 VK----KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184
Q ++LK S+ + + LSGG QQ+V I++ L PEVI+ DEP +D
Sbjct: 392 QRELLALKCHSVNQNITE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443
Query: 185 ATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQ 243
A A + +++ +L + I++V+ + + V R A+F G L + T D
Sbjct: 444 AKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI------LTN-RDD 496
Query: 244 RTQDYIM 250
+++ IM
Sbjct: 497 MSEEEIM 503
Score = 60.2 bits (146), Expect = 5e-10
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
+G AL +NL + + AL+G +G GKST ++ L+ ++E G I ++ N
Sbjct: 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-----KGTITINNIN- 68
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYG--PRIHGLGNNKAD---IDQIVEM 129
Y + + +G+++Q + + ++ +N+ G G N D + M
Sbjct: 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM 128
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
L + L K L + LS +Q + IA+ L ++ +VI+MDEP S+L +
Sbjct: 129 MLLRVGL----KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 190 EELIHELR-ESLTIVIVTHSMQQAARVSQR 218
++++LR E IV ++H + + R+ R
Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDR 214
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 65.3 bits (160), Expect = 2e-11
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQR 95
L+GP+G GKST L + + +G I G+ + S+ ++ R RA + Q+
Sbjct: 27 LVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRAYLSQ--QQ 78
Query: 96 PNPFPKSIYDNVA-YGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGG 154
PF ++ + + P + ++++ E L + D+L + LSGG
Sbjct: 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEA-LG-------LDDKLGRSVNQLSGG 130
Query: 155 QQQRVCIARAL-----AVNPE--VILMDEPCSALDPIATASVEELIHEL-RESLTIVIVT 206
+ QRV +A + +NP ++L+DEP ++LD A+++ L+ EL ++ + +V+ +
Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190
Query: 207 HSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
H + R + R + G L+ D++ T
Sbjct: 191 HDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 63.6 bits (155), Expect = 4e-11
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 31/219 (14%)
Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
E+ L +INL +P S+ A++G +G GK++ + + GE+
Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM------------LGELPP------ 669
Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV---EMSLKK 133
+S VV +R V V Q F ++ DN+ +G +A ID ++ L
Sbjct: 670 RSDASVV-IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERA-IDVTALQHDLDLLP 727
Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE-- 191
E+ +R + +SGGQ+QRV +ARA+ N +V + D+P SALD V +
Sbjct: 728 GGDLTEIGERGVN----ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783
Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
+ ELR T V+VT+ + ++V R + H G + EE
Sbjct: 784 IKDELRGK-TRVLVTNQLHFLSQVD-RIILVHEGMIKEE 820
Score = 51.7 bits (124), Expect = 2e-07
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 29/193 (15%)
Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV 82
F+I+ P V ++G +G GKS+ L L R+ E + G I++DG +I S +
Sbjct: 1260 FEIS---PSEKV-GIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDI--SKFGL 1308
Query: 83 VRLRARVGMVFQRPNPFPKSIYDNV-AYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141
+ LR +G++ Q P F ++ N+ + +N AD+ + SL++A L + ++
Sbjct: 1309 MDLRKVLGIIPQAPVLFSGTVRFNLDPFNE------HNDADLWE----SLERAHLKDVIR 1358
Query: 142 DRLFH-DASLLSGG------QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
DA + G Q+Q + +ARAL +++++DE +A+D A +++ I
Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418
Query: 195 ELRESLTIVIVTH 207
E +S T++I+ H
Sbjct: 1419 EEFKSCTMLIIAH 1431
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 63.4 bits (155), Expect = 5e-11
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 59/214 (27%)
Query: 27 LKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD-GKNIYQSSVDVVRL 85
L I N L+G +G GKST ++ LN GE++LD G+ IY+ + V RL
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILN------------GEVLLDDGRIIYEQDLIVARL 71
Query: 86 RARVGMVFQRPNPFPK----SIYDNVAYGPRIHGLGNNKADIDQI-----VEMSLKKASL 136
+ Q P P+ ++YD VA G I I + S K +
Sbjct: 72 Q-------QDP---PRNVEGTVYDFVAEG--IEEQAEYLKRYHDISHLVETDPSEKNLNE 119
Query: 137 FNEVKDRLFH---------------------DASL--LSGGQQQRVCIARALAVNPEVIL 173
+++++L H DA+L LSGG ++ + RAL NP+V+L
Sbjct: 120 LAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLL 179
Query: 174 MDEPCSALDPIATASVEELIHELRESLTIVIVTH 207
+DEP + LD +E + + S I+ ++H
Sbjct: 180 LDEPTNHLDIETIEWLEGFLKTFQGS--IIFISH 211
Score = 47.3 bits (113), Expect = 4e-06
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 57/191 (29%)
Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY-QSSVDVV---RLRARVGM 91
ALIGP+GCGK+T L+ + G++ D I+ + ++V + RA +
Sbjct: 349 ALIGPNGCGKTTLLKLM------------LGQLQADSGRIHCGTKLEVAYFDQHRAEL-- 394
Query: 92 VFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDA--- 148
+P K++ DN+A G Q V ++ + + ++D LFH
Sbjct: 395 -----DP-EKTVMDNLAEG-------------KQEVMVNGRPRHVLGYLQDFLFHPKRAM 435
Query: 149 ---SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESL----- 200
LSGG++ R+ +AR ++++DEP + LD VE L EL E L
Sbjct: 436 TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD------VETL--ELLEELLDSYQ 487
Query: 201 -TIVIVTHSMQ 210
T+++V+H Q
Sbjct: 488 GTVLLVSHDRQ 498
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 63.3 bits (155), Expect = 6e-11
Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 49/214 (22%)
Query: 16 YGEKR-ALFDINLKIPQN-SVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD-G 72
YG L+ L IP+ VT ++GP+G GK+T ++ L +GE+I + G
Sbjct: 83 YGVNGFKLY--GLPIPKEGKVTGILGPNGIGKTTAVKIL------------SGELIPNLG 128
Query: 73 KNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDN---VAYGPRIHGLGNNKADIDQI--- 126
+ S D V L+ G Q N F K +Y+ V + P+ +D I
Sbjct: 129 DYEEEPSWDEV-LKRFRGTELQ--NYF-KKLYNGEIKVVHKPQY---------VDLIPKV 175
Query: 127 ----VEMSLKKA---SLFNEVKDRLF------HDASLLSGGQQQRVCIARALAVNPEVIL 173
V LKK +EV +RL D S LSGG+ QRV IA AL + +
Sbjct: 176 FKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF 235
Query: 174 MDEPCSALDPIATASVEELIHELRESLTIVIVTH 207
DEP S LD +V LI EL E +++V H
Sbjct: 236 FDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269
Score = 44.8 bits (107), Expect = 2e-05
Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 61/193 (31%)
Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88
I + V ++GP+G GK+TF + L G + D + ++
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLL------------AGVLKPDEGEVDPE----LK---- 401
Query: 89 VGMVFQRPNPFPKSIYDNVAYGP-RIHGLGNNKADIDQIVEMSLKKAS-------LFNEV 140
++Y P I K D D VE L+ + +E+
Sbjct: 402 ------------------ISYKPQYI------KPDYDGTVEDLLRSITDDLGSSYYKSEI 437
Query: 141 KDRL----FHDASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALD---PIATASVEE 191
L D ++ LSGG+ QRV IA L+ + ++ L+DEP + LD +A A
Sbjct: 438 IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497
Query: 192 LIHELRESLTIVI 204
I E RE+ +V+
Sbjct: 498 RIAEEREATALVV 510
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 63.1 bits (153), Expect = 8e-11
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
K L DINL+IP S+ A++G +G GK++ + + GE+ +
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----SHAET 672
Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV---EMSLKKA 134
SSV + R V V Q F ++ +N+ +G +A ID ++ L
Sbjct: 673 SSVVI---RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRA-IDVTALQHDLDLLPG 728
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELI 193
E+ +R + +SGGQ+QRV +ARA+ N ++ + D+P SALD +A + +
Sbjct: 729 RDLTEIGERGVN----ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784
Query: 194 HELRESLTIVIVTHSMQ 210
+ + T V+VT+ +
Sbjct: 785 KDELKGKTRVLVTNQLH 801
Score = 51.1 bits (122), Expect = 2e-07
Identities = 42/180 (23%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96
++G +G GKS+ L L R+ E + G I++D ++ + + LR + ++ Q P
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDV--AKFGLTDLRRVLSIIPQSP 1319
Query: 97 NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFH-DASLLSGG- 154
F ++ N+ +N AD+ + +L++A + + + F DA + GG
Sbjct: 1320 VLFSGTVRFNIDPFSE-----HNDADLWE----ALERAHIKDVIDRNPFGLDAEVSEGGE 1370
Query: 155 -----QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSM 209
Q+Q + +ARAL +++++DE +++D + ++ I E +S T++++ H +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 62.6 bits (152), Expect = 9e-11
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 38/220 (17%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY- 76
E+ L + + A++GPSG GKST L N + I FTG I+ + +
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLL---NALAGRIQGNNFTGTILANNRKPTK 136
Query: 77 ----------QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126
Q + L R +VF PKS+ I
Sbjct: 137 QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE----------KILVAESVI 186
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
E+ L K N + F +SGG+++RV IA + +NP ++++DEP S LD AT
Sbjct: 187 SELGLTKCE--NTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLD--AT 240
Query: 187 AS---VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFH 223
A+ V L ++ TIV H Q ++RV Q MF
Sbjct: 241 AAYRLVLTLGSLAQKGKTIVTSMH--QPSSRVYQ---MFD 275
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 62.2 bits (152), Expect = 1e-10
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 67/242 (27%)
Query: 4 IYKMISNKVSVCYGEKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62
IY M N+VS K+ + DI+L + ++G +G GKST LR + +D
Sbjct: 4 IYTM--NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM----AGVDK- 56
Query: 63 VFTGEIIL-DGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNK 120
F GE G +VG + Q P P K++ +NV G+ K
Sbjct: 57 EFNGEARPAPG--------------IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIK 97
Query: 121 ADIDQIVEMSLKKA-------SLFNE---VKDRLFH------------------------ 146
+D+ E+S K A +L E +++ +
Sbjct: 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157
Query: 147 DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE-SLTIVIV 205
D + LSGG+++RV + R L P+++L+DEP + LD SV L L+E T+V V
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLEQHLQEYPGTVVAV 214
Query: 206 TH 207
TH
Sbjct: 215 TH 216
Score = 57.6 bits (140), Expect = 3e-09
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 49/210 (23%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
+S +G+K + D++ K+P + +IGP+G GKST R + E D +G I
Sbjct: 326 ENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-EQPD----SGTIK 380
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
+ G+ + + VD ++R + PN K++++ ++ G I LG E+
Sbjct: 381 I-GETVKLAYVD----QSRDAL---DPN---KTVWEEISGGLDIIQLGK--------REV 421
Query: 130 -SLKKASLFNEVKDRLFHDA------SLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
S FN F + LSGG++ RV +A+ L V+L+DEP + LD
Sbjct: 422 PSRAYVGRFN------FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Query: 183 PIATASVEELIHELRESL-----TIVIVTH 207
VE L L E+L V+++H
Sbjct: 476 ------VETL-RALEEALLEFAGCAVVISH 498
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 62.1 bits (151), Expect = 1e-10
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 13/226 (5%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
+G +AL I+L++ L G +G GKST ++ L+ + + GEI G +
Sbjct: 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT---WDGEIYWSGSPL 67
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
S++ RA + ++ Q P+ S+ +N+ G I G A M L+
Sbjct: 68 KASNIRDTE-RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAY----NAMYLRAK 122
Query: 135 SLFNEVKDRLFHDA---SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
+L E++ + GGQQQ V IA+AL ++++DEP S+L T + +
Sbjct: 123 NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182
Query: 192 LIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236
+I +L + V ++H + + V + G V D M
Sbjct: 183 IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228
Score = 54.4 bits (131), Expect = 2e-08
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209
LSGG QQ+ +A+ L NP V+++DEP +D A + +LI++L +E + I++V+ +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 210 QQAARVSQRAAMFHMGHL 227
+ +S R + G L
Sbjct: 464 AEVLGLSDRVLVIGEGKL 481
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 60.8 bits (148), Expect = 3e-10
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 150 LLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR-ESLTIVIVTHS 208
LLSGG QQ+V IAR L P+V+++DEP +D A + +LI++ + E L+I++V+
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIM 250
M + +S R + H G + E FT +Q TQ+ +M
Sbjct: 455 MPEVLGMSDRILVMHEGRISGE------FTR--EQATQEKLM 488
Score = 57.7 bits (140), Expect = 3e-09
Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 34/206 (16%)
Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY--- 76
+AL L + V AL+G +G GKST ++ L + T D G I+ GK +
Sbjct: 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-YTRD----AGSILYLGKEVTFNG 72
Query: 77 -QSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRI-HGLG-------NNKADIDQI 126
+SS + A +G++ Q N P+ +I +N+ G + G +AD +
Sbjct: 73 PKSSQE-----AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-KLL 126
Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
++L+ +S D+L + LS G+QQ V IA+ L+ +VI+MDEP AL T
Sbjct: 127 ARLNLRFSS------DKLVGE---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
Query: 187 ASVEELIHELRES-LTIVIVTHSMQQ 211
S+ +I EL+ IV ++H +++
Sbjct: 178 ESLFRVIRELKSQGRGIVYISHRLKE 203
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 58.7 bits (142), Expect = 1e-09
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE--SLTIVIVTHS 208
L+ G+ Q+V IA ALA P +++ DEP +A++P A + L+ L + + TI++++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI--MGRFG 254
+Q ++ + + + + G VE + ++ T P TQ I + FG
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFG 266
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 56.2 bits (136), Expect = 7e-09
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 20 RALFDINLKIPQNSVTALI--GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
R LF L N+ AL GP+G GK+T LR L + +GE+ +G + +
Sbjct: 13 RMLF-EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-----SGEVRWNGTALAE 66
Query: 78 SSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136
+ R +G P P+ S +N+ + IHG + +E +L L
Sbjct: 67 QRDEPHRNILYLG---HLPGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGL 117
Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
+D LS GQQ+R+ +AR + ++DEP +ALD A V L L
Sbjct: 118 -TGFEDLPAAQ---LSAGQQRRLALARLWLSRAPLWILDEPTTALDK---AGVALLAGLL 170
Query: 197 RESL----TIVIVTH 207
R L +++ TH
Sbjct: 171 RAHLARGGIVLLTTH 185
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 56.2 bits (136), Expect = 8e-09
Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 47/226 (20%)
Query: 3 QIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62
Q+ + K L +++ + A++G SG GK+T + L +
Sbjct: 22 QLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK--GV 79
Query: 63 VFTGEIILDGKNI------------YQSSVDVVRLRARVGMVFQR----PNPFPKSIYDN 106
+G ++L+G I Q + + L R ++FQ P K
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE--- 136
Query: 107 VAYGPRIHGLGNNKADIDQIVE-MSLKKAS-----LFNEVKDRLFHDASLLSGGQQQRVC 160
+ +D++++ + L+K + + VK LSGG+++R+
Sbjct: 137 ------------KRERVDEVLQALGLRKCANTRIGVPGRVKG--------LSGGERKRLA 176
Query: 161 IARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVT 206
A L +P ++ DEP S LD SV +++ L + +I T
Sbjct: 177 FASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICT 222
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 56.1 bits (136), Expect = 9e-09
Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 41/230 (17%)
Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60
M I K +G +AL +++LK+ + +L G +G GKST ++ L
Sbjct: 8 MKNITK--------TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVL-------- 51
Query: 61 NC------VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRI 113
+ GEII +G+ + S++ RA + ++ Q + S+ +N+ G I
Sbjct: 52 -SGVYPHGTYEGEIIFEGEELQASNIRDTE-RAGIAIIHQELALVKELSVLENIFLGNEI 109
Query: 114 --HGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL----LSGGQQQRVCIARALAV 167
G+ + A M L+ L ++K L + + L GQQQ V IA+AL
Sbjct: 110 TPGGIMDYDA-------MYLRAQKLLAQLK--LDINPATPVGNLGLGQQQLVEIAKALNK 160
Query: 168 NPEVILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQQAARVS 216
++++DEP ++L TA + ++I +L+ + + ++H + + +S
Sbjct: 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAIS 210
Score = 51.9 bits (125), Expect = 1e-07
Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 32/182 (17%)
Query: 64 FTGEIILDGKNI-YQSSVDVVRL--------RARVGMVFQRPNPFPKSI----YDNVAYG 110
+ GEI +DGK + ++ + R R G+V K+I D G
Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMG--VGKNITLAALDRFTGG 373
Query: 111 PRIHGLGNNKADIDQIVE----MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALA 166
RI ++ A++ I+E + +K AS + LSGG QQ+ +A+ L
Sbjct: 374 SRI----DDAAELKTILESIQRLKVKTASPELAIAR--------LSGGNQQKAVLAKCLL 421
Query: 167 VNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMG 225
+NP+++++DEP +D A + +LI++L ++ + I++++ + + +S R + H G
Sbjct: 422 LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
Query: 226 HL 227
L
Sbjct: 482 KL 483
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 55.5 bits (135), Expect = 1e-08
Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 82/253 (32%)
Query: 1 MNQ-IYKMISNKVSVCYGEKRALF-DINL------KIPQNSVTALIGPSGCGKSTFLRCL 52
M Q IY M N+VS K+ + DI+L KI ++G +G GKST LR +
Sbjct: 2 MAQYIYTM--NRVSKVVPPKKQILKDISLSFFPGAKI------GVLGLNGAGKSTLLRIM 53
Query: 53 NRMNETIDNCVFTGEIIL-DGKNIYQSSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAY 109
+D F GE G +VG + Q P +P K++ +NV
Sbjct: 54 ----AGVDK-EFEGEARPAPG--------------IKVGYLPQEPQLDP-EKTVRENV-- 91
Query: 110 GPRIHGLGNNKADIDQIVEMSLKKA-------SLFNE---VKDRLFH------------- 146
G+ KA +D+ E+ A +L E +++ +
Sbjct: 92 ---EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148
Query: 147 -DA----------SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
DA + LSGG+++RV + R L P+++L+DEP + LD SV L
Sbjct: 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAWLEQF 205
Query: 196 LRE-SLTIVIVTH 207
L + T+V VTH
Sbjct: 206 LHDYPGTVVAVTH 218
Score = 49.0 bits (118), Expect = 1e-06
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 39/181 (21%)
Query: 10 NKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
+S +G+ R L D ++ +P + +IGP+G GKST + + E D +G I
Sbjct: 328 ENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-EQPD----SGTI 381
Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128
+ G+ + + VD ++R + PN K++++ ++ G I +GN E
Sbjct: 382 KI-GETVKLAYVD----QSRDAL---DPN---KTVWEEISGGLDIIKVGN--------RE 422
Query: 129 M-SLKKASLFNEVKDRLFH--D----ASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181
+ S FN F D +LSGG++ R+ +A+ L V+L+DEP + L
Sbjct: 423 IPSRAYVGRFN------FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476
Query: 182 D 182
D
Sbjct: 477 D 477
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 55.3 bits (133), Expect = 1e-08
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 44/216 (20%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII-LDGKNIYQSSV 80
L +I+ K+ + + A+ G +G GKS+ L + GE+ +GK
Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLM------------MIMGELEPSEGK------- 482
Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134
++ R+ Q P +I DN+ +G D+ S+ KA
Sbjct: 483 --IKHSGRISFSPQTSWIMPGTIKDNIIFG----------LSYDEYRYTSVIKACQLEED 530
Query: 135 -SLFNEVKDR--LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV-E 190
+LF E KD+ L LSGGQ+ R+ +ARA+ + ++ L+D P + LD + + E
Sbjct: 531 IALFPE-KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGH 226
+ +L + T ++VT ++ + + + + H G
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGV 624
Score = 54.9 bits (132), Expect = 2e-08
Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 6 KMISNKVSVCYGE--KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
+M ++ Y E + L D++ + L+G +G GKST L L R+ T
Sbjct: 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST----- 1271
Query: 64 FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADI 123
GEI +DG + +SV + R G++ Q+ F + N+ + + +I
Sbjct: 1272 -EGEIQIDG--VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW-----SDEEI 1323
Query: 124 DQIV-EMSLKKASLFNEVKDRL---FHDAS-LLSGGQQQRVCIARALAVNPEVILMDEPC 178
++ E+ LK S+ + D+L D +LS G +Q +C+AR++ +++L+DEP
Sbjct: 1324 WKVAEEVGLK--SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381
Query: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQ 210
+ LDP+ + + + + + T+++ H ++
Sbjct: 1382 AHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 53.5 bits (129), Expect = 5e-08
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS-M 209
LSGG QQ+V IA+ L +P+++++DEP +D A + +LI + V+ S +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463
Query: 210 QQAARVSQRAAMFHMGHLVEE 230
++ +++ R + H G +
Sbjct: 464 EEIEQMADRVLVMHQGEISGA 484
Score = 48.5 bits (116), Expect = 1e-06
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 29/238 (12%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
+S Y L I+ + V AL+G +G GKST ++ + + D +G + +
Sbjct: 17 ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-VPPD----SGTLEIG 71
Query: 72 GKNIYQSSVDVVRLRARVG--MVFQRPNPFPK-SIYDNVAYG-PRIHGLGNNKADIDQIV 127
G + + ++G +V Q P FP S+ +N+ +G P+ + +
Sbjct: 72 GNPCARLTPA---KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187
L S A L +Q V I R L + ++++DEP ++L P T
Sbjct: 129 GCQLDLDSS-----------AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 188 SVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLV-----EEDDTDKMFTA 239
+ I EL + + IV ++H + + +++ R ++ G + + TD + A
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQA 235
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 51.3 bits (123), Expect = 2e-07
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96
++G +G GKST L RM E V GEI ++G+ I + + LR + M+ Q P
Sbjct: 1341 IVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREI--GAYGLRELRRQFSMIPQDP 1393
Query: 97 NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQ 156
F ++ NV P + ++V + + AS + R+ S S GQ+
Sbjct: 1394 VLFDGTVRQNV--DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451
Query: 157 QRVCIARA-LAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARV 215
Q +C+ARA L ILMDE + +DP ++ + + T++ + H + A+
Sbjct: 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQY 1511
Query: 216 SQRAAMFH 223
+ M H
Sbjct: 1512 DKIIVMDH 1519
Score = 48.6 bits (116), Expect = 2e-06
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIHELRESLTIVIVTHSM 209
LSGGQ+ RV +ARA+ N +V L+D+P SALD + VEE T V+ TH +
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 210 QQAARVSQRAAM 221
R A+
Sbjct: 843 HVVPRADYVVAL 854
Score = 36.3 bits (84), Expect = 0.008
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL 52
K L D+++ +P+ +T ++G +G GKST L+ L
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL 706
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 50.3 bits (120), Expect = 4e-07
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 35/223 (15%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQ 77
AL I+L+I Q + ++G +GCGKST + L E GEI+LDG +
Sbjct: 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE--------GEILLDGAAVSA 408
Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137
S D R + F D + I A +D + L++ +
Sbjct: 409 DSRDDYR------------DLFSAIFADFHLFDDLIGPDEGEHASLDN-AQQYLQRLEIA 455
Query: 138 NEVK--DRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIH 194
++VK D F + LS GQQ+R+ + A + ++L DE + DP EEL+
Sbjct: 456 DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 195 EL-RESLTIVIVTHS---MQQAARVSQRAAMFHMGHLVEEDDT 233
+L R+ TI+I++H + A ++ + AA G +V++ +
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAA----GCIVKDTEC 554
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 50.2 bits (120), Expect = 5e-07
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEII 69
VSV +K L +NL++ V A++GP+G GKST L R + + G +
Sbjct: 8 HVSV--EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG----GTVE 61
Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFP---KSIYDNVAYGPRIHGLGNNKADIDQI 126
GK++ + S + R + M FQ P P + A G D
Sbjct: 62 FKGKDLLELSPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 127 VEMSLKKASLFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185
++ +K +L +D L ++ SGG+++R I + + PE+ ++DE S LD A
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 186 TASVEELIHELR-ESLTIVIVTH 207
V + ++ LR + +IVTH
Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTH 203
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 47.5 bits (114), Expect = 3e-06
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 148 ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT---IVI 204
LS GQQ+RV +AR + ++DEP +A+D V L L + +VI
Sbjct: 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID---KQGVARLEALLAQHAEQGGMVI 183
Query: 205 VT--HSMQQAA 213
+T + A+
Sbjct: 184 LTTHQDLPVAS 194
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 47.4 bits (113), Expect = 3e-06
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83
++ ++P + + GP+GCGKS+ R L + V+ G + K
Sbjct: 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPAKG--------- 515
Query: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL---GNNKADIDQIVEMS-----LKKAS 135
++ V QRP ++ D + Y + G + D++QI++ L++
Sbjct: 516 ----KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREG 571
Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
++ V+D + +LSGG++QR+ +AR P+ ++DE SA+ VE ++
Sbjct: 572 GWSAVQDWM----DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYR 623
Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFH 223
L I + + VS R +++
Sbjct: 624 LCREFGITLFS--------VSHRKSLWK 643
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 46.9 bits (112), Expect = 4e-06
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
V+ Y + ++ INL I + + LIG +G GKST L + + +GEI+L
Sbjct: 328 VTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILL 382
Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130
DGK + ++ R VF + F + + GP K +VE
Sbjct: 383 DGKPV--TAEQPEDYRKLFSAVFTDFHLFDQLL------GPE------GKPANPALVEKW 428
Query: 131 LKKASLFN--EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATA 187
L++ + + E++D + LS GQ++R+ + ALA +++L+DE + DP
Sbjct: 429 LERLKMAHKLELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487
Query: 188 SVEELIHELRES-LTIVIVTH 207
+ L+ L+E TI ++H
Sbjct: 488 FYQVLLPLLQEMGKTIFAISH 508
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 47.0 bits (112), Expect = 5e-06
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 47/207 (22%)
Query: 14 VCY-----GEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGE 67
+ Y EKR + + ++ + ++TAL+G SG GK+T L L E + V TG
Sbjct: 765 LTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA---ERVTTGVITGG 821
Query: 68 IILDGKNIYQSSV----------DV------VRLRARVGMVFQRPNPFPKS-IYDNVAYG 110
L SS D+ VR R ++P KS + V
Sbjct: 822 DRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE- 880
Query: 111 PRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170
+ +++EM ++ L+ Q++R+ I L P+
Sbjct: 881 ------------VIKLLEMESYADAVVGVP-------GEGLNVEQRKRLTIGVELVAKPK 921
Query: 171 VIL-MDEPCSALDPIATASVEELIHEL 196
++L +DEP S LD S+ +L+ +L
Sbjct: 922 LLLFLDEPTSGLDSQTAWSICKLMRKL 948
Score = 36.6 bits (85), Expect = 0.006
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVT 206
SGG+++RV IA A ++ D LD ATA E I L+ S I+ T
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDS-ATAL--EFIRALKTSANILDTT 262
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 46.2 bits (110), Expect = 8e-06
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196
D FH LS GQQ+ I RAL +P ++++DEP LDP+ V + L
Sbjct: 392 KRTADAPFHS---LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI 448
Query: 197 RESLT-IVIVTHSMQQA 212
E T ++ V+H + A
Sbjct: 449 SEGETQLLFVSHHAEDA 465
Score = 38.8 bits (91), Expect = 0.001
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 57/203 (28%)
Query: 26 NLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL-DGKNIYQSSVD-VV 83
+L + A +G +G GKS R L GE+ L G+ QS +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL------------AGELPLLSGE--RQSQFSHIT 68
Query: 84 RL-----RARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
RL + V +QR N P G A+I Q +
Sbjct: 69 RLSFEQLQKLVSDEWQRNN--------TDMLSPGEDDTGRTTAEIIQ------------D 108
Query: 139 EVKDR--------LFHDASLL-------SGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
EVKD F +LL S G+ ++ + +AL P+++++DEP LD
Sbjct: 109 EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDV 168
Query: 184 IATASVEELIHEL-RESLTIVIV 205
+ + EL+ L + +T+V+V
Sbjct: 169 ASRQQLAELLASLHQSGITLVLV 191
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFL 49
N V Y ++ L +++ ++ ++GP+G GKST L
Sbjct: 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL 303
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 44.1 bits (104), Expect = 3e-05
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
LS Q++R+ IA L NP +I MDEP S LD A A V
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058
Score = 29.4 bits (66), Expect = 0.82
Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 52/231 (22%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEIILDGKNI----- 75
L D + I + +T L+GP GK+T L L +++ ++ +GEI +G +
Sbjct: 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLK---VSGEITYNGYRLNEFVP 237
Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGN------------NKADI 123
++S + + VG++ ++ + + + R G+G A I
Sbjct: 238 RKTSAYISQNDVHVGVM---------TVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288
Query: 124 DQIVEMSL-KKASLFNEVKDRLFHDASL--------------------LSGGQQQRVCIA 162
E+ L KA+ VK L D +L +SGGQ++RV
Sbjct: 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG 348
Query: 163 RALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAA 213
+ + + MDE + LD T + + + ++ LT V S+ Q A
Sbjct: 349 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH-LTEATVLMSLLQPA 398
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 42.9 bits (101), Expect = 8e-05
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 30/217 (13%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
AL DI+LK + V L+G +G GKST N + ++ V G++ +G+ V
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLS---NIIGGSLSPTV--GKVDRNGE------V 87
Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNN--KADIDQIVEMSLKKASLFN 138
V+ + A G+ Q +N+ + G KA +I+E F+
Sbjct: 88 SVIAISA--GLSGQLTG------IENIEFKMLCMGFKRKEIKAMTPKIIE--------FS 131
Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
E+ + ++ S G + ++ + + VNP+++++DE S D + I+E +E
Sbjct: 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191
Query: 199 S-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234
TI V+H++ Q + + A G L + + D
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS 208
SGG + R+ +ARAL + P+++L+DEP + LD A +E + L+ T ++V+H+
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHA 400
Score = 39.5 bits (92), Expect = 8e-04
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196
LSGGQ+ RV A+ P ++L+DEP + LD A VE LI L
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGL 670
Score = 30.2 bits (68), Expect = 0.49
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64
++N I +S A++GP+G GKST L+ ++ + VF
Sbjct: 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 42.6 bits (100), Expect = 1e-04
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQ 210
S G + R+ A ++ +NP+++++DE S D T + ++E +E TI ++HS+
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFT 238
Q +A H G + E D ++
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVD 232
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 42.2 bits (99), Expect = 1e-04
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 30/197 (15%)
Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75
Y ++ L I+ +P + L G +G GK+T L+ + + GEI+ + ++I
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-----KGEILFERQSI 65
Query: 76 ------YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
YQ + V R+ + NP+ ++ +N Y IH I ++
Sbjct: 66 KKDLCTYQKQLCFVGHRSGI-------NPY-LTLRENCLYD--IH-FSPGAVGITELC-- 112
Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
LF ++ + + LLS GQ+++V + R ++ L+DEP ALD ++ ++
Sbjct: 113 -----RLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
Query: 190 EELIHELRESLTIVIVT 206
I E R V++T
Sbjct: 167 ITKIQEHRAKGGAVLLT 183
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.8 bits (93), Expect = 7e-04
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 151 LSGGQQQRVCIARALAVNPEVI--LMDEPCSALDPIATASVEELIHELR-ESLTIVIVTH 207
LSGG+Q+R +A+ L I ++DEP L P T + +I +LR + T+++V H
Sbjct: 477 LSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH 536
Query: 208 SMQQ---AARV---SQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
Q A R+ A +F G V + + + F A SD T Y+
Sbjct: 537 DEQMISLADRIIDIGPGAGIF--GGEVLFNGSPREFLAKSDSLTAKYL 582
Score = 32.5 bits (74), Expect = 0.10
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 151 LSGGQQQRVCIARALAVNPE--VILMDEPCSALDPIATASVEELIHELRESLTIVIVT-- 206
LS G+ R+ +A+ ++ N + L+++P S L P ++ +LI EL + VI T
Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDR 1447
Query: 207 -HSMQQAA 213
S+ + A
Sbjct: 1448 SGSLAEHA 1455
Score = 30.6 bits (69), Expect = 0.42
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 25 INLKIPQNSVTALIGPSGCGKSTFL 49
I+L +P+N++TA+ GPS GK + +
Sbjct: 954 IDLSLPRNALTAVTGPSASGKHSLV 978
Score = 27.5 bits (61), Expect = 3.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
+++ K L D+ + +P +T + G SG GKS+ + N+T+ V
Sbjct: 601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLI------NDTLVPAV 646
Score = 26.7 bits (59), Expect = 5.4
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 SLLSGGQQQRVCIARALAVNPE---VILMDEPCSALDPIATASVEELIHEL-RESLTIVI 204
S LS ++ + IA+ L + P+ + L+DE ++LD +++ + L +++
Sbjct: 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757
Query: 205 VTHSMQ 210
+ H
Sbjct: 1758 IDHDPA 1763
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 39.1 bits (92), Expect = 0.001
Identities = 22/51 (43%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Query: 158 RVCIARALAVNPEVILMDEPCSALDPIATAS-VEELIHELRESLTIVIVTH 207
RV +A+AL NP+++L+DEP + LD I T +E++++E R S T++I++H
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD-INTIRWLEDVLNE-RNS-TMIIISH 210
Score = 36.0 bits (84), Expect = 0.009
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 18 EKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCL 52
+ LF ++NL + A+IG +G GK+T LR L
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTL 365
Score = 33.7 bits (78), Expect = 0.046
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 7 MIS-NKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCL 52
M+S +++ +G K LF+ I++K + LIG +GCGKSTF++ L
Sbjct: 1 MLSTANITMQFGAK-PLFENISVKFGGGNRYGLIGANGCGKSTFMKIL 47
Score = 31.0 bits (71), Expect = 0.33
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALD 182
LSGG++ R+ + + P V++MDEP + +D
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 37.5 bits (87), Expect = 0.004
Identities = 56/240 (23%), Positives = 90/240 (37%), Gaps = 76/240 (31%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96
L+G +GCGKST L L EI DG + ++ V Q
Sbjct: 32 LVGKNGCGKSTLLALLK------------NEISADGGSYTFPG------NWQLAWVNQET 73
Query: 97 NPFPKSIYDNVAYGPR-----------------------IHGLGNNKADIDQIVEMSLKK 133
P+ + V G R IHG K D + +
Sbjct: 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHG----KLDAIDAWTIRSRA 129
Query: 134 ASLFNEV---KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190
ASL + + ++L S SGG + R+ +A+AL +++L+DEP + LD A +E
Sbjct: 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE 189
Query: 191 E----------LIHELRESLTIVI--VTH----------------SMQQAARVSQRAAMF 222
+ LI R+ L ++ + H +Q+A R++Q+ AM+
Sbjct: 190 KWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMY 249
Score = 35.5 bits (82), Expect = 0.012
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 2 NQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL 52
N + KM KVS YG++ L I L + S L+G +G GKST ++ L
Sbjct: 310 NPLLKM--EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL 358
Score = 29.4 bits (66), Expect = 0.85
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 20/65 (30%)
Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT---------I 202
SGG++ R+ +A + P ++L+DEP + LD ++R++LT +
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-----------LDMRQALTEALIDFEGAL 480
Query: 203 VIVTH 207
V+V+H
Sbjct: 481 VVVSH 485
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 37.2 bits (86), Expect = 0.005
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEIILDGKNIY 76
E++ LFD+++ +++T + G +GCGKS+ LR + M + NIY
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-------------SGNIY 58
Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK--ADIDQIVEMSLKKA 134
+ ++ + P+ I N+ + N K ++I E +L A
Sbjct: 59 YKNCNINNI----------AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE-TLYAA 107
Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176
+ ++ D L LS G Q+ V IAR +A ++ L+DE
Sbjct: 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 35.0 bits (80), Expect = 0.019
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 31 QNSVTALIGPSGCGKSTFLRCL 52
V ++GP G GK+T R L
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL 22
Score = 34.7 bits (79), Expect = 0.025
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH-------ELRESLTIV 203
SG + R+ +A A + P+V+++DE S LD A + L + ++LT++
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 204 IVTH 207
+ T+
Sbjct: 121 LTTN 124
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 33.8 bits (78), Expect = 0.042
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 29/112 (25%)
Query: 123 IDQIVEMSLKKASLFNE------VKDRLFHDASL-----------LSGGQQQRVCIARAL 165
I +++M++++A F E K + D L LSGG+ QR+ +A+ L
Sbjct: 784 IADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 843
Query: 166 ---AVNPEVILMDEPCSALDPIATASVEELIHELRESL-----TIVIVTHSM 209
+ + ++DEP + L +++L+ L + L T+V++ H++
Sbjct: 844 SKRSTGRTLYILDEPTTGLH---FDDIKKLLEVL-QRLVDQGNTVVVIEHNL 891
Score = 33.5 bits (77), Expect = 0.063
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFL 49
L +I + IP T + G SG GKST +
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLI 650
Score = 29.2 bits (66), Expect = 1.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKST 47
L +I+++IP++ + + G SG GKS+
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSS 37
Score = 29.2 bits (66), Expect = 1.2
Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 112 RIHGLGNNKADIDQIVEMSLKKASLF------------------NEVKDRLF-------- 145
++ G I + E+S+++A F E+K+RL
Sbjct: 423 KVGGK-----SIADVSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLGFLIDVGLD 477
Query: 146 -----HDASLLSGGQQQRVCIARALAVNPEVIL--MDEPCSALDPIATASVEELIHELRE 198
A LSGG+ QR+ +A + +L +DEP L + + LR+
Sbjct: 478 YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD 537
Query: 199 SLTIVIVTHSMQQAARVSQR------AAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252
VIV ++ R + A H G +V T + A D T Y+ G+
Sbjct: 538 LGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVAS-GTPEEILANPDSLTGQYLSGK 596
Query: 253 F 253
Sbjct: 597 K 597
>gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family.
Members of this protein family are archaeal
single-domain KaiC_related proteins, homologous to the
Cyanobacterial circadian clock cycle protein KaiC, an
autokinase/autophosphorylase that has two copies of the
domain.
Length = 229
Score = 33.2 bits (76), Expect = 0.062
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG-KNIY----QSSVDVV 83
IP+ A+ G G GK+ F CL+ F + + DG IY +S ++
Sbjct: 17 IPRGFFVAVTGEPGTGKTIF--CLH----------FAYKGLRDGDPVIYVTTEESRESII 64
Query: 84 RLRARVGMVFQR 95
R A+ GM F++
Sbjct: 65 RQAAQFGMDFEK 76
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 32.5 bits (74), Expect = 0.094
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%)
Query: 36 ALI--GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVF 93
AL+ G +G GK+T LR L + V +G+I +DGK + D R A +G +
Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTA--TRGDRSRFMAYLGHL- 90
Query: 94 QRPNPFPK---SIYDNVAYGPRIHGL------GNNKADIDQIVEMSLKKASLFNEVKDRL 144
P K S +N+ + +HG G+ A IV ++ + +L +
Sbjct: 91 ----PGLKADLSTLENLHFLCGLHGRRAKQMPGSALA----IVGLAGYEDTLVRQ----- 137
Query: 145 FHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH-ELRESLTIV 203
LS GQ++R+ +AR + L+DEP + LD V +I LR +
Sbjct: 138 ------LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAAL 191
Query: 204 IVTHSMQQAARVSQRAAMFHMG 225
+ TH A V R M +
Sbjct: 192 VTTHGAYAAPPVRTR--MLTLE 211
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.8 bits (72), Expect = 0.18
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 151 LSGGQQQ------RVCIARALAVNPEVILMDEPCSALDPIATASVEELI-HELRESLTI- 202
LSGG++ RV +A+ L + +++MDEP + LD +++++I + L++S I
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 203 --VIVTH--SMQQAARVS 216
++++H + A V+
Sbjct: 862 QVIMISHHRELLSVADVA 879
>gnl|CDD|148381 pfam06745, KaiC, KaiC. This family represents a conserved region
within bacterial and archaeal proteins, most of which
are hypothetical. More than one copy is sometimes found
in each protein. This family includes KaiC, which is
one of the Kai proteins among which direct
protein-protein association may be a critical process
in the generation of circadian rhythms in
cyanobacteria.
Length = 231
Score = 31.1 bits (71), Expect = 0.31
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 29 IPQNSVTALIGPSGCGKSTF 48
IP+ V + G G GK+ F
Sbjct: 16 IPEGRVVLITGGPGTGKTIF 35
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.8 bits (71), Expect = 0.40
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET 58
+++++IP T + G SG GKST +NET
Sbjct: 627 NVDVEIPLGKFTCVTGVSGSGKSTL------INET 655
Score = 30.4 bits (70), Expect = 0.40
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKST 47
L +I+L IP++ + G SG GKS+
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSS 41
Score = 28.5 bits (65), Expect = 2.0
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 31/75 (41%)
Query: 119 NKADIDQIVEMSLKKASLF------------------NEVKDRLF-------------HD 147
+I ++ E+S+ +A F E+++RL
Sbjct: 427 GGKNIGEVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDVGLDYLTLSRS 486
Query: 148 ASLLSGGQQQRVCIA 162
A LSGG+ QR+ +A
Sbjct: 487 AGTLSGGEAQRIRLA 501
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle.
Length = 1179
Score = 30.0 bits (68), Expect = 0.61
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 31 QNSVTALIGPSGCGKS 46
+T ++GP+GCGKS
Sbjct: 22 DKGITGIVGPNGCGKS 37
>gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation.
Length = 270
Score = 30.0 bits (68), Expect = 0.67
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 29 IPQNSV--TALIGPSGCGKSTFLRCLNRM 55
+ N V T +I P CGK+T LR L R+
Sbjct: 106 VRNNRVLNTLIISPPQCGKTTLLRDLARI 134
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 29.9 bits (67), Expect = 0.67
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 147 DASLLSGGQQQRVCIARALAV----------NPEVILMDEPCSALDPIATASVEELIHEL 196
++ LSGG+ ++ ALA+ + + +DE +LD + ++ +
Sbjct: 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006
Query: 197 RE-SLTIVIVTHSMQQAARVSQR 218
RE S I I++H + R+ R
Sbjct: 1007 REGSKMIGIISHVPEFRERIPHR 1029
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 29.8 bits (67), Expect = 0.68
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 11/39 (28%)
Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFL-----RCLNR 54
AL Q V AL+GP+G GK+T RC+ R
Sbjct: 180 ALLA------QGGVLALVGPTGVGKTTTTAKLAARCVAR 212
>gnl|CDD|128431 smart00126, IL6, Interleukin-6 homologues. Family includes
granulocyte colony-stimulating factor (G-CSF) and
myelomonocytic growth factor (MGF). IL-6 is also known
as B-cell stimulatory factor 2.
Length = 154
Score = 29.7 bits (67), Expect = 0.76
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGP-SGCGKSTFLR--CLNRMNETID 60
+ K + N+ S+C + AL + NLK+P+ + GC +S F + CL + I
Sbjct: 11 LRKELCNRFSLCENSEEALAENNLKLPK------MNEKDGCFQSGFNQEICLVK----IT 60
Query: 61 NCVFTGEIILDG-KNIYQSSVDVVR 84
+ ++ L+ +N + + + V
Sbjct: 61 AGLLEYQVYLEYLQNEFPENKENVD 85
>gnl|CDD|177982 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 29.8 bits (67), Expect = 0.78
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 34 VTALIGPSGCGKSTFLR 50
V L SGCGKSTF+R
Sbjct: 51 VIGLAADSGCGKSTFMR 67
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 29.6 bits (67), Expect = 0.83
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 31 QNSVTALIGPSGCGKSTFLRCL 52
+N +T + GPSG GKS+ + L
Sbjct: 171 RNKITVVAGPSGVGKSSLINRL 192
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.6 bits (67), Expect = 0.86
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 36 ALIGPSGCGKSTFLR 50
+ G SGCGK+TFLR
Sbjct: 12 GVAGDSGCGKTTFLR 26
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 29.2 bits (66), Expect = 0.97
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 10 NKVSVCYGEKRALFDINLKIPQNSV---TALIGPSGCGKSTFL 49
+++ + F N + V T + GP+G GK+T L
Sbjct: 409 PALTLLKTQSGTPFYFNFHVRDAKVLGHTLIFGPTGSGKTTLL 451
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 29.0 bits (66), Expect = 1.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 31 QNSVTALIGPSGCGKSTFL 49
VT L G SG GKST L
Sbjct: 163 AGKVTVLAGQSGVGKSTLL 181
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 29.1 bits (66), Expect = 1.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 37 LIGPSGCGKSTFLRCLN 53
LIG SGCGK+T + LN
Sbjct: 6 LIGRSGCGKTTLTQALN 22
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 29.1 bits (66), Expect = 1.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 36 ALIGPSGCGKST 47
AL+G SG GKST
Sbjct: 199 ALLGSSGVGKST 210
>gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 28.6 bits (65), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 37 LIGPSGCGKSTFL-RCLNRM 55
LIGP+G GK T L + L R+
Sbjct: 113 LIGPTGSGK-TLLAQTLARI 131
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 28.6 bits (64), Expect = 1.7
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 183 PIATASVEELIHELRESLTIVIVTHSM------QQAARVSQRAAMF--HMGHLVEE 230
P+AT S E L L+ L I S AA+ ++A F GH V E
Sbjct: 234 PLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQGHEVVE 289
>gnl|CDD|130674 TIGR01613, primase_Cterm, phage/plasmid primase, P4 family,
C-terminal domain. This model represents a clade within
a larger family of proteins from viruses of bacteria and
animals. Members of this family are found in phage and
plasmids of bacteria and archaea only. The model
describes a domain of about 300 residues, found
generally toward the protein C-terminus.
Length = 304
Score = 28.5 bits (64), Expect = 1.8
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 12/51 (23%)
Query: 37 LIGPSGCGKSTFLRCLNRM----NETIDNCVF--------TGEIILDGKNI 75
L G G GKSTF L+ + T + G L+GK
Sbjct: 81 LYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHRFGLARLEGKRA 131
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 637
Score = 28.4 bits (63), Expect = 2.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 37 LIGPSGCGKSTFLRCLNR 54
+ GPSGCGKST ++ L++
Sbjct: 115 ITGPSGCGKSTTIKILSK 132
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1311
Score = 28.1 bits (62), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 35 TALIGPSGCGKSTFLRCLN 53
T L+GP+G GK+T + CL
Sbjct: 31 TILVGPNGAGKTTIIECLK 49
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 28.1 bits (63), Expect = 2.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 37 LIGPSGCGKSTFLR 50
+IGP G GK+T L+
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|148113 pfam06307, Herpes_IR6, Herpesvirus IR6 protein. This family
consists of several Herpesvirus IR6 proteins. The
equine herpesvirus 1 (EHV-1) IR6 protein forms typical
rod-like structures in infected cells, influences virus
growth at elevated temperatures, and determines the
virulence of EHV-1 Rac strains.
Length = 214
Score = 28.0 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 30 PQNSVTALIGPSGC--GKSTFLRCLNRMNE 57
+ AL P G G+S F RC MNE
Sbjct: 1 ASAARKALFNPDGGMLGRSYFRRCREEMNE 30
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 27.7 bits (63), Expect = 2.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 39 GPSGCGKSTFLRCL 52
GPSG GKST ++ L
Sbjct: 12 GPSGAGKSTLVKAL 25
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 27.6 bits (61), Expect = 2.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 29 IPQNSVTALIGPSGCGKST 47
I Q V ALIGP+G GK+T
Sbjct: 188 IEQGGVYALIGPTGVGKTT 206
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 27.6 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 37 LIGPSGCGKSTFLRCLNR 54
L+GP G GKS+ + CL R
Sbjct: 83 LLGPVGGGKSSLVECLKR 100
>gnl|CDD|133906 PHA00490, PHA00490, terminal protein.
Length = 266
Score = 27.6 bits (61), Expect = 3.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 114 HGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQ 157
+G+ +KA ID+I + + + +E+ DR F+D ++SGG+ Q
Sbjct: 82 YGVVASKAKIDEIESNTKEAQRVVDEILDR-FNDKEVISGGKSQ 124
>gnl|CDD|183591 PRK12555, PRK12555, chemotaxis-specific methylesterase;
Provisional.
Length = 337
Score = 27.5 bits (62), Expect = 3.2
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 161 IARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT-IVIVTHSMQQAARVSQRA 219
+ R A P+VILMD +D VE + E I+IVT ++ A A
Sbjct: 39 VERCAAQPPDVILMDLEMPRMD-----GVEATRRIMAERPCPILIVTSLTERNASRVFEA 93
Query: 220 AMFHMGH 226
MG
Sbjct: 94 ----MGA 96
>gnl|CDD|177581 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 828
Score = 27.6 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 37 LI-GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77
LI G +G GKST ++ L NE +D CV TG + +N+
Sbjct: 75 LITGTAGAGKSTSIQTL---NENLD-CVITGATRVAAQNLSA 112
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 37 LIGPSGCGKST 47
LIG G GKST
Sbjct: 9 LIGFMGAGKST 19
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 27.4 bits (61), Expect = 3.6
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 28 KIPQNSVTALI-GPSGCGKSTFLRCL 52
+T LI G SG GK+T L
Sbjct: 10 LCGGGMITVLIDGRSGSGKTTLAGAL 35
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 27.3 bits (61), Expect = 3.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
L+GP G GKS R+ + N
Sbjct: 4 LVGPPGTGKSELAE---RLAAALSNRPVF 29
>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family.
This model represents a rather narrowly distributed
archaeal protein family in which members have a single
copy of the KaiC domain. This stands in contrast to the
circadian clock protein KaiC itself, with two copies of
the domain. Members are expected to have weak ATPase
activity, by homology to the
autokinase/autophosphorylase KaiC itself.
Length = 224
Score = 27.4 bits (61), Expect = 3.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 29 IPQNSVTALIGPSGCGKSTF 48
P+ V +IG G GK+TF
Sbjct: 13 FPEGHVIVVIGEYGTGKTTF 32
>gnl|CDD|183503 PRK12402, PRK12402, replication factor C small subunit 2;
Reviewed.
Length = 337
Score = 27.3 bits (61), Expect = 3.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 37 LIGPSGCGKSTFLRCLNR 54
+ GP G GK+ +R L R
Sbjct: 41 VQGPPGSGKTAAVRALAR 58
>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 27.4 bits (61), Expect = 4.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 34 VTALIGPSGCGKSTFLRCLNRMNET---------IDNCVFTGE 67
V + P GCGK+T + L + ID+ T
Sbjct: 102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAA 144
>gnl|CDD|182496 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 27.3 bits (61), Expect = 4.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 164 ALAVNPEVILMDE-----PCSALDPIATASVEELIHELRESLTIVIVTH 207
ALA P +ILMDE + P VEEL+ + T V V H
Sbjct: 98 ALARRPALILMDELAHSNAPGSRHPKRWQDVEELLEAGIDVFTTVNVQH 146
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.1 bits (60), Expect = 4.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFL 49
F +NL + T + GP+G GKST L
Sbjct: 447 FRLNLHVDDVGHTLIFGPTGSGKSTLL 473
>gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family.
Members of this protein family are bacterial
lipoproteins largely from the Gammaproteobacteria.
Characterized members are expressed in extracellularly
and have esterase activity. Members include the lipase
Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell
elongation factor (cef) from Vibrio hollisae.
Length = 792
Score = 27.1 bits (60), Expect = 4.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
N+ QS +D++ LR + P NV G ++ LG++ I ++
Sbjct: 521 NLRQSILDLLGLRLSLNGSALAGAPLSG---INVIDGSKVSFLGHSLGGIVGTSFIAYAN 577
Query: 134 ASLFNEVKDRLF--HDASLLSGGQQQRVCIARALAVNPE 170
L + D L+ + ASL + G IA L +P+
Sbjct: 578 TPLGSPTADALYAVNAASLQNPGGG----IANFLLGSPD 612
>gnl|CDD|181106 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 39 GPSGCGKST----FLRCLN 53
GP GCGK++ R LN
Sbjct: 44 GPRGCGKTSSARILARSLN 62
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 26.9 bits (59), Expect = 4.7
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 169 PEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS--------MQQAARVSQRA 219
PE+ + C L I ++ +EEL LR + V ++ +QAA+ +Q A
Sbjct: 263 PELASIRRACDHLPGIMSSKIEELARGLRADIERVARENADLQRQKLEAEQAAQAAQEA 321
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP.
Length = 180
Score = 27.1 bits (61), Expect = 5.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 39 GPSGCGKSTFLRCL 52
GPSG GKST ++ L
Sbjct: 8 GPSGVGKSTLVKAL 21
>gnl|CDD|184916 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 39 GPSGCGKST----FLRCLN 53
GP GCGK++ R LN
Sbjct: 42 GPRGCGKTSSARILARSLN 60
>gnl|CDD|163297 TIGR03503, TIGR03503, conserved hypothetical protein TIGR03503.
This set of conserved hypothetical protein has a
phylogenetic range that closely matches that of
TIGR03501, a putative C-terminal protein targeting
signal.
Length = 374
Score = 26.5 bits (59), Expect = 6.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 55 MNETIDNCVFTGEIILD---GKNIYQ-SSVDVVRLRARVGMVFQRPNP 98
++E + +FTGE LD G+ S + V LR V P P
Sbjct: 164 LDERPGDGIFTGEFNLDVAPGEYRPTYQSRNPVFLREVEQPVLVYPLP 211
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 26.5 bits (58), Expect = 6.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 QNSVTALIGPSGCGKST 47
+ V AL+GP+G GK+T
Sbjct: 349 RGGVIALVGPTGAGKTT 365
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site.
Length = 142
Score = 26.6 bits (59), Expect = 7.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 36 ALIGPSGCGKSTFLRCLN 53
IG GCGK+T + L
Sbjct: 4 MFIGSVGCGKTTLTQALQ 21
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLR 50
L+D + N + L G G GKST ++
Sbjct: 21 LYDSIID-GANRIFILKGGPGTGKSTLMK 48
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 26.5 bits (59), Expect = 7.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 QNSVTALIGPSGCGKST 47
+ V AL+GP+G GK+T
Sbjct: 255 RGGVFALMGPTGVGKTT 271
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional.
Length = 213
Score = 26.5 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 93 FQRPNPFPKSIYDNVAYGP--RIHGLGNNKADID 124
+ + P+PKS + P RI+ +G KA +D
Sbjct: 11 YCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVD 44
>gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This
family describes GspE, the E protein of the type II
secretion system, also called the main terminal branch
of the general secretion pathway. This model separates
GspE from the PilB protein of type IV pilin
biosynthesis.
Length = 486
Score = 26.2 bits (58), Expect = 8.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 39 GPSGCGKSTFL-RCLNRMNETIDNCVFTGE--IILDGKNIYQSSVDVVRLRARVGMVFQR 95
GP+G GK+T L L+R+N N + T E + + I Q V+ ++G+ F
Sbjct: 249 GPTGSGKTTTLYAALSRLNTPERN-ILTVEDPVEYQIEGIGQIQVN-----PKIGLTFAA 302
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 26.2 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 39 GPSGCGKSTFLRCLNRMN-ETIDN 61
G SG GKS LR L + +DN
Sbjct: 13 GLSGAGKSVALRALEDLGYYCVDN 36
>gnl|CDD|161829 TIGR00342, TIGR00342, thiazole biosynthesis/tRNA modification
protein ThiI. The protein product of the thiI gene is
required for the synthesis of the thiazole moiety in
thiamine biosynthesis. It also acts in the generation of
4-thiouridine in tRNA, and may occur in species (such as
Mycoplasma genitalium) that lack de novo thiamine
biosynthesis.
Length = 371
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 186 TASVEELIHELRESLTIVIVTHSMQQAA 213
T EE+IH + E T V+ M +AA
Sbjct: 240 TDVQEEIIHIIPEGYTCVLCRRMMYKAA 267
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 26.1 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 37 LIGPSGCGKSTFLRCL-NRMN 56
LIG G GKST R L ++N
Sbjct: 6 LIGSGGSGKSTLARQLGEKLN 26
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal.
Members of this protein are L-seryl-tRNA(Sec) kinase.
This enzyme is part of a two-step pathway in Eukaryota
and Archaea for performing selenocysteine biosynthesis
by changing serine misacylated on selenocysteine-tRNA
to selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents archaeal proteins with
this activity.
Length = 249
Score = 25.9 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 37 LIGPSGCGKSTFLRCLNRM--NETIDNCVFTGEII 69
L G G GKSTF + L + + ID + ++I
Sbjct: 4 LTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 25.8 bits (57), Expect = 9.8
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 31 QNSVTALIGPSGCGKSTFL-RCLNRMNETIDN 61
QN ++ G SG GKS+ + + + +++
Sbjct: 119 QNRISVFAGQSGVGKSSLINALDPSVKQQVND 150
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,079,500
Number of extensions: 254642
Number of successful extensions: 1361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 362
Length of query: 254
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,028,145
Effective search space: 656587635
Effective search space used: 656587635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)