RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (254 letters) >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 486 bits (1253), Expect = e-138 Identities = 185/250 (74%), Positives = 213/250 (85%) Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 KM + VSV YGEK+ALFD++L IP+ +VTA IGPSGCGKSTFLRCLNRMN+TID C Sbjct: 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77 Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124 TG+I LDG++IY +DVV LRARVGMVFQ+PNPFPKSIY+NVAYGPRIHGL +KA++D Sbjct: 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELD 137 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 +IVE SL+KA L+ EVKDRL + LSGGQQQR+CIARA+AV+PEVILMDEPCSALDPI Sbjct: 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 ATA VEELI ELR++ TIVIVTHSMQQAARVSQR A FH+G+LVE DT+KMFT P D R Sbjct: 198 ATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDPR 257 Query: 245 TQDYIMGRFG 254 TQDYI GRFG Sbjct: 258 TQDYITGRFG 267 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 436 bits (1124), Expect = e-123 Identities = 154/245 (62%), Positives = 194/245 (79%), Gaps = 1/245 (0%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 +++ YG+K+ALFDI+++IP+N VTA IGPSGCGKST LRC NRMN+ +DNC GEI Sbjct: 29 RNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR 88 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 LDG+NIY VDV LR RVGMVFQRPNPFPKSIY+NV YG R+ G+ NN+ +D+ VE Sbjct: 89 LDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGI-NNRRVLDEAVER 147 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 SL+ A+L++EVKDRL +A LSGGQQQR+ IARA+A+ PEV+L+DEP SALDPI+T + Sbjct: 148 SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207 Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 EELI EL+ TIVIVTH+MQQAARVS A +MG LVE DTD +FT+P+ ++T+DYI Sbjct: 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYI 267 Query: 250 MGRFG 254 GR+G Sbjct: 268 TGRYG 272 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 427 bits (1101), Expect = e-120 Identities = 155/243 (63%), Positives = 194/243 (79%), Gaps = 1/243 (0%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +++ YGEK AL +INL IP+N VTALIGPSGCGKST LR LNRMN+ + G+++ Sbjct: 6 NLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130 DG++IY +DVV LR RVGMVFQ+PNPFP SIYDN+AYGPR+HG+ +K ++D+IVE S Sbjct: 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGI-KDKKELDEIVEES 124 Query: 131 LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190 LKKA+L++EVKDRL A LSGGQQQR+CIARALAV PEV+L+DEP SALDPIAT +E Sbjct: 125 LKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE 184 Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIM 250 ELI EL++ TIVIVTH+MQQAAR+S R A F+ G LVE T+++FT P ++RT+DYI Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKRTEDYIS 244 Query: 251 GRF 253 GRF Sbjct: 245 GRF 247 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 400 bits (1029), Expect = e-112 Identities = 157/250 (62%), Positives = 194/250 (77%), Gaps = 1/250 (0%) Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 K+ + + YG+ +AL INL I +N VTALIGPSGCGKSTFLR LNRMN+ I + Sbjct: 2 GKISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI 61 Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124 GE++LDG++IY+S +DV +LR RVGMVFQ+PNPFP SIYDNVAYGPR HG+ +K +D Sbjct: 62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGI-KDKKKLD 120 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 +IVE SLK A+L++EVKDRL A LSGGQQQR+CIARALAV PEV+LMDEP SALDPI Sbjct: 121 EIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 180 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 +T +EELI EL++ TIVIVTH+MQQA+R+S + A F G +VE DT +FT P D+R Sbjct: 181 STLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKR 240 Query: 245 TQDYIMGRFG 254 T+DYI GRFG Sbjct: 241 TEDYITGRFG 250 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 385 bits (991), Expect = e-108 Identities = 160/254 (62%), Positives = 197/254 (77%), Gaps = 1/254 (0%) Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 M KM + +S YG+ +AL DI+L+ QN VTALIGPSGCGKSTFLRCLNRMN+ I Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60 Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120 GEI+LDG+NIY VDVV LR RVGMVFQ+PNPFPKSI++NVAYG R++G+ + K Sbjct: 61 GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKD-K 119 Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 A + + VE SL+ A+L++EVKDRL A LSGGQQQR+CIARALAV PEV+LMDEP SA Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 LDPIAT +EELIHEL+ TI+IVTH+MQQAARVS A F+MG L+E T+++FT P Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239 Query: 241 SDQRTQDYIMGRFG 254 +++T+DYI GRFG Sbjct: 240 REKQTEDYITGRFG 253 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 368 bits (948), Expect = e-103 Identities = 137/240 (57%), Positives = 177/240 (73%), Gaps = 3/240 (1%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YG+ AL +INL I +N VTA IGPSGCGKST LR NRM E GEI+LDG+NI Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIH-GLGNNKADIDQIVEMSLKKA 134 D+ LRA+VGMVFQ+P PFP SIYDN+A+G R+ L ++A++D+ VE +L KA Sbjct: 83 LTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL--SRAEMDERVEWALTKA 140 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 +L+NEVKD+L LSGGQQQR+CIAR +A+ PEV+L+DEPCSALDPI+T +EELI Sbjct: 141 ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200 Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 EL++ T+VIVTH+MQQAAR S A ++G L+E +TD +FT P+ ++T+DYI GRFG Sbjct: 201 ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITGRFG 260 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 366 bits (942), Expect = e-102 Identities = 157/240 (65%), Positives = 192/240 (80%), Gaps = 3/240 (1%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YGEK AL+DI + IP+N VTALIGPSGCGKST LRC NRMN+ I C TG+I+ +G+NI Sbjct: 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI 75 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 S DVV LR ++GMVFQRPNPFPKSIY+NVAYGPRIHG NK +D IVE SLK A+ Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGE-KNKKTLDTIVEKSLKGAA 134 Query: 136 LFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 L++EVKDRL HD++L LSGGQQQR+CIAR LAVNPEVILMDEPCSALDPIATA +E+LI Sbjct: 135 LWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193 Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 +L++ T++IVTH+MQQAARVS ++G L+E D T ++F P ++ T++YI GRFG Sbjct: 194 DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENYITGRFG 253 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 364 bits (936), Expect = e-101 Identities = 161/249 (64%), Positives = 197/249 (79%), Gaps = 1/249 (0%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 KM S +++ YGEK+AL DINL I +N +TALIGPSGCGKSTFLRCLNRMN+ I N Sbjct: 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE 63 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125 GE++LDGKNIY VDVV LR RVGMVFQ+PNPFP SIYDNVAYGPRIHG+ +K ++D+ Sbjct: 64 GEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGI-KDKKELDK 122 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 IVE +LKKA+L++EVKD L A LSGGQQQR+CIAR +AV P+VILMDEP SALDPI+ Sbjct: 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182 Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245 T +E+L+ EL++ TIVIVTH+MQQA+RVS A F MG L+E + T+K+F P + T Sbjct: 183 TLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKET 242 Query: 246 QDYIMGRFG 254 +DYI GRFG Sbjct: 243 EDYISGRFG 251 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 356 bits (916), Expect = 3e-99 Identities = 150/247 (60%), Positives = 191/247 (77%), Gaps = 4/247 (1%) Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 + ++V YG+++AL D+++ IP+N VTA+IGPSGCGKSTFLRC+NRMN+ ID GE+ Sbjct: 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 GKN+Y + VD V LR R+GMVFQ+PNPFPKSIYDNVAYG +I G DID+ VE Sbjct: 102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY---DGDIDERVE 158 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 SL++A+L++EVKD+L LSGGQQQR+CIARA+A +PEVILMDEP SALDP+AT+ Sbjct: 159 ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHLVEEDDTDKMFTAPSDQRTQD 247 +E+LI EL E T+VIVTH+MQQAAR+S + A+F G LVE DDTDK+F P QR +D Sbjct: 219 IEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQRVED 278 Query: 248 YIMGRFG 254 YI G+FG Sbjct: 279 YITGKFG 285 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 352 bits (906), Expect = 4e-98 Identities = 129/246 (52%), Positives = 178/246 (72%), Gaps = 1/246 (0%) Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 + + V YG+K A+ I+++ +N +TALIGPSG GKST+LR LNRMN+TID TG+I Sbjct: 23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 + G +I + ++V +R +GMVFQRPNPF KSIY+N+ + G+ +K +D+IVE Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGV-KDKKVLDEIVE 141 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 SLK+A+L+++VKD L A LSGGQQQR+CIARA+AV P+++LMDEP SALDPI+T Sbjct: 142 TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248 +EE + EL+++ TI+IVTH+MQQAAR S A F++G L+E D T +FT P Q T DY Sbjct: 202 LEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDY 261 Query: 249 IMGRFG 254 + G FG Sbjct: 262 VSGHFG 267 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 352 bits (904), Expect = 6e-98 Identities = 145/259 (55%), Positives = 188/259 (72%), Gaps = 12/259 (4%) Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 + + ++V YG A+ ++ L IP+N +TA IGPSGCGKST LRC NR+N+ I Sbjct: 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68 Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124 G++ GKN+Y VD V +R R+GMVFQ+PNPFPKSIYDN+AYG RI+G K D+D Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY---KGDMD 125 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 ++VE SL++A+L++EVKD+L LSGGQQQR+CIARA+AV PEVILMDEPCSALDPI Sbjct: 126 ELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFH---------MGHLVEEDDTDK 235 +T +EEL+HEL+E TI+IVTH+MQQAARVS A F+ G+LVE D T+K Sbjct: 186 STLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245 Query: 236 MFTAPSDQRTQDYIMGRFG 254 +F +P Q T+DY+ GRFG Sbjct: 246 IFNSPQQQATRDYVSGRFG 264 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 351 bits (903), Expect = 8e-98 Identities = 144/239 (60%), Positives = 187/239 (78%), Gaps = 1/239 (0%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YGE AL +INL I +N VTA+IGPSGCGKST+++ LNRM E + + TG+I+ +NI Sbjct: 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 + S V LR VGMVFQ+PNPFPKSIYDNV YGP+IHG+ + K +D+IVE SL+ A+ Sbjct: 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT-LDEIVEKSLRGAA 152 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 +++E+KDRL +A LSGGQQQR+CIAR LA+ P+VILMDEP SALDPI+T VEEL+ E Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 L++ +I+IVTH+MQQAAR+S + A F G++ E DDTDK+F+ PSD+RT+DYI GRFG Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTEDYITGRFG 271 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 349 bits (898), Expect = 3e-97 Identities = 153/261 (58%), Positives = 192/261 (73%), Gaps = 12/261 (4%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 K+ + V YG+ AL +++ IP+ SVTALIGPSGCGKSTFLRCLNRMN+ I Sbjct: 45 KLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID 104 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHG---------- 115 G + LDG++IYQ V++V LR RVGMVFQ PNPFPKSI +N++YGPR HG Sbjct: 105 GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARL 164 Query: 116 LGNNKAD-IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILM 174 LG + D D++VE SL++A+L++EV DRL +A LSGGQQQR+CIAR LAV+PEVILM Sbjct: 165 LGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224 Query: 175 DEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHLVEEDDT 233 DEP SALDPIAT+ +E+LI EL E T+V+VTH+MQQAAR+S + A+F G LVE DDT Sbjct: 225 DEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDT 284 Query: 234 DKMFTAPSDQRTQDYIMGRFG 254 DK+F P QR +DYI G+FG Sbjct: 285 DKIFENPESQRVEDYITGKFG 305 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 347 bits (892), Expect = 2e-96 Identities = 144/252 (57%), Positives = 187/252 (74%), Gaps = 8/252 (3%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 +++ YG A+ D+NL I SVTA IGPSGCGKST LR LNRM+E I GE++ Sbjct: 8 KDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL 67 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVE 128 LDG+++Y VD V +R +GMVFQRPNPFP SI DNV G +++G NK D+D++VE Sbjct: 68 LDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVE 126 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 SL+ A+L+NEVKDRL LSGGQQQR+CIARA+AV P+V+LMDEPCSALDPI+T + Sbjct: 127 KSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM------GHLVEEDDTDKMFTAPSD 242 +E+LI+EL++ TIVIVTH+MQQAARVS + A F++ G LVE DDT+K+F+ P+ Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPTQ 246 Query: 243 QRTQDYIMGRFG 254 + T+DYI GRFG Sbjct: 247 KATEDYISGRFG 258 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 339 bits (871), Expect = 4e-94 Identities = 151/245 (61%), Positives = 190/245 (77%), Gaps = 1/245 (0%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 N +++ YG+ AL +INL IP+N VTA+IGPSGCGKSTF++ LN M + + N TGE+ Sbjct: 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 +G NI + VD+V LR +GMVFQ+ NPFP+SI+DNVAYGPRIHG NK + +IVE Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGT-KNKKKLQEIVEK 134 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 SLK +L++EVKDRL A LSGGQQQR+CIARALA NP+V+LMDEP SALDP++T + Sbjct: 135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194 Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 EELI +L+E TIVIVTH+MQQAARVS + A F+MG LVE +DT+KMF+ P DQRT DYI Sbjct: 195 EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTLDYI 254 Query: 250 MGRFG 254 G+FG Sbjct: 255 TGKFG 259 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 336 bits (864), Expect = 2e-93 Identities = 147/239 (61%), Positives = 187/239 (78%), Gaps = 2/239 (0%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YGEK+AL +++++IP+NSVTALIGPSGCGKSTF+RCLNRMN+ I NC G++ ++G++I Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 Y+ VDVV LR VGMVFQ+PNPFP SIYDNVAYGPRIHG NK D+D +VE +L+ A+ Sbjct: 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGA--NKKDLDGVVENALRSAA 139 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 L++E DRL A LSGGQQQR+CIAR LAV P++IL DEP SALDPI+TA +E+LI Sbjct: 140 LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 L++ TIVIVTH+MQQAAR+S F MG L+E T ++F P ++ T+DYI GRFG Sbjct: 200 LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYITGRFG 258 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 336 bits (863), Expect = 4e-93 Identities = 142/250 (56%), Positives = 186/250 (74%), Gaps = 1/250 (0%) Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 M++I+ + N +++ YG K+ LFDINL I + VTA IGPSGCGKSTFLRC NRMN+ + Sbjct: 1 MSEIHASVKN-LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP 59 Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120 NC GE+ +DG ++Y +VV LRA+VGMVFQ+PNPFPKSIYDNVAYGP++HGL NK Sbjct: 60 NCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNK 119 Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 +D+IVE SL L+ E+ DRL A LSGGQQQR+CIARA+AV P ++LMDEPCSA Sbjct: 120 KKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179 Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 LDP+AT +E LI EL+++ TI++VTHSM+QA +VS R A F G +VE + T ++F P Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239 Query: 241 SDQRTQDYIM 250 +T+ YI+ Sbjct: 240 QSSKTKRYIV 249 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 334 bits (858), Expect = 1e-92 Identities = 137/254 (53%), Positives = 184/254 (72%), Gaps = 14/254 (5%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 V++ YG A+ ++ IP+ VTALIGPSGCGKST LR LNRMN+ I+ C G ++ D Sbjct: 19 VTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 G ++Y VD V +R R+GMVFQ+PNPFPKSIY+N+A+G RI+G D+D++VE SL Sbjct: 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY---TGDMDELVERSL 135 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 +KA++++E KD+L LSGGQQQR+CIAR +A+ PEVILMDEPCSALDPI+T +EE Sbjct: 136 RKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE 195 Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFH-----------MGHLVEEDDTDKMFTAP 240 +HEL+++ TIVIVTH+MQQA RVS A F+ +G+LVE ++T K+F +P Sbjct: 196 TMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255 Query: 241 SDQRTQDYIMGRFG 254 + TQDYI G+FG Sbjct: 256 KQKATQDYISGKFG 269 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 332 bits (853), Expect = 5e-92 Identities = 148/245 (60%), Positives = 185/245 (75%), Gaps = 2/245 (0%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 + + YGE +AL INL IP VTALIGPSGCGKST LRCLNRMN+ I+ TG++ Sbjct: 7 ENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT 66 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 +DG++IY + +DV LR +VGMVFQ+PNPFP SIY+NVAYG R G+ +K +D++VE Sbjct: 67 MDGEDIYGN-IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGI-KDKKVLDEVVER 124 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 SL+ A+L++EVKDRL A LSGGQQQR+CIAR +A+ P+VILMDEP SALDPIAT + Sbjct: 125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI 184 Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 EEL+ EL+++ TIVIVTHSMQQA R+S R A F MG LVE DDT +F+ P D RTQ Y+ Sbjct: 185 EELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV 244 Query: 250 MGRFG 254 G FG Sbjct: 245 NGDFG 249 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 326 bits (838), Expect = 3e-90 Identities = 149/250 (59%), Positives = 191/250 (76%), Gaps = 1/250 (0%) Query: 5 YKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 Y++ ++ + + L ++NL IP+NSVTALIGPSGCGKSTF+R LNRMN+ I Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61 Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124 G I LDG +IY +VDVV LR +VGMVFQ+PNPFPKSI+DNVAYG RIHG +++ I+ Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGE-DDEDFIE 120 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 + VE SLK A+L++EVKD+L A LSGGQQQR+CIAR +AV+PEVILMDEPCSALDPI Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 +T +E+LIH+L+E TIVIVTH+MQQA RVS+ + F G ++E TD++F P D+R Sbjct: 181 STTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKR 240 Query: 245 TQDYIMGRFG 254 T+DYI GRFG Sbjct: 241 TEDYITGRFG 250 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 326 bits (838), Expect = 3e-90 Identities = 131/246 (53%), Positives = 175/246 (71%), Gaps = 3/246 (1%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 + +SV Y +K+AL ++L N +TALIGPSG GKST LR +NRMN+ TG I+ Sbjct: 9 SDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV 68 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 +G NIY D V LR +GMVFQ+PNPFP SIY+NV YG R+ G+ +K +D+ VE Sbjct: 69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGI-KDKQVLDEAVEK 127 Query: 130 SLKKASLFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 SLK AS+++EVKDRL HD++L LSGGQQQRVCIAR LA +P++IL+DEP SALDPI+ Sbjct: 128 SLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248 +EE + L++ T+++VT SMQQA+R+S R F G L+E +DT +MF P + T+DY Sbjct: 187 IEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246 Query: 249 IMGRFG 254 I G+FG Sbjct: 247 ISGKFG 252 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 325 bits (834), Expect = 7e-90 Identities = 153/249 (61%), Positives = 189/249 (75%), Gaps = 1/249 (0%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 K+ + V+ YG+ AL I+++I + SV A IGPSGCGKSTFLR NRMN+ I Sbjct: 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE 62 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125 GEI +DG+NIY V V LR VGMVFQRPNPFPKSI++NVAYG R++G+ +N A I Q Sbjct: 63 GEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN-AFIRQ 121 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 VE +LK A+L++EVKD+L A LSGGQQQR+CIARA+AV+P V+LMDEP SALDPI+ Sbjct: 122 RVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245 TA VEELIHEL++ TIVIVTH+MQQAARVS + A F+MG +VE DDT K+FT P + T Sbjct: 182 TAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEAT 241 Query: 246 QDYIMGRFG 254 Q+YI GRFG Sbjct: 242 QNYITGRFG 250 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 321 bits (825), Expect = 8e-89 Identities = 142/247 (57%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66 +++ S+ YGE A+ +N I VTA+IGPSGCGKSTFLR +NRMN+ I +C TG Sbjct: 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99 Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126 ++ DG++IY D V LR ++GMVFQ+PNPFPKSI+DN+AYGPR+HG+ N+K +++I Sbjct: 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGI-NDKKQLEEI 158 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 VE SL+KA+L++EV DRL +A LSGGQQQR+C+AR LAV PE++L+DEP SALDP AT Sbjct: 159 VEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218 Query: 187 ASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 A +E+LI ELR S TI+IVTH+MQQA+RVS F+ G LVE T ++FT P D+ T+ Sbjct: 219 AKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278 Query: 247 DYIMGRF 253 DYI GRF Sbjct: 279 DYITGRF 285 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 309 bits (792), Expect = 5e-85 Identities = 146/255 (57%), Positives = 193/255 (75%), Gaps = 4/255 (1%) Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 MN K+ +++V +G+ A+ D+++ P+NSVTA+IGPSGCGKST LR +NRM++ + Sbjct: 1 MNNKVKL--EQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVP 58 Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNN 119 + TG+I+LD +IY VD V +R RVGMVFQ+PNPFP SIYDNV G +++G N Sbjct: 59 SARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR-VN 117 Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179 +++ D+IVE SLK+ +L++EVKDRL +A LSGGQQQR+CIAR +AV PEVILMDEP S Sbjct: 118 RSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177 Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 ALDPI+T +EELI EL+E TI+IVTH+MQQAARVS A F+MG LVE +T K+FT Sbjct: 178 ALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 Query: 240 PSDQRTQDYIMGRFG 254 P ++T+DYI GRFG Sbjct: 238 PEKKQTEDYITGRFG 252 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 308 bits (791), Expect = 7e-85 Identities = 143/243 (58%), Positives = 187/243 (76%), Gaps = 1/243 (0%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S+ YGEKRA+ DI++ I +++VTALIGPSGCGKSTFLR +NRMN+ I + GEI+ + Sbjct: 27 LSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYE 86 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 G NI S+++VV LR +GMVFQ+PNPFPKSIY+N+ + + G K+ +D+IVE SL Sbjct: 87 GLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-ERRKSVLDEIVEESL 145 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 KA+L++EVKDRL A LSGGQQQR+CIAR LA+ P V+L+DEP SALDPI+ A +EE Sbjct: 146 TKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE 205 Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251 LI EL+E +I+IVTH+MQQA RVS R A F G LVE D T+++FT+P Q+T+DYI G Sbjct: 206 LITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYING 265 Query: 252 RFG 254 RFG Sbjct: 266 RFG 268 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 308 bits (790), Expect = 9e-85 Identities = 141/250 (56%), Positives = 186/250 (74%), Gaps = 2/250 (0%) Query: 6 KMISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 K+I++ V + YG+ AL I+L QN +TALIGPSGCGKST+LR LNRMN+ I Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63 Query: 65 TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADID 124 TG + L G+NIY + DVV+LR +VGMVFQ+PNPFP SIY+NV YG R+ G+ +KA +D Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGV-KDKAVLD 122 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 + VE SLK+A++++EVKD L A LSGGQQQRVCIAR LAV P+VIL+DEP SALDPI Sbjct: 123 EAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 ++ +E ++ ELR+ TI++VTHSM QA+R+S + A F G+L+E DT +MF P ++ Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242 Query: 245 TQDYIMGRFG 254 T+DYI GRFG Sbjct: 243 TEDYITGRFG 252 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 301 bits (771), Expect = 1e-82 Identities = 141/246 (57%), Positives = 189/246 (76%), Gaps = 1/246 (0%) Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 + +++ Y + +AL +IN+KI +NS+TALIGPSGCGKSTFLR LNRMN+ ++ G + Sbjct: 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 I +GKNIY ++ D++ LR ++GMVFQ PNPF SIYDN++YGP+IHG +K +D+IVE Sbjct: 70 IYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT-KDKKKLDEIVE 128 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 SLKK++L+NEVKD+L +A LSGGQQQR+CIAR LA+ P VILMDEP SALDPI+T Sbjct: 129 QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248 +EELI L+ES TI+IVTH+MQQA R+S R A F G + EE TD++F P + +T++Y Sbjct: 189 IEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEY 248 Query: 249 IMGRFG 254 I G+FG Sbjct: 249 ISGKFG 254 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 296 bits (758), Expect = 4e-81 Identities = 141/253 (55%), Positives = 185/253 (73%), Gaps = 3/253 (1%) Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 K NK++ YG +AL +IN+ + + VTALIGPSGCGKSTFLRC NRM++ Sbjct: 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73 Query: 64 FTGEIIL--DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKA 121 + GEIIL D NI VD + +R R+ MVFQ+PNPFPKSI++NVAYG RI G+ ++ Sbjct: 74 YEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGV-KRRS 132 Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 +++ VE +L+ A+L++EVKDRL A LSGGQQQR+CIARALA +PE++L DEP SAL Sbjct: 133 ILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192 Query: 182 DPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 DPIATAS+EELI +L+ +TI+IVTH+MQQAARVS A +MG L+E TD +F P Sbjct: 193 DPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPK 252 Query: 242 DQRTQDYIMGRFG 254 +++T+DYI GRFG Sbjct: 253 NKQTEDYITGRFG 265 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 291 bits (746), Expect = 1e-79 Identities = 136/243 (55%), Positives = 180/243 (74%), Gaps = 1/243 (0%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 V+ Y + + L +IN+ P+ +TA+IGPSGCGKST LR LNRMN+ + G ++LD Sbjct: 10 VNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLD 69 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 +NIY ++DVV LR RVGMVFQ+PNPFPKSI+DNVA+GPR+ G ++ +D++VE SL Sbjct: 70 NENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGT-TAQSRLDEVVEKSL 128 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 ++A+L++EVKD L LSGGQQQR+CIAR LA+ PEVILMDEPCSALDP++T +EE Sbjct: 129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188 Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251 L+ EL+++ TI IVTH+MQQAAR S G LVE T ++F+ P D+RT+DYI G Sbjct: 189 LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYITG 248 Query: 252 RFG 254 RFG Sbjct: 249 RFG 251 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 291 bits (746), Expect = 1e-79 Identities = 134/252 (53%), Positives = 179/252 (71%), Gaps = 12/252 (4%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 V V YG AL D++LKIP + A IGPSGCGKST LRC NRMN+ I G ++ Sbjct: 26 VKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 +NIY S ++ V+LR +VGMVFQRPNPFPKSIY+N+A+ PR +G K ++D++VE SL Sbjct: 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY---KGNLDELVEDSL 142 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 ++A+++ EVKD+L + LSGGQQQR+CIARA+A+ P+V+LMDEPCSALDPI+T VEE Sbjct: 143 RRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202 Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHM---------GHLVEEDDTDKMFTAPSD 242 L EL+E TI++VTH+MQQA+RV+ A F+ G LVE T++MF +P Sbjct: 203 LCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262 Query: 243 QRTQDYIMGRFG 254 + ++YI GRFG Sbjct: 263 KEAREYISGRFG 274 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 290 bits (742), Expect = 4e-79 Identities = 139/249 (55%), Positives = 180/249 (72%), Gaps = 2/249 (0%) Query: 7 MISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 +IS K V + YG AL I+L + +TALIGPSGCGKSTFLRCLNRMN+ I+N T Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125 GEI +G+NIY S +D+V LR VGMVFQ+P PFP S+YDNVAYG +I G+ +K IDQ Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGV-KDKELIDQ 122 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 VE SLK+A+++ E KD L +A SGGQQQR+CIARALAV P+V+L+DEP SALDPI+ Sbjct: 123 RVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182 Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245 ++ +EE + EL+ T ++VTH++QQA R+S + A G L+E T++MF AP Q T Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQIT 242 Query: 246 QDYIMGRFG 254 DY+ GRFG Sbjct: 243 SDYLNGRFG 251 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 288 bits (738), Expect = 1e-78 Identities = 131/249 (52%), Positives = 186/249 (74%), Gaps = 2/249 (0%) Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66 + + V++ YG+K+A+ ++NL + + +V ALIGPSGCGK+TFLR +NRM++ TG Sbjct: 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64 Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQ 125 I+LDG++IY VD V +R RVGMVFQ+PNPFP S++DNV G ++ G+ ++ + + Sbjct: 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI-RDRDHLME 123 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 + E SL+ A+L++EVKDRL A+ LSGGQQQR+CIARALAV PE++LMDEP SALDP + Sbjct: 124 VAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183 Query: 186 TASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245 TA +E+L+ +L++ TI+IVTH+M QAARVS + F +G LVE TD++FT P D+RT Sbjct: 184 TARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERT 243 Query: 246 QDYIMGRFG 254 + Y+ GRFG Sbjct: 244 EAYVSGRFG 252 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 288 bits (737), Expect = 1e-78 Identities = 142/260 (54%), Positives = 181/260 (69%), Gaps = 7/260 (2%) Query: 1 MNQIYKMISNK-VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETI 59 Q+ I K +S Y +A+ I++ I +N VTA+IGPSGCGKSTF++ LNR++E Sbjct: 1 NQQLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60 Query: 60 DNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNN 119 G + G+NIY +++ RLR ++GMVFQRPNPFP SIY+NVAYG RI Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA-KLP 119 Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179 +AD+D+IVE +LK A+L+ EVKD+L A LSGGQQQR+CIARALA+ P+V+LMDEPCS Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMF-----HMGHLVEEDDTD 234 ALDPIAT VEELIH LR LTI IVTH+MQQA RVS A F +G +VE T Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTT 239 Query: 235 KMFTAPSDQRTQDYIMGRFG 254 ++F+ P D RT+DY+ GRFG Sbjct: 240 QIFSNPLDSRTRDYVSGRFG 259 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 284 bits (728), Expect = 2e-77 Identities = 130/242 (53%), Positives = 176/242 (72%), Gaps = 1/242 (0%) Query: 13 SVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG 72 S YGEK+A+ ++ +KI +N +TA+IGPSGCGK+T LR +NRMN+ I G+I G Sbjct: 10 SAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 Query: 73 KNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLK 132 ++IY +DV R +VGMVFQ+P PFP SIYDNVA+GPRIHG+ +K +D+IVE SLK Sbjct: 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGV-KSKHKLDRIVEESLK 128 Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEEL 192 KA+L++EVK L + LSGGQQQR+CIARALAV PEVIL+DEP SALDPIAT +E+L Sbjct: 129 KAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188 Query: 193 IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252 + EL E+ TIVIVTH++ QA R++ A + G L+E T ++ P ++ T++Y+ G+ Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEYLTGK 248 Query: 253 FG 254 G Sbjct: 249 IG 250 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 280 bits (717), Expect = 3e-76 Identities = 125/242 (51%), Positives = 168/242 (69%), Gaps = 1/242 (0%) Query: 14 VCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK 73 V YG + ++LKIPQN V AL+GPSGCGKST LR NR+ E + GE+ L G+ Sbjct: 12 VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLK 132 NIY VD + +R VGMVFQ PNPFP +IYDNVA G +++GL +K ++D+ VE +LK Sbjct: 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131 Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEEL 192 KA+L++EVKDRL S LSGGQ+QR+ IARALA+ P+++LMDEP + +DP+ TA +EEL Sbjct: 132 KAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191 Query: 193 IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252 + EL++ TIV+VTHS QAARVS A ++G L+E T K+F P + T+ Y+ G Sbjct: 192 LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVTGA 251 Query: 253 FG 254 G Sbjct: 252 LG 253 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 274 bits (703), Expect = 1e-74 Identities = 125/246 (50%), Positives = 180/246 (73%), Gaps = 4/246 (1%) Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 + +++ YG+K+ALFDIN++I QN +TALIG SGCGKSTFLRC NRMN+ I G + Sbjct: 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLV 62 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 ++GK++ + DVV LR VGMVFQ+PN F KSIY+N++Y P++HG+ NK + + +V Sbjct: 63 EIEGKDV--KNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVV 120 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 L+K LF EVKD+L +A LSGGQQQR+CIARALA+ P+++L+DEP SALDPI++ Sbjct: 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180 Query: 189 VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDY 248 +EEL+ EL +L++++VTH+MQQ RV+ A FH+G L+E ++ + F P ++T+ Y Sbjct: 181 IEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAY 240 Query: 249 IMGRFG 254 + G FG Sbjct: 241 LSGAFG 246 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 265 bits (677), Expect = 1e-71 Identities = 129/236 (54%), Positives = 169/236 (71%), Gaps = 1/236 (0%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 K L D+NL I +N VTA IGPSGCGKSTFLR LN++N+ I+ GEI G N Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 + + LR R+GMVFQ+P PF SI+DNVAYGPR +G+ N++ +++IVE SLK A+L++ Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGI-NDRKILEKIVEKSLKSAALWD 213 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 EVKD L + LSGGQQQR+CIARA+A+ PEV+LMDEP SALDPIATA +EELI EL++ Sbjct: 214 EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK 273 Query: 199 SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 +I+IVTHSM QA R+S F+ G + E +T +F P ++RT+DYI G+ G Sbjct: 274 KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYISGKIG 329 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 259 bits (663), Expect = 5e-70 Identities = 126/252 (50%), Positives = 169/252 (67%), Gaps = 8/252 (3%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 N +S Y ++ L ++++I Q+ VTA+IGPSGCGKSTFL+CLNRMNE G + Sbjct: 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE 70 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 +NIY+ V++ RLR +V MV +PN FP S+YDNVAYG +I G K +ID IVE Sbjct: 71 FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW-RPKLEIDDIVES 129 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 +LK A L++E+K ++ A LSGGQQQR+CIARALAV P+V+LMDEPC LDPIA+ V Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189 Query: 190 EELIH--ELRESLTIVIVTHSMQQAARVSQRAAMFH-----MGHLVEEDDTDKMFTAPSD 242 E LI LR LT+VIV+H++ Q +R+S A F +G LVE T K+F +P D Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHD 249 Query: 243 QRTQDYIMGRFG 254 RT++Y++ R G Sbjct: 250 SRTREYVLSRLG 261 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 254 bits (649), Expect = 2e-68 Identities = 120/248 (48%), Positives = 167/248 (67%), Gaps = 3/248 (1%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 K+ + V +G+ L +NL+IP N++TAL+GPSG GKST LR NR+ E + Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADID 124 GE+ LDG++I++ +DV+ LR RV MVFQ PNP P SI++NVA G +++ L +K ++ Sbjct: 63 GEVYLDGQDIFK--MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 + V +L+KA L++EVKDRL A LSGGQQQR+CIARALA PEV+L DEP + LDP Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPE 180 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 TA +E L EL++ +TIV+VTH QQAAR+S A + G +VE T ++FT P + Sbjct: 181 NTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHEL 240 Query: 245 TQDYIMGR 252 T+ Y+ GR Sbjct: 241 TEKYVTGR 248 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 253 bits (648), Expect = 2e-68 Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 11/246 (4%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YG A+ D ++ I +N +T IGPSGCGKST LR LNRMN+ + F G + G+++ Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 Y VD V +R +GMVFQ+PNPF SI+DNVA+G R L K D+ V+ +L+ A+ Sbjct: 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR---LNRYKGDLGDRVKHALQGAA 134 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 L++EVKD+L LSGGQQQR+CIARA+A PEV+L+DEPCSALDPIAT VEEL+ E Sbjct: 135 LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHM--------GHLVEEDDTDKMFTAPSDQRTQD 247 L++ TI +VTH+MQQA RV+ A F + G+LVE T ++F P +Q T D Sbjct: 195 LKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSD 254 Query: 248 YIMGRF 253 YI G+F Sbjct: 255 YISGKF 260 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 231 bits (591), Expect = 9e-62 Identities = 115/248 (46%), Positives = 164/248 (66%), Gaps = 2/248 (0%) Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66 M + +++ + K L +++ P +VT+L+GP+G GK+TFLR LNRMN+ + ++G Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81 Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126 +++L G++I+ DV+ R RVGM+FQRPNPFP SI DNV G R H L K + + Sbjct: 82 DVLLGGRSIFNYR-DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRK-EFRGV 139 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 + L + L++ VKDRL LSGGQQQ +C+AR LAVNPEV+L+DEP SALDP T Sbjct: 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199 Query: 187 ASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 +EE I L + LT++IVTH++ QAAR+S RAA+F G LVEE T+++F++P T Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETA 259 Query: 247 DYIMGRFG 254 Y+ G G Sbjct: 260 RYVAGLSG 267 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 230 bits (588), Expect = 2e-61 Identities = 116/237 (48%), Positives = 167/237 (70%), Gaps = 5/237 (2%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV-FTGEIILDGKNIY 76 +K L DI +KIP NS+ ++GPSG GKST L+ LNR+ E D+ + G+++ GK+I+ Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 Query: 77 QSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 Q +D ++LR VGMVFQ+PNPFP SIYDN+AY + HG+ K +I +IVE L+K Sbjct: 82 Q--IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI-KEKREIKKIVEECLRKVG 138 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 L+ EV DRL AS LSGGQQQR+ IARALA+ P+V+LMDEP S +D + + ++E+LI E Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252 L+ + IVIV+H+ QQ ARV+ A + G LVE ++++FT+P ++ T+ Y++GR Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYVIGR 255 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 190 bits (484), Expect = 4e-49 Identities = 97/248 (39%), Positives = 136/248 (54%), Gaps = 26/248 (10%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 VS +G + L +I+L I Q V +IGPSG GKST LRC+N++ E I + G++I+ Sbjct: 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-EEITS----GDLIV 60 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129 DG + VD +R GMVFQ+ FP + +NV +GP + G +K + ++ Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQARE 119 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L K L +R H S LSGGQQQRV IARALAV P+++L DEP SALDP Sbjct: 120 LLAKVGL----AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP------ 169 Query: 190 EELIHEL--------RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 EL HE+ E +T+VIVTH + A +V+ R G + E+ D + P Sbjct: 170 -ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228 Query: 242 DQRTQDYI 249 QR Q+++ Sbjct: 229 SQRLQEFL 236 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 188 bits (478), Expect = 2e-48 Identities = 95/236 (40%), Positives = 145/236 (61%), Gaps = 18/236 (7%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 K L DI++K ++ ++GPSG GKST ++ +NR+ + + G I++DG +I Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE-----GSILIDGVDI--K 68 Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 ++DV+ LR ++GMVFQ+P+ F ++ DN+ YGP + G + ++D VE L L Sbjct: 69 TIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG----EKNVD--VEYYLSIVGL-- 120 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196 K+ D LSGG+ QRV IAR LA NPEV+L+DEP SALDP +T +EELI +L Sbjct: 121 -NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252 + +LT++ +TH+M+QA R+ A + G LVE T FT P ++ T+ +I G+ Sbjct: 180 KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGK 235 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 170 bits (434), Expect = 3e-43 Identities = 89/256 (34%), Positives = 142/256 (55%), Gaps = 28/256 (10%) Query: 2 NQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNE-TID 60 ++++ + AL +++L IP + +IG SG GKST +RC+N + T Sbjct: 8 SKVFPQGGRTIH-------ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-- 58 Query: 61 NCVFTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGN 118 +G +++DG+++ S ++ + R ++GM+FQ N ++++DNVA + G Sbjct: 59 ----SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-- 112 Query: 119 NKADIDQIVEMSLKKASLFNEVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDE 176 KA+I V L+ L D+ D + LSGGQ+QRV IARALA NP+V+L DE Sbjct: 113 PKAEIKARVTELLELVGL----SDK--ADRYPAQLSGGQKQRVAIARALASNPKVLLCDE 166 Query: 177 PCSALDPIATASVEELIHEL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234 SALDP T S+ EL+ ++ RE LTIV++TH M R+ R A+ G LVE+ Sbjct: 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226 Query: 235 KMFTAPSDQRTQDYIM 250 ++F+ P T+++I Sbjct: 227 EVFSHPKHPLTREFIQ 242 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 159 bits (403), Expect = 9e-40 Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 8/234 (3%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG-KNIYQ 77 + L I+L++ V A+IGPSG GK+T LRC+N + + + G+I +D +++ Q Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75 Query: 78 SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 + +LR VG VFQ N FP +++ +N+ GP I G K + L K L Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEPKEEATARARELLAKVGL 134 Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 K+ + LSGGQQQRV IARALA+ PEVIL DEP SALDP V I +L Sbjct: 135 --AGKETSY--PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190 Query: 197 -RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 +E T+VIVTH M A V+ RA G +VE+ +F P RT+ ++ Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL 244 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 153 bits (389), Expect = 3e-38 Identities = 94/242 (38%), Positives = 135/242 (55%), Gaps = 21/242 (8%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YG +ALFDI L PQ L+GPSG GKS+ LR LN + E + G + + G + Sbjct: 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-EMPRS----GTLNIAGNHF 66 Query: 76 YQSSV----DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGP-RIHGLGNNKADIDQIVEM 129 S + LR VGMVFQ+ N +P ++ N+ P R+ GL ++A + + ++ Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA-LARAEKL 125 Query: 130 SLKKASLFNEVKDRL-FHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 L++ L DR H LSGGQQQRV IARAL + P+V+L DEP +ALDP TA Sbjct: 126 -LERLRL-KPYADRFPLH----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 Query: 189 VEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQD 247 + +I EL E+ +T VIVTH ++ A + + R GH+VE+ D FT P + ++ Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTQPQTEAFKN 238 Query: 248 YI 249 Y+ Sbjct: 239 YL 240 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 149 bits (377), Expect = 8e-37 Identities = 83/240 (34%), Positives = 135/240 (56%), Gaps = 16/240 (6%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 G K+ + D +L I + + ++G SG GKST +R LNR+ E G+I +DG+NI Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-----AGQIFIDGENIM 58 Query: 77 QSSVDVVR--LRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 + S +R R ++GMVFQ+ FP +I N + GP + LG + + + LK Sbjct: 59 KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPEL--LGWPEQERKEKALELLKL 116 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 L E + R + LSGG QQRV +ARALA P+++LMDE SALDP+ S+++ + Sbjct: 117 VGL-EEYEHRYPDE---LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172 Query: 194 HELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251 +L+ +L TIV +TH + +A R+ R + G +V+ D++ P+++ +++I Sbjct: 173 KKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGK 232 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 146 bits (369), Expect = 7e-36 Identities = 91/250 (36%), Positives = 131/250 (52%), Gaps = 28/250 (11%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 +G L +N + ALIGPSG GKST LR L + E ID G+I ++G+ + Sbjct: 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDE----GQIQVEGEQL 64 Query: 76 YQ-----------SSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADI 123 Y + ++R ++GMVFQ N FP K++ DNV P + LG +A Sbjct: 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAP-VLVLGMARA-- 121 Query: 124 DQIVEMSLKKASLFNEV--KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 E + L + V D+ H + LSGGQQQRV IARALA+ P+V+L DE SAL Sbjct: 122 ----EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177 Query: 182 DPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 DP V +I L LT+++VTH M A + R F G +VE+ D++F Sbjct: 178 DPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 Query: 240 PSDQRTQDYI 249 P ++RT++++ Sbjct: 238 PKEERTREFL 247 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 144 bits (364), Expect = 2e-35 Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 19/239 (7%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SS 79 AL +++L +P + +IG SG GKST +RC+N + +G +I+DG+++ S+ Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-----SGSVIVDGQDLTTLSN 74 Query: 80 VDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 ++ + R ++GM+FQ N ++++ NVA + K +I + V L L + Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN--TPKDEIKRKVTELLALVGLGD 132 Query: 139 EVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 + HD+ S LSGGQ+QRV IARALA NP+V+L DE SALDP T S+ EL+ E+ Sbjct: 133 K------HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186 Query: 197 --RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRF 253 R LTI+++TH M R+ A+ G L+E+ ++F+ P Q +I Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTL 245 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 140 bits (355), Expect = 2e-34 Identities = 94/263 (35%), Positives = 134/263 (50%), Gaps = 27/263 (10%) Query: 7 MISNKVSVC-----YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDN 61 M NK++V YGE L ++L+ V ++IG SG GKSTFLRC+N + + + Sbjct: 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE- 59 Query: 62 CVFTGEIILDGKNIY-------QSSV----DVVRLRARVGMVFQRPNPFPK-SIYDNVAY 109 G I+++G+ I Q V + LR R+ MVFQ N + ++ +NV Sbjct: 60 ----GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 115 Query: 110 GPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNP 169 P I LG +K + + L K + + + LSGGQQQRV IARALA+ P Sbjct: 116 AP-IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEP 171 Query: 170 EVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 EV+L DEP SALDP V ++ +L E T+V+VTH M A VS H G + Sbjct: 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 Query: 229 EEDDTDKMFTAPSDQRTQDYIMG 251 EE +++F P R Q ++ G Sbjct: 232 EEGAPEQLFGNPQSPRLQQFLKG 254 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 138 bits (350), Expect = 1e-33 Identities = 71/216 (32%), Positives = 128/216 (59%), Gaps = 15/216 (6%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 EK+AL ++N++I LIG +G GKST ++ LN + + +G+II+DG +I Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-----SGKIIIDGVDITD 73 Query: 78 SSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 V + +R +VG+VFQ P F ++I ++A+GP LG ++ +I+ V+ ++ Sbjct: 74 KKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI--NLGLSEEEIENRVKRAMNIVG 131 Query: 136 L-FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 L + + KD+ + LSGGQ++RV IA +A+ P+++++DEP + LDP + I Sbjct: 132 LDYEDYKDKSPFE---LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188 Query: 195 ELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 EL + ++TI++V+HSM+ A+++ R + + G Sbjct: 189 ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 138 bits (349), Expect = 1e-33 Identities = 65/194 (33%), Positives = 108/194 (55%), Gaps = 14/194 (7%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 G L +N + V AL+G +G GKST L LN + +G +++DG+ + Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-----SGAVLIDGEPLD 57 Query: 77 QSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 S ++ R RVG+VFQ P+ F + +VA+GP LG ++A++++ V +L Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL--NLGLSEAEVERRVREALTAV 115 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 + +++R H LSGG+++RV IA A+A+ P+V+L+DEP + LDP + ++ Sbjct: 116 GA-SGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171 Query: 195 ELRES-LTIVIVTH 207 LR +T+VI TH Sbjct: 172 RLRAEGMTVVISTH 185 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 136 bits (344), Expect = 5e-33 Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 32/242 (13%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 +S +G +AL D+NL++P S+ AL+GPSG GKST LR + + + +G I Sbjct: 4 ANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-----SGRIR 58 Query: 70 LDGKNIYQSSVDVVRLRAR---VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQ 125 L+G+ D R+ AR +G VFQ F ++ DN+A+G I + KA I Sbjct: 59 LNGQ-------DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI--RKHPKAKIKA 109 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 VE L+ L + DR + LSGGQ+QRV +ARALAV P+V+L+DEP ALD Sbjct: 110 RVEELLELVQL-EGLGDRY---PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD--- 162 Query: 186 TASV-EELIHELRE-----SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 A V +EL LR+ +T V VTH ++A V+ R + G + + D+++ Sbjct: 163 -AKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 Query: 240 PS 241 P+ Sbjct: 222 PA 223 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 133 bits (337), Expect = 4e-32 Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 20/230 (8%) Query: 10 NKVSVCYGE-KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 +S Y K+AL +INL I A+IGPSG GKST LRC+NR+ E +G I Sbjct: 5 ENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-----SGSI 59 Query: 69 ILDGKNIYQSSVDVVR-LRARVGMVFQRPNPFP-KSIYDNV-----AYGPRIHGLGNNKA 121 +L+G +I + +R LR R+GM+FQ N ++ +NV Y P L + Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119 Query: 122 DIDQIVEMS-LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 + D+ +S L++ L D+ + A LSGGQQQRV IARALA P++IL DEP ++ Sbjct: 120 EEDKERALSALERVGL----ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 Query: 181 LDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 LDP + V + + + + +T++I H + A + + R G +V Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 132 bits (335), Expect = 8e-32 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 19/242 (7%) Query: 11 KVSVCYG-----EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 KV Y E+RAL+D+N+ IP S A+IG +G GKST L+ LN + + V Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66 Query: 66 GE-IILDGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKAD 122 GE +I GK + + LR +VG+VFQ P F +++ ++ +GP G ++ D Sbjct: 67 GERVITAGKK----NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPM--NFGVSEED 120 Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 Q ++ L E+ R + LSGGQ +RV IA LA+ PEV+++DEP + LD Sbjct: 121 AKQKAREMIELVGLPEELLARSPFE---LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 Query: 183 PIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 P + E+ ++L + LT V+VTHSM+ AAR + + + H G + + ++F P Sbjct: 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237 Query: 241 SD 242 + Sbjct: 238 DE 239 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 131 bits (331), Expect = 2e-31 Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 23/245 (9%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 + V YG L D++L+I + ALIG SGCGK+T LR + + TG I + Sbjct: 11 LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF---VKAAGLTGRIAIA 67 Query: 72 GKNIYQSSVDVVRL---RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIV 127 + D+ + + ++FQ FP + DNVA+G R + KADI + V Sbjct: 68 DR-------DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM--PKADIAERV 118 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 +LK L D H + LSGG QQR+ IARA+A+ P+V+L+DEP SALD A Sbjct: 119 ADALKLVGL----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174 Query: 188 SV-EEL--IHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 ++ EE+ +HE LTI+ VTH A ++ +A + G L + ++ AP+D Sbjct: 175 NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 Query: 245 TQDYI 249 +++ Sbjct: 235 AAEFL 239 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 129 bits (327), Expect = 6e-31 Identities = 73/216 (33%), Positives = 117/216 (54%), Gaps = 15/216 (6%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 E RALFD+NL I S TA IG +G GKST ++ LN ++ G + +D I Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-----QGSVRVDDTLITS 73 Query: 78 SSV--DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 +S D+ ++R +VG+VFQ P F +++ +VA+GP+ G+ +A + + L Sbjct: 74 TSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA--EALAREKLAL 131 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 + + ++ + LSGGQ +RV IA LA+ P+++++DEP + LDP + L Sbjct: 132 VGISESLFEKNPFE---LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188 Query: 194 HELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 +L +S +TIV+VTH M A + + G LV Sbjct: 189 KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 129 bits (325), Expect = 1e-30 Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 33/219 (15%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 +G AL DI+L + + L+GPSGCGK+T LR + G I Sbjct: 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRII------------AGLERQTAGTI 61 Query: 76 YQSSVDVVRL--RAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 YQ D+ RL + R G+VFQ FP ++ DN+AYG + G +A++ + V L Sbjct: 62 YQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELL 119 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV-E 190 L + + LSGGQQQRV +ARALA +P ++L+DEP SALD A V E Sbjct: 120 DLVGLPG-SERKY---PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD----ARVRE 171 Query: 191 ELIHELRE-----SLTIVIVTHSMQQAARVSQR-AAMFH 223 L E+R+ +T ++VTH ++A ++ R M H Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 128 bits (323), Expect = 1e-30 Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 18/229 (7%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 +G + ++NL I Q ++ L+GPSGCGK+T LR + + + + G+I +DG+++ Sbjct: 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE-----GQIFIDGEDV 70 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 S+ + + MVFQ FP S+ +NV YG ++ LG K + Q V+ +L+ Sbjct: 71 THRSIQ----QRDICMVFQSYALFPHMSLGENVGYGLKM--LGVPKEERKQRVKEALELV 124 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 L +DR + D +SGGQQQRV +ARAL + P+V+L DEP S LD S+ E I Sbjct: 125 DL-AGFEDR-YVDQ--ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180 Query: 195 ELRESLTI--VIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 EL++ I + VTH +A VS + + G +++ +++ P+ Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 128 bits (323), Expect = 2e-30 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 15/238 (6%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 + + ++V YG KR L D++L +P +TALIGP+GCGKST L+C R+ + Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----QS 56 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQR-PNPFPKSIYDNVAYG--PRIHGLGNNKAD 122 G + L K I S +L R+ ++ Q P ++ + VAYG P + G A+ Sbjct: 57 GTVFLGDKPISMLSSR--QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE 114 Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 + V ++++ + N + DR D LSGGQ+QR +A LA + V+L+DEP + LD Sbjct: 115 DNARVNQAMEQTRI-NHLADRRLTD---LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 Query: 183 PIATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 + L+ EL + T+V V H + QA+R + GH++ + +++ T Sbjct: 171 INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 127 bits (322), Expect = 2e-30 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 14/223 (6%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 AL IN K + + AL+GP+G GKST N + + GE+++ G+ I Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS-----GEVLIKGEPIKYDKK 71 Query: 81 DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 ++ +R VG+VFQ P+ F ++ ++VA+GP LG +K ++++ V+ +LK + Sbjct: 72 SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL--NLGLSKEEVEKRVKEALKAVGMEG 129 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-R 197 H LSGGQ++RV IA LA+ PE+I++DEP S LDP+ + + +L+++L + Sbjct: 130 FENKPPHH----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185 Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 E +TI+I TH + + + + G +++E ++F+ Sbjct: 186 EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 127 bits (320), Expect = 3e-30 Identities = 72/216 (33%), Positives = 126/216 (58%), Gaps = 16/216 (7%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79 +AL ++L IP+ S TAL+GP+G GKST L LN + G + + G+ + + Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-----LPQRGRVKVMGREVNAEN 73 Query: 80 VDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 VR ++VG+VFQ P+ F +++D+VA+GP GL K ++++ VE +LK ++ Sbjct: 74 EKWVR--SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD--KDEVERRVEEALKAVRMW 129 Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196 + +D+ + LS GQ++RV IA LA++P+VI++DEP + LDP ++ E++ L Sbjct: 130 -DFRDKPPYH---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH 185 Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232 + T+++ TH + AA + + + G ++ E D Sbjct: 186 NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 126 bits (319), Expect = 4e-30 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 15/221 (6%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 AL IN+ I + VTA++G +G GKST + LN + + +G I+ DGK I S Sbjct: 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-----SGRILFDGKPIDYSRK 75 Query: 81 DVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 +++LR VGMVFQ P+ F S+Y +V++G L + ++ + V+ +LK+ + Sbjct: 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV--NLKLPEDEVRKRVDNALKRTGI-E 132 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 +KD+ H LS GQ++RV IA L + P+V+++DEP + LDP+ + + +L+ E+++ Sbjct: 133 HLKDKPTH---CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 Query: 199 SL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237 L TI+I TH + + G ++ + + ++F Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 126 bits (318), Expect = 7e-30 Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 17/213 (7%) Query: 11 KVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 VS Y G AL D++L I + L GPSG GK+T L+ L T G++ Sbjct: 6 NVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY-GALTPSR----GQVR 60 Query: 70 LDGKNI--YQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQI 126 + G+++ + + LR R+G+VFQ P +++Y+NVA + G + +I + Sbjct: 61 IAGEDVNRLRGR-QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK--EREIQRR 117 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 V +L++ L + + LSGG+QQRV IARA+ +P ++L DEP LDP + Sbjct: 118 VGAALRQVGL----EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 Query: 187 ASVEELIHEL-RESLTIVIVTHSMQQAARVSQR 218 + +L+ L + T+++ TH + RV+ R Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR 206 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 125 bits (315), Expect = 2e-29 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 19/225 (8%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S + K + +++L I L+GPSGCGK+T LR + ET D+ G I+LD Sbjct: 20 ISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDS----GRIMLD 74 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMS 130 G++I + V VFQ FP ++++NVA+G R+ A+I V + Sbjct: 75 GQDITHVPAE----NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA--AEITPRVMEA 128 Query: 131 LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD-PIATASV 189 L+ L E R H LSGGQQQRV IARA+ P+V+L+DE SALD + Sbjct: 129 LRMVQL-EEFAQRKPHQ---LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184 Query: 190 EELIHELRE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDT 233 EL R+ +T V VTH ++A +S R + G +E+D T Sbjct: 185 NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR-IEQDGT 228 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 124 bits (314), Expect = 2e-29 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 24/213 (11%) Query: 12 VSVCYGEKR--ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 +SV Y +R AL ++ +P AL+GPSG GKST L L + G I Sbjct: 326 LSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-----PTEGSIA 380 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 ++G + + D R ++ V Q P F +I +N+ L A +I Sbjct: 381 VNGVPLADADADS--WRDQIAWVPQHPFLFAGTIAENIR-------LARPDASDAEIRR- 430 Query: 130 SLKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 +L++A L V + + LSGGQ QR+ +ARA + ++L+DEP + LD Sbjct: 431 ALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490 Query: 183 PIATASVEELIHELRESLTIVIVTHSMQQAARV 215 A V E + L + T+++VTH + A R Sbjct: 491 AETEALVTEALRALAQGRTVLLVTHRLALAERA 523 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 121 bits (306), Expect = 1e-28 Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 18/234 (7%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGEIILDGKNIYQSSVD 81 + +L I + + L+G SG GKS+ LR +N +N V G+ +D + Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSID---VANCDAA 98 Query: 82 VVR-LRA-RVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 +R LR RV MVFQ+ P ++ +NVA+G + G+ +A+ + V+ L+ L Sbjct: 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMP--EAERRKRVDEQLELVGL-A 155 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIHELR 197 + D+ + LSGG QQRV +ARA A++ +++LMDEP SALDP I T +EL+ EL+ Sbjct: 156 QWADKKPGE---LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL-ELQ 211 Query: 198 ESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 L TI+ V+H + +A ++ R A+ G +++ +++ P++ D++ Sbjct: 212 AKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 119 bits (300), Expect = 5e-28 Identities = 74/212 (34%), Positives = 122/212 (57%), Gaps = 11/212 (5%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79 RALFDI+L++ + S TALIG +G GKST L+ LN + + + V G+I++ + Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS---KQ 76 Query: 80 VDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 ++ +R +VG+VFQ P F +++ +VA+GP+ G+ K ++I L+ L Sbjct: 77 KEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI--PKEKAEKIAAEKLEMVGLA 134 Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197 +E ++ + LSGGQ +RV IA LA+ PEV+++DEP + LDP A + +L + Sbjct: 135 DEFWEKSPFE---LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 Query: 198 ES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 +S T+V+VTH M A + + GH++ Sbjct: 192 QSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 119 bits (300), Expect = 7e-28 Identities = 85/249 (34%), Positives = 119/249 (47%), Gaps = 42/249 (16%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTG 66 + +G + L DI+L IP + AL+GPSG GK+T LR L G Sbjct: 6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS--------G 57 Query: 67 EIILDGKNIYQSSVDVVRLRAR---VGMVFQRPNPFPK-SIYDNVAYG----PRIHGLGN 118 I G DV RL AR VG VFQ F +++DN+A+G PR Sbjct: 58 HIRFHGT-------DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP-- 108 Query: 119 NKADIDQIVEMSLKKASLFNEVKDRLFHDA----SLLSGGQQQRVCIARALAVNPEVILM 174 N A I K L V+ L H A + LSGGQ+QRV +ARALAV P+++L+ Sbjct: 109 NAAAIKA------KVTQLLEMVQ--LAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 Query: 175 DEPCSALDPIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232 DEP ALD + + +L E L T V VTH ++A V+ R + G++ + Sbjct: 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 Query: 233 TDKMFTAPS 241 D+++ P+ Sbjct: 221 PDQVWREPA 229 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 118 bits (298), Expect = 1e-27 Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 24/219 (10%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96 L+GPSGCGK+T LR L E D +G I+LDG+++ V + MVFQ Sbjct: 1 LLGPSGCGKTTLLRLLAGF-EQPD----SGSIMLDGEDVTN----VPPHLRHINMVFQSY 51 Query: 97 NPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQ 155 FP ++ +NVA+G ++ + +A+I V +L+ L E DR H LSGGQ Sbjct: 52 ALFPHMTVEENVAFGLKMRKVP--RAEIKPRVLEALRLVQL-EEFADRKPHQ---LSGGQ 105 Query: 156 QQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE-----SLTIVIVTHSMQ 210 QQRV +ARAL P+++L+DEP SALD +++ EL+ +T V VTH + Sbjct: 106 QQRVALARALVFKPKILLLDEPLSALD---KKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 +A +S R A+ G + + ++++ P++ +I Sbjct: 163 EAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 117 bits (295), Expect = 3e-27 Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 24/214 (11%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S +G+K L D+NL I + + A+IG SG GKST L + + E D+ G++ L+ Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDS----GQVYLN 58 Query: 72 GKNI--YQSSVDVVRLRARVGMVFQRPNPFP----KSIYDNVAYGPRIHGLGNNKADIDQ 125 GK S R ++G +FQ F +++ +N+ G + +K + + Sbjct: 59 GKETPPLNSKKASKFRREKLGYLFQN---FALIENETVEENLDLG--LKYKKLSKKEKRE 113 Query: 126 IVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 + +L+K L ++K +++ LSGG+QQRV +ARA+ +P +IL DEP +LDP Sbjct: 114 KKKEALEKVGLNLKLKQKIYE----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 Query: 186 TASVEELIHEL-RESLTIVIVTHSM---QQAARV 215 V +L+ EL E TI+IVTH +QA RV Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 117 bits (294), Expect = 4e-27 Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 26/217 (11%) Query: 6 KMIS-NKVSVCYG--EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62 MI VS Y E AL +++ +I + A++G +G GKST + L + + Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS-- 63 Query: 63 VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNK 120 GEI +DG I + ++ +R ++G++FQ P N F ++ D++A+G L N K Sbjct: 64 ---GEIKIDGITISKENLK--EIRKKIGIIFQNPDNQFIGATVEDDIAFG-----LENKK 113 Query: 121 AD---IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEP 177 + I++ KK + +D L + LSGGQ+QRV IA LA+NPE+I+ DE Sbjct: 114 VPPKKMKDIIDDLAKKVGM----EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 Query: 178 CSALDPIATASVEELIHELRE--SLTIVIVTHSMQQA 212 S LDP +++++ +LR+ T++ +TH M +A Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA 206 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 113 bits (284), Expect = 5e-26 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 21/215 (9%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81 L ++NL I ++GPSG GKST + L R+ T + G++++DG ++ D Sbjct: 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQH----GQVLVDGVDLAI--AD 525 Query: 82 VVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS-LKKASLFNEV 140 LR ++G+V Q F +SI DN+A L N A + ++ + L A F Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISE 578 Query: 141 KDRLFH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 + ++ + LSGGQ+QR+ IARAL NP +++ DE SALD + A + + E Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 + T++I+ H + R R + G + E Sbjct: 639 ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAES 672 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 112 bits (282), Expect = 9e-26 Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 24/203 (11%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQSS- 79 D + +P VTA+ G SG GK+T +R L R +E GEI+L+G+ ++ S Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE--------GEIVLNGRTLFDSRK 66 Query: 80 -VDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 + + + R+G VFQ FP S+ N+ YG + + ++++E+ L L Sbjct: 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIEL-LGIGHLL 125 Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197 RL LSGG++QRV I RAL +P ++LMDEP +ALD + + L Sbjct: 126 ----GRLPGR---LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH 178 Query: 198 ESLTI--VIVTHSMQQAARVSQR 218 I + V+HS+Q+ R++ R Sbjct: 179 AEFGIPILYVSHSLQEVLRLADR 201 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 112 bits (282), Expect = 1e-25 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 18/224 (8%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 AL D++ + + A++G +G GKST + LN + + G ++L + ++ Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78 Query: 78 SSVDVVRLRARVGMVFQRP-NPFPKS-IYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 +R +VGMVFQ P N F + + D+VA+G L N +++VE + +A Sbjct: 79 -------VRRQVGMVFQNPDNQFVGATVQDDVAFG-----LENIGVPREEMVE-RVDQAL 125 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 ++D L + LSGGQ+QRV IA LA+ P++I++DE S LDP V E + + Sbjct: 126 RQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 Query: 196 LRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237 L+E +T++ +TH + +AA+ + R + + G ++EE +++F Sbjct: 186 LKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF 228 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 111 bits (278), Expect = 2e-25 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 15/228 (6%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY- 76 EK+ L +I+ ++ + S AL+G +G GKST ++ N + + +G I + G +I Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-----SGTITIAGYHITP 73 Query: 77 -QSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 + ++ +LR +V +VFQ P F ++ +V +GP+ G ++A + LKK Sbjct: 74 ETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL--KWLKK 131 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 L ++ LSGGQ +RV IA +A PE++ +DEP + LDP + +L Sbjct: 132 VGLSEDLIS---KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188 Query: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 + + T+++VTH+M A + + G L++ ++F+ Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 110 bits (276), Expect = 3e-25 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 20/251 (7%) Query: 6 KMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 + I K + G K D +L I + + ++G SG GKST +R LNR+ E Sbjct: 32 EQILEKTGLSLGVK----DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-----R 82 Query: 66 GEIILDGKNIYQSSVDVVR--LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD 122 G++++DG +I + S +R R ++ MVFQ P ++ DN A+G + G+ + Sbjct: 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN--AEE 140 Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 + +L++ L N + D LSGG +QRV +ARALA+NP+++LMDE SALD Sbjct: 141 RREKALDALRQVGLENYAHS--YPDE--LSGGMRQRVGLARALAINPDILLMDEAFSALD 196 Query: 183 P-IATASVEELIH-ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 P I T +EL+ + + TIV ++H + +A R+ R A+ G +V+ D++ P Sbjct: 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 Query: 241 SDQRTQDYIMG 251 ++ + + G Sbjct: 257 ANDYVRTFFRG 267 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 110 bits (277), Expect = 4e-25 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 17/227 (7%) Query: 7 MIS-NKVSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 MI +VS Y G + AL ++N I + + L+G SG GKSTFL+ + + + Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---- 56 Query: 64 FTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKA 121 G+I +G+++ + ++ LR +GMVFQ +++YDNVA+ RI +G Sbjct: 57 -RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI--IGVPPR 113 Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 D ++ V +L+K L + + LSGG+QQRV IARA+ P ++L DEP L Sbjct: 114 DANERVSAALEKVGL----EGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNL 169 Query: 182 DPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHL 227 DP + + L E R T+++ TH + R G L Sbjct: 170 DPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 110 bits (276), Expect = 4e-25 Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 17/201 (8%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSVDVVRLRARVGMVFQ 94 +L+G SG GKST R L R+ E+ GEII +G+ I S + LR + +FQ Sbjct: 354 SLVGESGSGKSTTGRALLRLVESQG-----GEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408 Query: 95 RP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150 P +P +++ D++ R+HGL KA ++ + L++ L E R H+ Sbjct: 409 DPYASLDP-RQTVGDSIMEPLRVHGLLPGKAAAARVAWL-LERVGLLPEHAWRYPHE--- 463 Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTI--VIVTHS 208 SGGQ+QR+CIARALA+NP+VI+ DE SALD + L+ +L+ I + ++H Sbjct: 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD 523 Query: 209 MQQAARVSQRAAMFHMGHLVE 229 M R+S R A+ ++G +VE Sbjct: 524 MAVVERISHRVAVMYLGQIVE 544 Score = 90.7 bits (225), Expect = 3e-19 Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 20/241 (8%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN------ 74 A+ +++ + + A++G SG GKS L R+ E V +++L ++ Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 Query: 75 IYQSSVDVVRLR-ARVGMVFQRP----NP-FPKSIYDNVAYGPRIH-GLGNNKADIDQIV 127 QS+ + +R A + M+FQ P NP F + + +A R+H G +A ++ Sbjct: 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT--VGEQIAESIRLHQGASREEAMVEAKR 148 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 + + + R H LSGG +QRV IA AL+ P V++ DEP +ALD A Sbjct: 149 MLDQVRIPEAQTILSRYPHQ---LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205 Query: 188 SVEELIHELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRT 245 + +LI L++ S+ ++ +TH M A ++ R + + G VE +++F AP T Sbjct: 206 QILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYT 265 Query: 246 Q 246 + Sbjct: 266 R 266 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 110 bits (276), Expect = 4e-25 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 17/229 (7%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 +K AL DI+ IP+ S TALIG +G GKST + +N + DN +I +DG + Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP--NSKITVDGITLTA 76 Query: 78 SSV-DVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 +V D+ R +VG+VFQ P N F ++ D+VA+G + + + +IV L Sbjct: 77 KTVWDI---REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE--MIKIVRDVLADV 131 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 + + + + + LSGGQ+QRV IA LAV P++I++DE S LDP + +LI Sbjct: 132 GMLDYIDS----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187 Query: 195 ELRE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 +L++ +LT++ +TH + +A Q + G L+ + ++F+ Sbjct: 188 KLKKKNNLTVISITHDIDEANMADQ-VLVLDDGKLLAQGSPVEIFSKVE 235 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 109 bits (275), Expect = 6e-25 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 16/207 (7%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-S 78 R L ++L I + + A++G SG GKST L L +DN +GE++ +G+++ + S Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG----GLDNPT-SGEVLFNGQSLSKLS 73 Query: 79 SVDVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 S + +LR + +G ++Q + P + +NVA P + G + + + L+K L Sbjct: 74 SNERAKLRNKKLGFIYQFHHLLPDFTALENVAM-PLLIG-KKSVKEAKERAYEMLEKVGL 131 Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 + R+ H S LSGG++QRV IARAL P ++L DEP LD + +L+ EL Sbjct: 132 ----EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 Query: 197 RESLTI--VIVTHSMQQAARVSQRAAM 221 L ++VTH ++ A ++ + M Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEM 214 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 109 bits (274), Expect = 8e-25 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 23/219 (10%) Query: 6 KMI-SNKVSVCY------GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET 58 +MI VS Y EK AL D+NL++ + ++G +G GKST + +N + Sbjct: 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP 62 Query: 59 IDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP-NPFPKSIYD-NVAYGPRIHGL 116 + G++ +DG + ++ +R + GMVFQ P N +I + +VA+GP L Sbjct: 63 SE-----GKVYVDGLDTSDEE-NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPE--NL 114 Query: 117 GNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176 G +I + V+ SLKK ++ E + H LLSGGQ+QRV IA LA+ PE I+ DE Sbjct: 115 GIPPEEIRERVDESLKKVGMY-EYRR---HAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170 Query: 177 PCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAA 213 P + LDP V I EL + +TI+++TH M++A Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV 209 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 109 bits (273), Expect = 9e-25 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 21/239 (8%) Query: 10 NKVSVCYG-----EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 + VS Y E +A+ D+N + Q A++G +G GKST ++ +N + + Sbjct: 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT----- 60 Query: 65 TGEIILDGKNIYQSSVD-VVR-LRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNK 120 TG + +D I + D +R +R R+GMVFQ P F ++ + +GP+ N K Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK-----NFK 115 Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 ++D++ + + +D + +SGGQ +++ I LA+NP++I++DEP + Sbjct: 116 MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175 Query: 181 LDPIATASVEELIHELR--ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237 LDP + V L+ L+ E+ TI++V+H M + AR + + G +V + ++F Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 108 bits (272), Expect = 1e-24 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 20/234 (8%) Query: 14 VCY---GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +CY G K AL +IN P+NS A+IGP+G GKST R N + + +G +++ Sbjct: 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-----SGSVLI 63 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 G+ I + ++ VR VG+VFQ P+ F ++ ++A+GP LG ++ + V Sbjct: 64 RGEPITKENIREVR--KFVGLVFQNPDDQIFSPTVEQDIAFGPI--NLGLDEETVAHRVS 119 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 +L L E++DR+ H LSGG+++RV IA +A+ P+V+++DEP + LDP Sbjct: 120 SALHMLGL-EELRDRVPHH---LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 Query: 189 VEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 + + +++L E+ +T++ TH + ++ + G +V +++F P Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 108 bits (272), Expect = 1e-24 Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 25/208 (12%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGE 67 + + YG K AL DINL + + ++GPSGCGK+T L I V G Sbjct: 5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-------NLIAGFVPYQHGS 57 Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQI 126 I LDGK + A G+VFQ P +++ DNVA+G ++ G+ K +I Sbjct: 58 ITLDGKPVEGPG-------AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE--KMQRLEI 108 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 LKK L K ++ LSGGQ+QRV IARALA NP+++L+DEP ALD Sbjct: 109 AHQMLKKVGLEGAEKRYIWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164 Query: 187 ASVEELIHEL--RESLTIVIVTHSMQQA 212 ++ L+ +L ++++TH +++A Sbjct: 165 EQMQTLLLKLWQETGKQVLLITHDIEEA 192 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 108 bits (271), Expect = 2e-24 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 30/225 (13%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YG+ +A+ +N K+ + V +GP+G GK+T +R L T + Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRML------------TTLLRPTSGTA 50 Query: 76 YQSSVDVVR----LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD--IDQIVE 128 + DVVR +R +G+V Q + + +N+ R++GL ++A+ ++++E Sbjct: 51 RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE 110 Query: 129 M-SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 + L +A DR SGG ++R+ IA +L P+V+ +DEP + LDP Sbjct: 111 LFELGEA------ADRP---VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161 Query: 188 SVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEED 231 ++ + I L+E +TI++ TH M++A ++ R A+ G ++ E Sbjct: 162 AIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 107 bits (270), Expect = 2e-24 Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 37/243 (15%) Query: 12 VSVCY-GEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 VS Y G++ AL +++L I A+IG G GKST L+ L + + + G ++ Sbjct: 469 VSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE-----GSVL 523 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 LDG +I Q +D LR +G V Q P F ++ DN+A LG AD ++I+ Sbjct: 524 LDGVDIRQ--IDPADLRRNIGYVPQDPRLFYGTLRDNIA-------LGAPYADDEEILR- 573 Query: 130 SLKKASLFNEVKDRLFHDASL----------LSGGQQQRVCIARALAVNPEVILMDEPCS 179 + + A + V+ H L LSGGQ+Q V +ARAL +P ++L+DEP S Sbjct: 574 AAELAGVTEFVRR---HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 Query: 180 ALDPIATASVEELIHELRESL---TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 A+D S E L+ L T+V+VTH V R + G +V + D++ Sbjct: 631 AMD---NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD-RIIVMDNGRIVADGPKDQV 686 Query: 237 FTA 239 A Sbjct: 687 LEA 689 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 107 bits (269), Expect = 3e-24 Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 24/203 (11%) Query: 16 YGE----KRALFDINLKIPQNSVTALIGPSGCGKSTFLR---CLNRMNETIDNCVFTGEI 68 YG K+ LFDINL+I + L GPSG GK+T L L + E G + Sbjct: 11 YGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE--------GSL 62 Query: 69 ILDGKNIYQSS-VDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQI 126 + G+ +Y +S ++V+LR +G +FQ N + NV + + + ++ Sbjct: 63 KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 M L+ L D L + LSGGQ+QRV IARAL P+++L DEP +ALD + Sbjct: 123 RAM-LEAVGL----GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 Query: 187 ASVEELIHEL-RE-SLTIVIVTH 207 V EL+ +L RE TI+IVTH Sbjct: 178 RDVVELMQKLAREQGCTILIVTH 200 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 106 bits (267), Expect = 4e-24 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 + L + + V AL+GPSG GKST L + + G+++LDG + Q Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-----GGQVLLDGVPLVQ 547 Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 D L +V +V Q P F S+ +N+AYG ++I M+ KA+ Sbjct: 548 --YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-------DTPDEEI--MAAAKAANA 596 Query: 138 NEVKDRLFHD--------ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 ++ + S LSGGQ+QR+ IARAL P V+++DE SALD A Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD----AEC 652 Query: 190 EELIHELRE--SLTIVIVTHSMQQAARVSQ 217 E+L+ E R S T++++ H + R Q Sbjct: 653 EQLLQESRSRASRTVLLIAHRLSTVERADQ 682 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 106 bits (266), Expect = 6e-24 Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 19/198 (9%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 L D++ IP+ T+++G +G GKST + + + + GEI + + I + Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS-----GEIFYNNQAI--TDD 76 Query: 81 DVVRLRARVGMVFQRP-NPFPKSI--YDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 + +LR +G+VFQ P N F SI YD VA+G H + ++ + + V +LK+ + Sbjct: 77 NFEKLRKHIGIVFQNPDNQFVGSIVKYD-VAFGLENHAVPYDE--MHRRVSEALKQVDML 133 Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR 197 +R ++ + LSGGQ+QRV IA LA+NP VI++DE S LDP A ++ +L+ +++ Sbjct: 134 ----ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189 Query: 198 ES--LTIVIVTHSMQQAA 213 +TI+ +TH + +A Sbjct: 190 SEHNITIISITHDLSEAM 207 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 106 bits (266), Expect = 6e-24 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 29/223 (13%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 ++ AL +NL + AL+GPSG GKST + L R + +G I+LDG ++ Q Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-----SGRILLDGVDLRQ 406 Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL- 136 LRAR+ +V Q P F S+ +N+ YG R D+ VE + + A Sbjct: 407 LDPAE--LRARMALVPQDPVLFAASVMENIRYG-RPDA-------TDEEVEAAARAAHAH 456 Query: 137 -FNEVKDRLFHD-----ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190 F + LSGGQ+QR+ IARA+ + ++L+DE SALD + V+ Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516 Query: 191 ELIHELRESLTIVIVTH---SMQQAARVSQRAAMFHMGHLVEE 230 + + L + T +I+ H ++ +A R+ + G +V + Sbjct: 517 QALETLMKGRTTLIIAHRLATVLKADRI----VVMDQGRIVAQ 555 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 106 bits (267), Expect = 7e-24 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 23/235 (9%) Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 M+ +SV G + L D++L + V A++GP+G GKST LR L + + + Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-----SGELSPDS 56 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKADID 124 GE+ L+G+ + + L R ++ Q + FP ++ + VA G R + D D Sbjct: 57 GEVRLNGRPL--ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMG-RAPHGLSRAED-D 112 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALA------VNPEVILMDEPC 178 +V +L + L + R + LSGG+QQRV +AR LA P +L+DEP Sbjct: 113 ALVAAALAQVDL-AHLAGRDYPQ---LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168 Query: 179 SALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEED 231 SALD V L +L L +++V H + AAR + R + H G LV + Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 106 bits (265), Expect = 7e-24 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 13/231 (5%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 L +++L I + L+G SGCGKST R L + + G + G+++Y Sbjct: 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA-----QGTVSFRGQDLY 76 Query: 77 Q-SSVDVVRLRARVGMVFQ-RPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 Q R V +VFQ P+ P+ + P H ++++ + L Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDM 136 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 L +E D+L LSGGQ QR+ IARALAV P++I++DE S LD + A + EL+ Sbjct: 137 VGLRSEDADKL---PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193 Query: 194 HELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242 +L+++ + +TH ++ QR A+ G +VEE D ++ + Sbjct: 194 RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 104 bits (261), Expect = 2e-23 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 34/240 (14%) Query: 10 NKVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGE 67 N VS YG L DI+L I NS T ++G SG GKST + L +GE Sbjct: 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR------SGE 530 Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127 I+L+G ++ +D LR + + Q P F SI +N+ G D+I Sbjct: 531 ILLNGFSL--KDIDRHTLRQFINYLPQEPYIFSGSILENLLLG------AKENVSQDEI- 581 Query: 128 EMSLKKASLFNEVKD-----------RLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176 A E+KD L + S +SGGQ+QR+ +ARAL + +V+++DE Sbjct: 582 ----WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 Query: 177 PCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 S LD I + + L++ TI+ V H + A + + + H G ++E+ D++ Sbjct: 638 STSNLDTITEKKIVNNLLNLQDK-TIIFVAHRLSVAKQSDKIIVLDH-GKIIEQGSHDEL 695 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 104 bits (262), Expect = 2e-23 Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 27/235 (11%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 + ++V YG+ L ++L++P+ VT ++G +G GK+T L+ L + V +G I Sbjct: 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIR 58 Query: 70 LDGKNI-----YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADI 123 LDG++I ++ R RA + V Q FP+ ++ +N+ G ++ Sbjct: 59 LDGEDITKLPPHE------RARAGIAYVPQGREIFPRLTVEENLLTGLAALP-RRSRKIP 111 Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183 D+I E LF +K+ L LSGGQQQ++ IARAL P+++L+DEP + P Sbjct: 112 DEIYE-------LFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164 Query: 184 IATASVEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 + +I LR + I++V + A ++ R + G +V D++ Sbjct: 165 SIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 104 bits (261), Expect = 3e-23 Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 15/244 (6%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 VS G + +I+L +P+ +TA++GPSG GK+T LR + GEI+ D Sbjct: 13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-----HGEILFD 67 Query: 72 GKNIYQ-SSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129 G+NI S + +R R+ M+FQ F +++DNVAY R H + V M Sbjct: 68 GENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH-TQLPAPLLHSTVMM 126 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L+ L K S LSGG +R +ARA+A+ P++I+ DEP DPI + Sbjct: 127 KLEAVGLRGAAKLM----PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182 Query: 190 EELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQD 247 +LI EL +L T V+V+H + + ++ A + +V + A D R + Sbjct: 183 VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-QANPDPRVRQ 241 Query: 248 YIMG 251 ++ G Sbjct: 242 FLDG 245 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 103 bits (259), Expect = 4e-23 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 19/207 (9%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81 L +NL I Q +LIG SGCGKST L ++ + + G +IL+GK I + D Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS-----GGVILEGKQITEPGPD 55 Query: 82 VVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEV 140 R+ +VFQ + P ++ +N+A +K++ IVE + L E Sbjct: 56 --RM-----VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGL-TEA 107 Query: 141 KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES- 199 D+ LSGG +QRV IARAL++ P+V+L+DEP ALD + +++E + ++ E Sbjct: 108 ADKRPGQ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 Query: 200 -LTIVIVTHSMQQAARVSQRAAMFHMG 225 +T+++VTH + +A +S R M G Sbjct: 165 RVTVLMVTHDVDEALLLSDRVVMLTNG 191 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 102 bits (256), Expect = 8e-23 Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 22/238 (9%) Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL---NRMNETIDNC 62 M+S +KVS YG+ +AL +++L I Q + LIG +G GK+T L L R Sbjct: 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS----- 59 Query: 63 VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKA 121 G I+ DGK+I + +R V +V + F + ++ +N+A +G A Sbjct: 60 ---GRIVFDGKDITDWQTAKI-MREAVAIVPEGRRVFSRMTVEENLA-------MGGFFA 108 Query: 122 DIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 + DQ E LF + +R A +SGG+QQ + I RAL P ++L+DEP L Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168 Query: 182 DPIATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238 PI + + I +LR + +TI +V + QA +++ R + GH+V ED D + Sbjct: 169 APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 102 bits (257), Expect = 8e-23 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 21/232 (9%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF--TGEIILDGKNIYQSSVD 81 D+NL + + V AL+G SG GKS L CL + + + +GEI+LDG+ + S Sbjct: 4 DLNLSLKRGEVLALVGESGSGKS--LTCLAILG-LLPPGLTQTSGEILLDGRPLLPLS-- 58 Query: 82 VVRLRAR-VGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 +R R + + Q P NP ++ ++ R G + +A I+E +L+ L Sbjct: 59 ---IRGRHIATIMQNPRTAFNPL-FTMGNHAIETLRSLGKLSKQAR-ALILE-ALEAVGL 112 Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 + ++ L LSGG QRV IA AL + P ++ DEP + LD + A V +L+ EL Sbjct: 113 -PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171 Query: 197 RE--SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 R+ I+++TH + AR++ A+ G +VE ++F P + T+ Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 102 bits (256), Expect = 9e-23 Identities = 73/208 (35%), Positives = 102/208 (49%), Gaps = 26/208 (12%) Query: 13 SVC--YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +V YG+ DINL I + +GPSGCGKST LR + + E I +G++ + Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-EDIT----SGDLFI 62 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129 K + DV VGMVFQ +P S+ +N+++G ++ G K +I+Q V Sbjct: 63 GEKRMN----DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--KKEEINQRVNQ 116 Query: 130 S---LKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 L+ A L DR LSGGQ+QRV I R L P V L+DEP S LD Sbjct: 117 VAEVLQLAHLL----DRKPKA---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 Query: 187 ASVEELIHELRESL--TIVIVTHSMQQA 212 + I L + L T++ VTH +A Sbjct: 170 VQMRIEISRLHKRLGRTMIYVTHDQVEA 197 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 102 bits (256), Expect = 9e-23 Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 17/221 (7%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 + L +++L + AL+G SGCGKST R L + E+ G + G+ + Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESPSQ----GNVSWRGEPLA 77 Query: 77 QSSVDVVR-LRARVGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSL 131 + + + R + MVFQ NP K++ + + P H L +KA+ L Sbjct: 78 KLNRAQRKAFRRDIQMVFQDSISAVNP-RKTVREIIRE-PLRHLLSLDKAERLARASEML 135 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 + L + V D+ LSGGQ QRVC+ARALAV P+++++DE S LD + A V Sbjct: 136 RAVDLDDSVLDKR---PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR 192 Query: 192 LIHELRESLTI--VIVTHSMQQAARVSQRAAMFHMGHLVEE 230 L+ +L++ + +TH ++ R QR + G +VE Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 102 bits (255), Expect = 1e-22 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 41/244 (16%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM-------------NETIDNCVF 64 E +AL +++++I Q A+IG +G GK+TF+ LN + +E Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 Query: 65 TGEIILDGKNIYQSSVDVVR----LRARVGMVFQ--RPNPFPKSIYDNVAYGPRIHGLGN 118 E +L+ I ++ ++ +R RVG+VFQ F ++I ++ +GP G+ Sbjct: 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK 138 Query: 119 NKA-----DIDQIV---EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170 +A ++V E L++ S F LSGGQ++RV +A LA+ P+ Sbjct: 139 EEAKKRAAKYIELVGLDESYLQR-SPFE------------LSGGQKRRVALAGILAMEPD 185 Query: 171 VILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVE 229 ++ DEP + LDP + E+ L + TI++VTH + ++R F G +++ Sbjct: 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK 245 Query: 230 EDDT 233 + DT Sbjct: 246 DGDT 249 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 102 bits (255), Expect = 1e-22 Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 18/232 (7%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 A+ D++L I + + AL+G SGCGKST LR L + G+I+LDG ++ Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT-----AGQIMLDGVDL----S 84 Query: 81 DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNE 139 V + + M+FQ FP ++ N+A+G + L KA+I V L + E Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP--KAEIASRVNEMLGLVHM-QE 141 Query: 140 VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE-ELIHEL-R 197 R H LSGGQ+QRV +AR+LA P+++L+DEP ALD ++ E++ L R Sbjct: 142 FAKRKPHQ---LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198 Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 +T V+VTH ++A ++ R A+ + G V+ + ++++ P+ + + ++I Sbjct: 199 VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 101 bits (254), Expect = 2e-22 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 38/233 (16%) Query: 12 VSVCYGEK--RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 V+ Y L D++L+I A++GPSG GKST LR L ET + +G + Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ETPE----SGSVF 511 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 DG+++ + +DV +R ++G+V Q SI++N+A G +D+ E Sbjct: 512 YDGQDL--AGLDVQAVRRQLGVVLQNGRLMSGSIFENIA--------GGAPLTLDEAWE- 560 Query: 130 SLKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 + + A L +++ + LSGGQ+QR+ IARAL P ++L DE SALD Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620 Query: 183 PIATASVEELIHELRESLTIVIVTHSMQQAARVS-----QRAAMFHMGHLVEE 230 A V E + L+ + IVI A R+S R + G +V++ Sbjct: 621 NRTQAIVSESLERLKVT-RIVI-------AHRLSTIRNADRIYVLDAGRVVQQ 665 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 101 bits (252), Expect = 2e-22 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 22/244 (9%) Query: 7 MISNKVSVCYGEK-----RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM--NETI 59 +I + VS Y +K +AL + +L +N VT +IG +G GKST ++ N + +ET Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66 Query: 60 DNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLG 117 V I + K I + V RLR +G+VFQ P F ++I ++A+GP ++ LG Sbjct: 67 QTIVGDYAIPANLKKIKE----VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP-VN-LG 120 Query: 118 NNKADIDQIVEMSLKKASLFNE-VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176 NK + + V LK L + VK F LSGGQ++RV +A +A++ +++DE Sbjct: 121 ENKQEAYKKVPELLKLVQLPEDYVKRSPFE----LSGGQKRRVALAGIIAMDGNTLVLDE 176 Query: 177 PCSALDPIATASVEELIHELRESLT--IVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234 P LDP L L + I++VTH+M Q R++ + H G ++ Sbjct: 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 Query: 235 KMFT 238 ++F+ Sbjct: 237 EIFS 240 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 100 bits (252), Expect = 2e-22 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 24/205 (11%) Query: 12 VSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +S Y G L ++L +P A++GPSG GKST L L + + + GE+ L Sbjct: 340 LSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ-----GEVTL 394 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130 DG S LR R+ + Q + F ++ DN+ LG A D+ + + Sbjct: 395 DG---VSVSSLQDELRRRISVFAQDAHLFDTTVRDNLR-------LGRPDAT-DEELWAA 443 Query: 131 LKKASLFNEVKDR-------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183 L++ L + ++ L + LSGG++QR+ +ARAL + ++L+DEP LD Sbjct: 444 LERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 503 Query: 184 IATASVEELIHELRESLTIVIVTHS 208 + + E + T+V++TH Sbjct: 504 GTESELLEDLLAALSGKTVVVITHH 528 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 100 bits (251), Expect = 3e-22 Identities = 69/222 (31%), Positives = 126/222 (56%), Gaps = 18/222 (8%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 ++ I + ++IG +G GKST R ++ + E F G++ +DG+ + ++ +V Sbjct: 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGELL--TAENVWN 78 Query: 85 LRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKD 142 LR ++GMVFQ P N F ++ D+VA+G G+ + ++ + V+ +L ++ + K Sbjct: 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI--PREEMIKRVDEALLAVNML-DFKT 135 Query: 143 RLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--L 200 R + + LSGGQ+QRV +A +A+ PE+I++DE S LDP + +IHE++E L Sbjct: 136 R---EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192 Query: 201 TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242 T++ +TH + +AA S R + G +++E ++F D Sbjct: 193 TVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSED 233 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 100 bits (252), Expect = 3e-22 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 22/222 (9%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S YG +RAL D++ + AL+GP+G GKST L R+ G+I + Sbjct: 7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-----EGQISVA 61 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD--IDQIVE 128 G ++ ++ + AR+G+VFQ+P S+ N+ Y +HGL +A I + Sbjct: 62 GHDLRRAPRAAL---ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAAL-- 116 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 L + L +R L+GG ++RV IARAL P ++L+DEP LDP + A+ Sbjct: 117 --LARLGL----AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170 Query: 189 VEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 + + L + L+++ TH + + R + H G ++ Sbjct: 171 IVAHVRALCRDQGLSVLWATHLVDE-IEADDRLVVLHRGRVL 211 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 100 bits (251), Expect = 3e-22 Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 28/217 (12%) Query: 12 VSVCYG--EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 V+ Y ++ AL I+L I AL+G SG GKST + + R E D +G+I+ Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PD----SGQIL 390 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 LDG ++ ++ LR +V +V Q F +I +N+AYG ++A+I++ + Sbjct: 391 LDGHDLADYTLA--SLRRQVALVSQDVVLFNDTIANNIAYG---RTEQADRAEIERALAA 445 Query: 130 SLKKASLFNEVKDRL---FH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 + + + D+L + LLSGGQ+QR+ IARAL + ++++DE SAL Sbjct: 446 AYAQ-----DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSAL 500 Query: 182 DPIATASVEELIHELRESLTIVIVTH---SMQQAARV 215 D + V+ + L + T +++ H ++++A R+ Sbjct: 501 DNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRI 537 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 100 bits (251), Expect = 4e-22 Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 27/212 (12%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 N VS YGE+ L ++L IP A++G SGCGKST LR L + + + Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP------SAGEL 69 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVE 128 L G + + R ++FQ P K + DNV G + G + Q Sbjct: 70 LAGTAPLAEAREDTR------LMFQDARLLPWKKVIDNVGLGLK----GQWRDAALQ--- 116 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 +L L DR + LSGGQ+QRV +ARAL P ++L+DEP ALD + Sbjct: 117 -ALAAVGL----ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171 Query: 189 VEELIHEL--RESLTIVIVTHSMQQAARVSQR 218 +++LI L + T+++VTH + +A ++ R Sbjct: 172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 99.7 bits (249), Expect = 6e-22 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 23/205 (11%) Query: 12 VSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 V+ Y E AL +IN KIP AL+G SG GKST L R + + GEI+ Sbjct: 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-----IDEGEIL 401 Query: 70 LDGKNI--YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127 LDG ++ Y + LR +V +V Q + F +I +N+AY ++ I++ Sbjct: 402 LDGHDLRDYTLA----SLRNQVALVSQNVHLFNDTIANNIAYARTEQ---YSREQIEEAA 454 Query: 128 EMSLKKASLFNEVKDRLFH-----DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 M+ A F D + LLSGGQ+QR+ IARAL + ++++DE SALD Sbjct: 455 RMA--YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 Query: 183 PIATASVEELIHELRESLTIVIVTH 207 + +++ + EL+++ T +++ H Sbjct: 513 TESERAIQAALDELQKNRTSLVIAH 537 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 98.5 bits (246), Expect = 1e-21 Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 32/230 (13%) Query: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF---TGE 67 VS Y R + D++ + A++GP+G GKST + L R VF +G Sbjct: 340 VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR--------VFDPQSGR 391 Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKAD-IDQI 126 I++DG +I +V LR + +VFQ F +SI DN+ G + D D+ Sbjct: 392 ILIDGTDI--RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG---------RPDATDEE 440 Query: 127 VEMSLKKASL--FNEVKDRLF-----HDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179 + + ++A F E K + LSGG++QR+ IARAL +P ++++DE S Sbjct: 441 MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATS 500 Query: 180 ALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVE 229 ALD A V+ + EL + T I+ H + R + R +F G +VE Sbjct: 501 ALDVETEAKVKAALDELMKGRTTFIIAHRL-STVRNADRILVFDNGRVVE 549 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 98.6 bits (246), Expect = 1e-21 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 16/234 (6%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY-QS 78 +A+ + L++ + ++G SGCGKSTF R + + + D GE+ GK++ Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD-----GEVAWLGKDLLGMK 89 Query: 79 SVDVVRLRARVGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 + +R+ + M+FQ P NP +I + +A R + ++ ++ V+ + K Sbjct: 90 DDEWRAVRSDIQMIFQDPLASLNP-RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV 148 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 L + +R H+ SGGQ QR+ IARAL + P++I+ DEP SALD A V L+ Sbjct: 149 GLLPNLINRYPHE---FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQ 205 Query: 195 EL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 +L RE L+++ + H + +S R + ++GH VE D+++ P T+ Sbjct: 206 QLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 97.2 bits (243), Expect = 4e-21 Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 27/208 (12%) Query: 10 NKVSVCY--GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGE 67 N VS Y + L ++L+I AL+G +GCGKST L+ L R + GE Sbjct: 342 NNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-----PQQGE 396 Query: 68 IILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV 127 I+L+G+ I + LR + +V QR + F ++ DN+ L A + ++ Sbjct: 397 ILLNGQPI--ADYSEAALRQAISVVSQRVHLFSATLRDNLL-------LAAPNASDEALI 447 Query: 128 EMSLKKASLFN--EVKDRLFHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCS 179 E+ L++ L E L +A L LSGG+Q+R+ IARAL + ++L+DEP Sbjct: 448 EV-LQQVGLEKLLEDDKGL--NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504 Query: 180 ALDPIATASVEELIHELRESLTIVIVTH 207 LD + EL+ E ++ T++++TH Sbjct: 505 GLDAETERQILELLAEHAQNKTVLMITH 532 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 95.4 bits (238), Expect = 1e-20 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 17/218 (7%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR-LRARVGMVFQ 94 A++G SGCGKST R L M ET GE+ G+++ ++ + + LR ++ +VFQ Sbjct: 45 AVVGESGCGKSTLARLLT-MIETPT----GGELYYQGQDLLKADPEAQKLLRQKIQIVFQ 99 Query: 95 RP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150 P NP K + + I+ + ++ + M + K L E DR H + Sbjct: 100 NPYGSLNP-RKKVGQILEEPLLINTSLSAAERREKALAM-MAKVGLRPEHYDRYPH---M 154 Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--LTIVIVTHS 208 SGGQ+QR+ IARAL ++P+V++ DEP SALD A V L+ +L++ L+ V ++H Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 + ++ + ++G VE+ +++F P TQ Sbjct: 215 LSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 95.1 bits (236), Expect = 2e-20 Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 20/237 (8%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 ++++ YG+ ++ ++IP TA+IGP+GCGKST LR L+R+ G + Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH-----GHVW 65 Query: 70 LDGKNIYQ-SSVDVVRLRARVGMVFQRP-NPFPKSIYDNVAYGPRIHG---LGNNKADID 124 LDG++I +S +V R R+G++ Q P ++ + VA G H K D Sbjct: 66 LDGEHIQHYASKEVAR---RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-- 120 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 E ++ KA + LSGGQ+QR IA LA ++L+DEP + LD Sbjct: 121 ---EEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 Query: 185 ATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 + EL+ EL + T+ V H + QA R + G +V + ++ TA Sbjct: 178 HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 95.0 bits (236), Expect = 2e-20 Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 22/198 (11%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 + +FD++ + A++GP+G GK+T + L R+ + G+I++DG +I + Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-----VGQILIDGIDI--N 400 Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 +V LR + VFQ F +SI +N+ LG A +++ E + K A+ + Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIR-------LGREGATDEEVYEAA-KAAAAHD 452 Query: 139 EVKDRLF-------HDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 + R + LSGG++QR+ IARA+ N ++++DE SALD A V+ Sbjct: 453 FILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN 512 Query: 192 LIHELRESLTIVIVTHSM 209 I LR++ T I+ H + Sbjct: 513 AIDALRKNRTTFIIAHRL 530 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 94.6 bits (236), Expect = 2e-20 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 24/191 (12%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83 + +L + AL+G SG GKST + + + + ++GEI+ DG + +V Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----WSGEILFDGIPREEIPREV- 550 Query: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143 L V MV Q F ++ DN+ L + +V + K A++ + + R Sbjct: 551 -LANSVAMVDQDIFLFEGTVRDNLT-------LWDPTIPDADLVR-ACKDAAIHDVITSR 601 Query: 144 -------LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 L + LSGGQ+QR+ IARAL NP ++++DE SALDP +++ + Sbjct: 602 PGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR-- 659 Query: 197 RESLTIVIVTH 207 R T +IV H Sbjct: 660 RRGCTCIIVAH 670 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 94.4 bits (235), Expect = 2e-20 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 23/240 (9%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKST----FLRCLNRMNETIDNCVFTGEIILDG 72 + +I+ + L+G SG GKST LR +N GEI DG Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS----------QGEIWFDG 346 Query: 73 KNIYQ-SSVDVVRLRARVGMVFQRPNPF--PK-SIYDNVAYGPRIHGLGNNKADIDQIVE 128 + ++ + ++ +R R+ +VFQ PN P+ ++ + G R+H + A +Q V Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 +++ L E + R + SGGQ+QR+ IARAL + P +I++DEP S+LD A Sbjct: 407 AVMEEVGLDPETRHRY---PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463 Query: 189 VEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 + L+ L++ L + ++H + + + + G +VE+ D +++F AP + T+ Sbjct: 464 ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTR 523 Score = 82.1 bits (203), Expect = 1e-16 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 19/235 (8%) Query: 24 DINLKIPQNSVTALIGPSGCGKS-TFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV 82 D++L+I AL+G SG GKS T L L R+ + +G+I G+++ +S Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSIL-RLLPSPPVVYPSGDIRFHGESLLHASEQT 85 Query: 83 VR-LRA-RVGMVFQRP----NPF---PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 +R +R ++ M+FQ P NP K +Y+ ++ +H +A +I+ L + Sbjct: 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS----LHRGMRREAARGEILN-CLDR 140 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 + K RL LSGG++QRV IA AL PE+++ DEP +ALD A + +L+ Sbjct: 141 VGIRQAAK-RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLL 199 Query: 194 HELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 EL++ L ++ +TH++ +++ R A+ G VE++ +F+AP+ TQ Sbjct: 200 RELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQ 254 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 94.5 bits (235), Expect = 2e-20 Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 17/235 (7%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK---- 73 E AL +I+ +N + +IG SG GKST + N + ++ + G+I + K Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 Query: 74 ----NIYQSSV-DVVRLRARVGMVFQRP--NPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126 N Y + + LR RV MVFQ P F +I ++ +GP LG K++ ++ Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV--ALGVKKSEAKKL 155 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 + L K L + +R LSGGQ++RV IA LA+ PE+++ DEP + LDP Sbjct: 156 AKFYLNKMGLDDSYLER---SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212 Query: 187 ASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 + +LI + + + T+ ++TH+M+ V+ + G +++ ++FT Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 94.6 bits (235), Expect = 2e-20 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 19/227 (8%) Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKST-FLRCLNRMNETIDNCVFT 65 + + ++ Y +R + D++L + + L+GP+G GK+T F + + Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD------A 57 Query: 66 GEIILDGKNIYQSSVDVVRLRAR--VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD 122 G II+D ++I S+ + RAR +G + Q + F + S+YDN+ +I + + Sbjct: 58 GNIIIDDEDI---SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR 114 Query: 123 IDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 D+ E L + ++D + LSGG+++RV IARALA NP+ IL+DEP + +D Sbjct: 115 EDRANE--LMEEFHIEHLRDSM---GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169 Query: 183 PIATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 PI+ ++ +I LR+S L ++I H++++ V +RA + GHL+ Sbjct: 170 PISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 93.6 bits (233), Expect = 4e-20 Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 22/214 (10%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTF---LRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 L I+L I + A++G SG GKST L CL++ +G + G+++ Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--------SGTYRVAGQDVATL 75 Query: 79 SVD-VVRLR-ARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 D + +LR G +FQR + + NV P ++ G + + L++ Sbjct: 76 DADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV-PAVYA-GLERKQRLLRAQELLQRLG 133 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 L +DR+ + S LSGGQQQRV IARAL +VIL DEP ALD + V ++H+ Sbjct: 134 L----EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189 Query: 196 LRE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 LR+ T++IVTH Q AA+ ++R G +V Sbjct: 190 LRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 93.0 bits (231), Expect = 7e-20 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 17/214 (7%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSV 80 L +++ I + + A++G SG GKST L L ++ +G++I +G+ + + SS Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-----SGDVIFNGQPMSKLSSA 79 Query: 81 DVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 LR + +G ++Q + P + +NVA P + G A+I+ L L Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAM-PLLIG-KKKPAEINSRALEMLAAVGL-- 135 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196 + R H S LSGG++QRV IARAL NP ++L DEP LD S+ +L+ EL Sbjct: 136 --EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 Query: 197 RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 + ++VTH +Q A R+S++ M G L E Sbjct: 194 LQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTAE 226 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 92.5 bits (230), Expect = 9e-20 Identities = 65/202 (32%), Positives = 113/202 (55%), Gaps = 21/202 (10%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 EK L D++ + Q ++IG +G GKST +R ++ + E +G+II+DG + Sbjct: 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-----SGQIIIDGDLL-- 71 Query: 78 SSVDVVRLRARVGMVFQRP-NPF-PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 + +V +R ++GMVFQ P N F ++ D+VA+G L N +++ E + Sbjct: 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG-----LENKGIPHEEMKERVNEALE 126 Query: 136 L--FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 L + K+R + + LSGGQ+QRV IA A+A+ P++I++DE S LDP + + I Sbjct: 127 LVGMQDFKER---EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 Query: 194 HELRES--LTIVIVTHSMQQAA 213 +R+ +T++ +TH + + A Sbjct: 184 KGIRDDYQMTVISITHDLDEVA 205 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 92.6 bits (230), Expect = 9e-20 Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 15/226 (6%) Query: 11 KVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 VS Y G ++AL + + + L G SG GKST L+ + + G+I Sbjct: 6 HVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-----AGKIW 60 Query: 70 LDGKNIYQ-SSVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYGPRIHGLGNNKADIDQIV 127 G +I + + +V LR ++GM+FQ + +++YDNVA P I G + DI + V Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI-PLIIA-GASGDDIRRRV 118 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 +L K L ++ K+ LSGG+QQRV IARA+ P V+L DEP LD + Sbjct: 119 SAALDKVGLLDKAKNFPIQ----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232 + L E R +T+++ TH + +R S R GHL Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 92.4 bits (229), Expect = 1e-19 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 26/233 (11%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 K++ + + +AL ++L I + AL+GPSG GKST LR L+ + T D I L Sbjct: 9 KLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-ITGDKSA-GSHIEL 66 Query: 71 DGKNIYQS---SVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNN------- 119 G+ + + + D+ + RA G +FQ+ N + S+ +NV G LG+ Sbjct: 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG----ALGSTPFWRTCF 122 Query: 120 ---KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176 + Q +L + + + R+ S LSGGQQQRV IARAL +VIL DE Sbjct: 123 SWFTREQKQRALQALTRVGMVHFAHQRV----STLSGGQQQRVAIARALMQQAKVILADE 178 Query: 177 PCSALDPIATASVEELIHELRES--LTIVIVTHSMQQAARVSQRAAMFHMGHL 227 P ++LDP + V + + ++ ++ +T+V+ H + A R +R GH+ Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 91.8 bits (228), Expect = 1e-19 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 20/224 (8%) Query: 14 VCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK 73 V Y + + +L + + A++GPSG GKST L + E +G I ++ + Sbjct: 6 VRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-----SGSIKVNDQ 60 Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIH-GLGNNKADIDQIVEMSL 131 + + + V M+FQ N F ++ N+ G +H GL N +++V+ + Sbjct: 61 SHTGLA----PYQRPVSMLFQENNLFAHLTVRQNIGLG--LHPGLKLNAEQQEKVVDAAQ 114 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 + + DRL LSGGQ+QRV +AR L ++L+DEP SALDP+ + Sbjct: 115 QVG--IADYLDRL---PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169 Query: 192 LIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDT 233 L+ +L T+++VTH + A ++ + A+ G + D Sbjct: 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSDC 213 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 91.8 bits (229), Expect = 2e-19 Identities = 70/202 (34%), Positives = 97/202 (48%), Gaps = 42/202 (20%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMN---ETIDNCVFTGEIILDGKNIYQ 77 + I+L + L+GPSGCGKST LR M E I +GEI + G+ Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLR----MVAGLERIT----SGEIWIGGRV--- 67 Query: 78 SSVDVVRLRAR-VGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 V+ + R + MVFQ +P S+ +N+AYG +I G+ KA+I++ V + + Sbjct: 68 --VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP--KAEIEERVAEAARILE 123 Query: 136 L--FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS----- 188 L + K R LSGGQ+QRV + RA+ P V L DEP S LD A Sbjct: 124 LEPLLDRKPRE------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD----AKLRVQM 173 Query: 189 -VEELIHELRESL--TIVIVTH 207 +E I L L T + VTH Sbjct: 174 RLE--IQRLHRRLKTTSLYVTH 193 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 91.5 bits (228), Expect = 2e-19 Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 42/221 (19%) Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQSS 79 +NL +P +TA+ G SG GK++ + L R + G I+L+G+ ++ + Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK--------GRIVLNGRVLFDAE 66 Query: 80 VDV---VRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKAS 135 + R R+G VFQ FP + N+ YG + A D+IV + L Sbjct: 67 KGICLPPEKR-RIGYVFQDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVAL-LGIEP 120 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD--------PIATA 187 L DR LSGG++QRV I RAL PE++LMDEP ++LD P Sbjct: 121 LL----DRYPGS---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY--- 170 Query: 188 SVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 +E L E+ + I+ V+HS+ + R++ R + G + Sbjct: 171 -LERLAREIN--IPILYVSHSLDEILRLADRVVVLEQGKVK 208 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 89.9 bits (223), Expect = 5e-19 Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 17/223 (7%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +VS G + + +++ P S+T L+GP+G GKST LR L G + L Sbjct: 6 RVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA-----GTVDL 60 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYG--PRIHGLGNNKADIDQI 126 G +++ S R RAR + ++ + P ++ D VA G P + + Sbjct: 61 AGVDLHGLSR---RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 V+ +L + L + + DR D S LSGG++QRV +ARALA P+++L+DEP + LD A Sbjct: 118 VDRALARTEL-SHLADR---DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 Query: 187 ASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLV 228 L+ EL +T+V H + AA + G +V Sbjct: 174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 89.5 bits (223), Expect = 7e-19 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 26/222 (11%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 K +N +P AL+GPSG GK++ L N + + G + ++G I Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLL------NALLGFLPYQGSLKING--IELR 414 Query: 79 SVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 +D R + V Q P ++ DNV LGN A +Q+ + +L+ A + + Sbjct: 415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVL-------LGNPDASDEQL-QQALENAWV-S 465 Query: 139 EVKDRLFH--------DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190 E L A+ LS GQ QR+ +ARAL +++L+DEP ++LD + V Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDD 232 + ++ T ++VTH ++ A+ Q M G +V++ D Sbjct: 526 QALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD-GQIVQQGD 566 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 87.6 bits (218), Expect = 3e-18 Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 38/258 (14%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT----- 65 +SV + +AL D++L + + +IGP+G GK+T + D V T Sbjct: 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM----------D--VITGKTRP 54 Query: 66 --GEIILDGKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDN----VAYGPRIHGL- 116 G ++ G ++ + + ++ RA +G FQ+P F ++++N + + Sbjct: 55 DEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL 112 Query: 117 --GNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILM 174 + + D+I E+ L+ L +E DRL A LLS GQ+Q + I L +P+++L+ Sbjct: 113 FFRLSAEEKDRIEEV-LETIGLADEA-DRL---AGLLSHGQKQWLEIGMLLMQDPKLLLL 167 Query: 175 DEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234 DEP + + T EL+ L ++V+V H M+ ++ + + H G ++ E D Sbjct: 168 DEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 Query: 235 KMFTAPSDQRTQDYIMGR 252 ++ +D R + +GR Sbjct: 228 QV---QADPRVIEVYLGR 242 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 87.5 bits (217), Expect = 3e-18 Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 29/229 (12%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRM-NETIDNCVFTGEIIL 70 +S +G++ A+ +I+L +P+NSV L+GP+G GKST L+ + + T +GEII Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT------SGEIIF 59 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHG--LGNNKADIDQIV 127 DG + + ++G + + P + + +N+ ++H LG + ID++ Sbjct: 60 DGHPWTRKDLH------KIGSLIESPPLYENLTARENL----KVHTTLLGLPDSRIDEV- 108 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 L L N K + A S G +QR+ IA AL +P+++++DEP + LDPI Sbjct: 109 ---LNIVDLTNTGKKK----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQ 161 Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDK 235 + ELI + +T+++ +H + + +++ + G L + +K Sbjct: 162 ELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 86.8 bits (215), Expect = 5e-18 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 24/221 (10%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 YG+K + ++ + + L+GP+G GK+T LR L + G I L G+ + Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-----AGSISLCGEPV 71 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 + R RVG+V Q N P ++ +N+ R GL + A +V L+ A Sbjct: 72 PSRAR---HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL--SAAAARALVPPLLEFA 126 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 L N+ ++ LSGG ++R+ +ARAL +P+V+++DEP + LDP A L+ Sbjct: 127 KLENKADAKV----GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA----RHLMW 178 Query: 195 ELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 E SL TI++ TH M++A R+ R + G + E Sbjct: 179 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 86.7 bits (215), Expect = 5e-18 Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 16/201 (7%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 V G+ + L +I+ + + GPSGCGKST L+ + + +G ++ Sbjct: 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-----SGTLL 65 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 +G++I S++ R +V Q P F ++YDN+ + +I N + D ++ Sbjct: 66 FEGEDI--STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR---NQQPDPAIFLD- 119 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L++ +L + + + + LSGG++QR+ + R L P+V+L+DE SALD +V Sbjct: 120 DLERFALPDTILTKNIAE---LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176 Query: 190 EELIHELRESLTIVI--VTHS 208 E+IH I + VTH Sbjct: 177 NEIIHRYVREQNIAVLWVTHD 197 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 86.4 bits (214), Expect = 6e-18 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 26/226 (11%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 VS YG+K + ++ + L+GP+G GKST R + M G+I + Sbjct: 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-----SPDAGKITVL 101 Query: 72 GKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129 G + RL RAR+G+V Q N + ++ +N+ R G+ + +I+ ++ Sbjct: 102 GVPV----PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM--STREIEAVIPS 155 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L+ A L ++ R+ S LSGG ++R+ +ARAL +P+++++DEP + LDP A Sbjct: 156 LLEFARLESKADARV----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA---- 207 Query: 190 EELIHELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 LI E SL TI++ TH M++A R+ R + G + E Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 85.9 bits (213), Expect = 9e-18 Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 36/259 (13%) Query: 10 NKVSVCYGEKRALFD----INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 +K+SV +G++ A F I+ + Q V ++G SG GKS + L M ID + Sbjct: 7 DKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKS--VSSLAIMG-LID---YP 60 Query: 66 GEII-----LDGKNIYQSSVDVVR--LRARVGMVFQRP----NPFPKSIYDNVAYGPRIH 114 G ++ +G+++ + S R + A V M+FQ P NP + + ++H Sbjct: 61 GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGF-QIMEAIKVH 119 Query: 115 GLGNNKADIDQIVEMSLKKASLFNEV-----KDRLFHDASLLSGGQQQRVCIARALAVNP 169 GN K + ++ L N+V RL LSGG QRV IA A+A P Sbjct: 120 QGGNKKTRRQRAID-------LLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRP 172 Query: 170 EVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHL 227 ++++ DEP +ALD A + EL+ EL +E++ +V++TH + A + + + + G + Sbjct: 173 KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232 Query: 228 VEEDDTDKMFTAPSDQRTQ 246 VE +F AP TQ Sbjct: 233 VETGKAHDIFRAPRHPYTQ 251 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 85.8 bits (213), Expect = 1e-17 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 35/243 (14%) Query: 7 MIS-NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV-- 63 M+ ++ Y FD L + + A++GPSG GKST L N + Sbjct: 1 MLKLTDITWLYHHLPMRFD--LTVERGERVAILGPSGAGKSTLL-----------NLIAG 47 Query: 64 F----TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIH-GLG 117 F +G + L+G++ + R V M+FQ N F ++ N+ G ++ GL Sbjct: 48 FLTPASGSLTLNGQDHTTTPPS----RRPVSMLFQENNLFSHLTVAQNIGLG--LNPGLK 101 Query: 118 NNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEP 177 N A +++ ++ ++ + ++ RL LSGGQ+QRV +AR L ++L+DEP Sbjct: 102 LNAAQREKLHAIA-RQMGI-EDLLARL---PGQLSGGQRQRVALARCLVREQPILLLDEP 156 Query: 178 CSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDK 235 SALDP + L+ ++ LT+++V+HS++ AAR++ R+ + G + + TD+ Sbjct: 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216 Query: 236 MFT 238 + + Sbjct: 217 LLS 219 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 84.9 bits (210), Expect = 2e-17 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 22/194 (11%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQR 95 L+GP+G GK+T LR + G I + + + +G V QR Sbjct: 10 GLLGPNGAGKTTLLRAI------------LGLIPPAKGTVKVAGASPGKGWRHIGYVPQR 57 Query: 96 PN---PFPKSIYDNVAYGP--RIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL 150 FP S+ V G I L V +L++ L E+ DR + Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL-TELADRPVGE--- 113 Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209 LSGGQ+QRV +ARALA P V+L+DEP + LD + EL EL I++ TH + Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173 Query: 210 QQAARVSQRAAMFH 223 QA R + + Sbjct: 174 AQAMATCDRVVLLN 187 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 85.0 bits (210), Expect = 2e-17 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 17/235 (7%) Query: 11 KVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 VS Y + AL +INL I + +IG +G GKST LN + G+++ Sbjct: 6 NVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-----KGKVL 60 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIV 127 + G + S + +R VG+VFQ P +++ +++A+GP L +I + V Sbjct: 61 VSGIDTGDFS-KLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPE--NLCLPPIEIRKRV 117 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 + +L + L + LSGGQ Q V +A L + PE ++ DE S LDP + Sbjct: 118 DRALAEIGL----EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 Query: 188 SVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 +V E I +L E TIV +TH++++ + R + G +V E + + + + S Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVS 227 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 82.5 bits (204), Expect = 9e-17 Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 37/237 (15%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 + AL ++N + + + GP+G GKST L + R + + G+I + + Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE-----GDIRFHDIPLTK 381 Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 +D R+R+ +V Q P F ++ +N+A LG A +I E + AS+ Sbjct: 382 LQLDS--WRSRLAVVSQTPFLFSDTVANNIA-------LGRPDATQQEI-EHVARLASVH 431 Query: 138 N-----------EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 + EV +R +LSGGQ+QR+ IARAL +N E++++D+ SA+D Sbjct: 432 DDILRLPQGYDTEVGER----GVMLSGGQKQRISIARALLLNAEILILDDALSAVD---G 484 Query: 187 ASVEELIHELR---ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 + +++H LR E T++I H + S+ M H GH+ + + D++ Sbjct: 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH-GHIAQRGNHDQLAQQS 540 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 82.0 bits (203), Expect = 1e-16 Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 25/200 (12%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 G+K L I+ ++ A+IGPSG GKST L R+ I +G + LDG ++ Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKST----LARLIVGIWPPT-SGSVRLDGADLK 383 Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 Q D +G + Q FP ++ +N+A G N AD ++I+E + K + Sbjct: 384 Q--WDRETFGKHIGYLPQDVELFPGTVAENIAR------FGEN-ADPEKIIEAA--KLAG 432 Query: 137 FNEVKDRL--FHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 +E+ RL +D + LSGGQ+QR+ +ARAL +P+++++DEP S LD + Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492 Query: 189 VEELIHELR-ESLTIVIVTH 207 + I L+ +T+V++TH Sbjct: 493 LANAIKALKARGITVVVITH 512 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 81.8 bits (202), Expect = 2e-16 Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 42/259 (16%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET------------- 58 ++ + K L +I+ I + V ++G SG GKS + L M++ Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65 Query: 59 IDNCVFTGEIILDGKN-------IYQSSVDVV--------RLRARVGMVFQRPNPF--PK 101 + C + G+ + VD R+R R+ ++ QR Sbjct: 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125 Query: 102 SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK--DRLFHDASLLSGGQQQRV 159 ++ DNV + L + + V ++ L V+ R+ H A LSGG++QRV Sbjct: 126 TVLDNV-----LEALEEIGYEGKEAVGRAVD---LIEMVQLSHRITHIARDLSGGEKQRV 177 Query: 160 CIARALAVNPEVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQQAARVSQ 217 +AR LA P + L DEP LDP V + E +++V+ +H + +S Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 Query: 218 RAAMFHMGHLVEEDDTDKM 236 +A G + EE D++ Sbjct: 238 KAIWLENGEIKEEGTPDEV 256 Score = 74.8 bits (184), Expect = 2e-14 Identities = 63/236 (26%), Positives = 119/236 (50%), Gaps = 21/236 (8%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDN--CVFTGEII 69 +SV G +A+ +++L++ + + ++G SG GK+T + + + E V G+ Sbjct: 290 ISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW 349 Query: 70 LDGKNIYQSSVDVVRLRAR--VGMVFQRPNPFP-KSIYDNVAYGPRIH---GLGNNKADI 123 +D + + D R RA+ +G++ Q + +P +++ DN+ + L KA I Sbjct: 350 VD---MTKPGPDG-RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI 405 Query: 124 D-QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 ++V +KA E+ D+ + LS G++ RV +A+ L P ++++DEP +D Sbjct: 406 TLKMVGFDEEKAE---EILDKYPDE---LSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459 Query: 183 PIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 PI V I + RE + T +IV+H M V RAA+ G +V+ D +++ Sbjct: 460 PITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 81.4 bits (201), Expect = 2e-16 Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 17/200 (8%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV-VRLRAR-VGMVF 93 ALIG SG GKST L L +++ +GE+ L G+ ++Q + +LRA+ VG VF Sbjct: 40 ALIGESGSGKSTLLAILAGLDDG-----SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94 Query: 94 QRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLS 152 Q P + +NV + G + ++ + + L++ L RL H + LS Sbjct: 95 QSFMLIPTLNALENVELPALLRGESSRQSR-NGAKAL-LEQLGL----GKRLDHLPAQLS 148 Query: 153 GGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL--RESLTIVIVTHSMQ 210 GG+QQRV +ARA P+V+ DEP LD + +L+ L T+++VTH +Q Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 Query: 211 QAARVSQRAAMFHMGHLVEE 230 AAR R G L EE Sbjct: 209 LAARC-DRRLRLVNGQLQEE 227 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 81.0 bits (200), Expect = 3e-16 Identities = 55/232 (23%), Positives = 117/232 (50%), Gaps = 17/232 (7%) Query: 7 MISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTG 66 + + ++ YG + AL +++ + + + +GP+G GKST ++ + T +G Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKII-----TGYLPPDSG 57 Query: 67 EIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIY--DNVAYGPRIHGLGNNKADID 124 + + G+++ Q+ +V + +G + + NP +Y + + + I+G+ + Sbjct: 58 SVQVCGEDVLQNPKEV---QRNIGYLPEH-NPLYLDMYVREYLQFIAGIYGMKGQL--LK 111 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 Q VE ++ L E ++ LS G +QRV +A+AL +P+V+++DEP + LDP Sbjct: 112 QRVEEMIELVGLRPEQHKKI----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN 167 Query: 185 ATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 + +I + + TI++ TH MQ+ + R + + G +V + D++ Sbjct: 168 QLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 80.5 bits (199), Expect = 3e-16 Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 30/212 (14%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 L +++L + AL GPSG GKST L+ L N D+ G I + V Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA-NYLPDS----GRI---LVRHEGAWV 74 Query: 81 DVVRLRAR---------VGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130 D+ + R +G V Q P S + VA G+ A Sbjct: 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAA--------R 126 Query: 131 LKKASLFN--EVKDRLFHDA-SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 + L + +RL+H + SGG+QQRV IAR + ++L+DEP ++LD Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 Query: 188 SVEELIHEL-RESLTIVIVTHSMQQAARVSQR 218 V ELI E ++ + H + V+ R Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEVRELVADR 218 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 80.4 bits (198), Expect = 5e-16 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 26/226 (11%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 VS YG+K + D++ I + L+GP+G GKST R L M G+I + Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR-----GKITVL 64 Query: 72 GKNIYQSSVDVVRL-RARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEM 129 G+ + RL R +G+V Q N P+ ++ +N+ R G+ + +I+ ++ Sbjct: 65 GEPVPSR----ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM--STREIEAVIPS 118 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L+ A L ++ R+ +LLSGG ++R+ +ARAL +P+++++DEP + LDP A Sbjct: 119 LLEFARLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA---- 170 Query: 190 EELIHELRESL-----TIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 LI E SL TI++ TH M++A R+ R + G + E Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 80.3 bits (198), Expect = 5e-16 Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 21/249 (8%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEI 68 + +S YG + D++ + V ++G SG GKST L CL R+ G Sbjct: 7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------APDHGTA 60 Query: 69 ILDGKN-----IYQSSVDVVRLRARV--GMVFQRP-NPFPKSIYDNVAYGPRIHGLG-NN 119 ++ +YQ S R R G V Q P + + G R+ +G + Sbjct: 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH 120 Query: 120 KADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCS 179 +I L++ + R+ SGG QQR+ IAR L P ++ MDEP Sbjct: 121 YGNIRAAAHDWLEEVEI---DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177 Query: 180 ALDPIATASVEELIHEL-RE-SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237 LD A + +L+ L R+ L ++IVTH + A ++QR + G +VE TD++ Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 Query: 238 TAPSDQRTQ 246 P TQ Sbjct: 238 DDPQHPYTQ 246 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 79.7 bits (196), Expect = 7e-16 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 66/245 (26%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL-DGKNIYQSSVDV 82 D+N + + A +G SGCGKST L+ + R+ + + G+II+ D N+ +++ Sbjct: 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE-----GDIIINDSHNL--KDINL 455 Query: 83 VRLRARVGMVFQRPNPFPKSIYDNVAY------------------------------GPR 112 R+++G+V Q P F SI +N+ Y R Sbjct: 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 Query: 113 IHGLGN-----NKADIDQIVEM-----SLKKASLFNEVKDRLFHD--------------- 147 G+ N D ++++EM ++K + + + K L HD Sbjct: 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 Query: 148 -ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR--ESLTIVI 204 AS LSGGQ+QR+ IARA+ NP+++++DE S+LD + V++ I+ L+ E+ +I Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 Query: 205 VTHSM 209 + H + Sbjct: 636 IAHRL 640 Score = 73.1 bits (179), Expect = 6e-14 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 22/203 (10%) Query: 60 DNCVF--TGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLG 117 D+ VF +G+I+LDG +I ++ LR +V Q P F SIY+N+ +G Sbjct: 1269 DSTVFKNSGKILLDGVDI--CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 Query: 118 NNK-----ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVI 172 + K A ID+ +E SL N+ + LSGGQ+QR+ IARAL P+++ Sbjct: 1327 DVKRACKFAAIDEFIE------SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380 Query: 173 LMDEPCSALDPIATASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFH----MGH 226 L+DE S+LD + +E+ I ++++ TI+ + H + R S + +F+ G Sbjct: 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGS 1439 Query: 227 LVEEDDTDKMFTAPSDQRTQDYI 249 V+ T + + D + Y+ Sbjct: 1440 FVQAHGTHEELLSVQDGVYKKYV 1462 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 79.3 bits (195), Expect = 8e-16 Identities = 55/204 (26%), Positives = 110/204 (53%), Gaps = 15/204 (7%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 +N+ +N +TA +G +G GK+T L L + +G +++ GK+I ++++D VR Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT-----SGTVLVGGKDI-ETNLDAVR 1002 Query: 85 LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143 +GM Q F ++ +++ + ++ G +A ++ +E L+ L ++ + Sbjct: 1003 --QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE--MEAMLEDTGLHHKRNE- 1057 Query: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIV 203 +A LSGG Q+++ +A A + +V+++DEP S +DP + S+ +L+ + R TI+ Sbjct: 1058 ---EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114 Query: 204 IVTHSMQQAARVSQRAAMFHMGHL 227 + TH M +A + R A+ G L Sbjct: 1115 MSTHHMDEADLLGDRIAIISQGRL 1138 Score = 55.0 bits (132), Expect = 2e-08 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 48/208 (23%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQR 95 L+G +G GK+T + L T D V +G+ + GK+I + DV Sbjct: 1969 GLLGVNGAGKTTTFKML-----TGDTTVTSGDATVAGKSILTNISDV------------- 2010 Query: 96 PNPFPKSIYDNVAYGPRIHGL-----------------GNNKADIDQIVEMSLKKASLFN 138 + N+ Y P+ + G +I+++ S++ L + Sbjct: 2011 --------HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-S 2061 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE-LR 197 DRL A SGG ++++ A AL P ++L+DEP + +DP A + I +R Sbjct: 2062 LYADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 Query: 198 ESLTIVIVTHSMQQAARVSQRAAMFHMG 225 E +V+ +HSM++ + R A+ G Sbjct: 2119 EGRAVVLTSHSMEECEALCTRLAIMVKG 2146 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 79.5 bits (196), Expect = 8e-16 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 21/210 (10%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +SV +G+ L ++L + + S+ L+GP+G GK+T LR +N T+ G +++ Sbjct: 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRA---INGTLTPT--AGTVLVA 63 Query: 72 GKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYG--PRIHGLGNNKADIDQIVE 128 G ++ ++ RV V Q + F + V G P VE Sbjct: 64 GDDV--EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121 Query: 129 MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALD---PIA 185 ++++ + + DR + LSGG++QRV +ARALA V+L+DEP ++LD + Sbjct: 122 RAMERTGV-AQFADR---PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177 Query: 186 T-ASVEELIHELRESLTIVIVTHSMQQAAR 214 T V L+ + + T V H + AAR Sbjct: 178 TLELVRRLVDDGK---TAVAAIHDLDLAAR 204 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 78.6 bits (194), Expect = 1e-15 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 18/203 (8%) Query: 10 NKVSVCY-GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 + VS Y + L +INL +P AL+G +G GKST L L + GEI Sbjct: 344 DNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKST-LASLLMGYYPLTE----GEI 398 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 LDG+ + S V LR V MV Q P + NV G I ++ + Q +E Sbjct: 399 RLDGRPLSSLSHSV--LRQGVAMVQQDPVVLADTFLANVTLGRDI-----SEEQVWQALE 451 Query: 129 MSLKKASLFNEVKD----RLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 ++ A L + D L + LS GQ+Q + +AR L P+++++DE + +D Sbjct: 452 T-VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 Query: 185 ATASVEELIHELRESLTIVIVTH 207 ++++ + +RE T+V++ H Sbjct: 511 TEQAIQQALAAVREHTTLVVIAH 533 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 77.4 bits (191), Expect = 3e-15 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 21/231 (9%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT-GEIILDGKNIYQSSVDV 82 ++L + + V AL+G SG GKS L C + T G ++LDGK + + Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPCA--- 75 Query: 83 VRLRAR-VGMVFQRP----NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 LR R + + Q P NP + R L K D + +L+ L Sbjct: 76 --LRGRKIATIMQNPRSAFNPL-----HTMHTHARETCLALGKPADDATLTAALEAVGL- 127 Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196 L +SGG QR+ IA AL I+ DEP + LD +A A + +L+ + Sbjct: 128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187 Query: 197 -RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQ 246 + +L +++VTH M AR++ A+ G +VE+ D + +F AP T+ Sbjct: 188 QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 77.0 bits (189), Expect = 5e-15 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 18/227 (7%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 Y ++ L +NL + VT L+G +GCGKST L+ + G ++ GK + Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK-----GAVLWQGKPL 65 Query: 76 YQSSVDVVRLRARVGMVFQRPNP--FPKSIYDNVAYGPRIHGLGNNKADIDQIVE--MSL 131 S ++ LR +V VFQ P F I ++A+ R LG +A+I + V+ ++L Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR--NLGVPEAEITRRVDEALTL 123 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 A F LS GQ++RV IA AL + +L+DEP + LDP + Sbjct: 124 VDAQHFRH------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177 Query: 192 LIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMF 237 +I + + ++I +H + +S + G ++ ++F Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 75.0 bits (185), Expect = 2e-14 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT-GEI 68 + V +K L +NL + + + A++GP+G GKST + + + T G I Sbjct: 4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTI--AGH--PSYEVTSGTI 59 Query: 69 ILDGKNIYQSSVDVVRLRARVGMV--FQRPNPFP---KSIYDNVAYGPRIHGLGNNKADI 123 + G+++ + D RAR G+ FQ P P + A R G D+ Sbjct: 60 LFKGQDLLELEPDE---RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDL 116 Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASL---LSGGQQQRVCIARALAVNPEVILMDEPCSA 180 +++ K +L D F + S+ SGG+++R I + + P++ ++DE S Sbjct: 117 LDFLKLLKAKLALLG--MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSG 174 Query: 181 LDPIATASVEELIHELR-ESLTIVIVTH 207 LD A V E I+ LR + +I+TH Sbjct: 175 LDIDALKIVAEGINRLREPDRSFLIITH 202 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 73.8 bits (181), Expect = 4e-14 Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 22/242 (9%) Query: 10 NKVSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 N V+V + AL D + +P S+ AL+G +G GKST + L + +G+I Sbjct: 10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKI 64 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPN---PFPKSIYDNVAYGPRIHG--LGNNKADI 123 +I + V V Q FP + D V G H L K Sbjct: 65 -----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119 Query: 124 DQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183 QIV +L + + E + R + LSGGQ++RV +ARA+A +VIL+DEP + +D Sbjct: 120 RQIVTAALARVDMV-EFRHRQIGE---LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175 Query: 184 IATASVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD 242 A + L+ ELR E T+++ TH++ M G ++ T+ FTA + Sbjct: 176 KTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAENL 234 Query: 243 QR 244 + Sbjct: 235 EL 236 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 73.3 bits (180), Expect = 5e-14 Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 16/235 (6%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSV 80 L ++L P VT LIG +G GKST L+ L R GEI+LD + + SS Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-----EGEILLDAQPLESWSSK 81 Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLKKASLFN 138 R A + Q P ++ + VA G P LG A + VE ++ L Sbjct: 82 AFARKVAYLPQ--QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-K 138 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 + RL LSGG++QR IA +A + +L+DEP SALD V L+H L + Sbjct: 139 PLAHRLVDS---LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 Query: 199 --SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMG 251 LT++ V H + AAR G ++ + ++ + ++ MG Sbjct: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPMG 250 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 73.0 bits (180), Expect = 8e-14 Identities = 70/264 (26%), Positives = 108/264 (40%), Gaps = 51/264 (19%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLN-RMNETIDNCVFTGEI 68 ++ YG ++ D++ + V ++G SG GK+T L L+ R+ GE+ Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD------AGEV 63 Query: 69 ILDGK-----NIYQSSVDVVRLRARV--GMVFQRPNPFPK---SIYDNVAYGPRIHGLGN 118 + ++Y S R R G V Q P + S N+ G R+ +G Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI--GERLMAVGA 121 Query: 119 NK--------ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170 D + VE+ R+ + SGG QQR+ IAR L +P Sbjct: 122 RHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFSGGMQQRLQIARNLVTHPR 171 Query: 171 VILMDEPCSALDPIATASVE--------ELIHELRESLTIVIVTHSMQQAARVSQRAAMF 222 ++ MDEP LD SV+ L+ EL L +VIVTH + A ++ R + Sbjct: 172 LVFMDEPTGGLD----VSVQARLLDLLRGLVRELG--LAVVIVTHDLAVARLLAHRLLVM 225 Query: 223 HMGHLVEEDDTDKMFTAPSDQRTQ 246 G +VE TD++ P TQ Sbjct: 226 KQGRVVESGLTDQVLDDPQHPYTQ 249 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 72.6 bits (178), Expect = 1e-13 Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 36/256 (14%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETI--DNCVFTGEIILDGKNI 75 + L D++L+I VTAL+G +G GKST L+ L + TG++ L+G+ + Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 Query: 76 YQSSVDVVRLRARVGMVFQRPNP-FPKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLK 132 +D RL ++ Q P F S + V G P G +I +L Sbjct: 74 AA--IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131 Query: 133 KASLFNEVKDRLFHDASLLSGGQQQRVCIARALA---------VNPEVILMDEPCSALDP 183 A V D + LSGG+ RV AR LA P +L+DEP +ALD Sbjct: 132 LAGATALVG----RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD- 186 Query: 184 IATASVEELIHELRE-----SLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238 A L+ +R +L ++ + H AAR + R AM G +V Sbjct: 187 --LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG------- 237 Query: 239 APSDQRTQDYIMGRFG 254 AP+D T +I +G Sbjct: 238 APADVLTPAHIARCYG 253 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 71.7 bits (176), Expect = 2e-13 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 16/224 (7%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRA-RVGMVFQ 94 A+IG +G GKST + L M E GE+++D + R+ R+ M+FQ Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTS-----GELLIDD---HPLHFGDYSYRSQRIRMIFQ 94 Query: 95 RPNPF--PKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLS 152 P+ P+ + P ++ + +L++ L D + +L+ Sbjct: 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP---DHASYYPHMLA 151 Query: 153 GGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTI--VIVTHSMQ 210 GQ+QR+ +ARAL + P+VI+ DE ++LD + + L+ EL+E I + VT + Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211 Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGRFG 254 +S + + H G +VE T + +P + T+ I G FG Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFG 255 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 71.9 bits (177), Expect = 2e-13 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 31/222 (13%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQS 78 +AL DI+ V AL+G +G GKST L+ L+ + G I++DG+ + + S Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSG-----NYQPDAGSILIDGQEMRFAS 72 Query: 79 SVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 + L A V +++Q + P+ ++ +N+ G H G + + L Sbjct: 73 TTAA--LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG------------IVNRRLLN 118 Query: 138 NEVKDRLFH-------DASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATAS 188 E +++L H D L LS GQ+Q V IA+ALA N VI DEP S+L Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178 Query: 189 VEELIHELRESLTIVI-VTHSMQQAARVSQRAAMFHMGHLVE 229 + +I ELR +++ V+H M++ + +F G V Sbjct: 179 LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 Score = 48.0 bits (115), Expect = 2e-06 Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS 208 LSGG QQ+ + R L+ + +VIL+DEP +D A + +I+EL V+ S Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 70.4 bits (172), Expect = 5e-13 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 34/241 (14%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81 L IN+ I ++G +G GKS+ L R+NE+ + GEII+DG NI + + Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE-----GEIIIDGLNI--AKIG 1354 Query: 82 VVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141 + LR ++ ++ Q P F S+ N L D+ V +L+ A L V Sbjct: 1355 LHDLRFKITIIPQDPVLFSGSLRMN---------LDPFSQYSDEEVWWALELAHLKTFVS 1405 Query: 142 ---DRLFHDASL----LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 D+L H+ + LS GQ+Q VC+ARAL +++++DE +A+D ++ I Sbjct: 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 Query: 195 ELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSD---QRTQDYIMG 251 E T++ + H + + R + G + E F APS+ QR Y M Sbjct: 1466 TQFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAE-------FGAPSNLLQQRGIFYSMA 1517 Query: 252 R 252 + Sbjct: 1518 K 1518 Score = 61.5 bits (149), Expect = 2e-10 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 39/203 (19%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 L I IP+ ++ A++G GCGKS+ L L + ++ G + + G Y Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-----GHVHMKGSVAY 703 Query: 77 ---QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 Q+ + LR + + + + + A P + L + D +I E + Sbjct: 704 VPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS--GDRTEIGEKGVN- 760 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 LSGGQ+QRV +ARA+ N ++ L D+P SA+D A V + I Sbjct: 761 -----------------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD----AHVGKHI 799 Query: 194 HE-------LRESLTIVIVTHSM 209 E + ++ T ++VTH + Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGI 822 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 70.1 bits (172), Expect = 5e-13 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 34/204 (16%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 VSV +G++R L D++L++ + L+GP+G GKST +R V G + Sbjct: 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVR------------VVLGLVA 55 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 D I ++ + R+G V Q+ ++ V R+ G K DI Sbjct: 56 PDEGVIKRNG------KLRIGYVPQKLYLDT-TLPLTVNRFLRLRP-GTKKEDILP---- 103 Query: 130 SLKKASLFNEVKDRLFHDASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 +LK+ V+ DA + LSGG+ QRV +ARAL P+++++DEP +D Sbjct: 104 ALKR------VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 Query: 188 SVEELIHELRESL--TIVIVTHSM 209 ++ +LI +LR L +++V+H + Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 70.1 bits (172), Expect = 5e-13 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 29/203 (14%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQS 78 +AL ++NLK+ +S+ AL+G +G GKST L+CL + + +G I+ GK I ++S Sbjct: 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-----SGSILFQGKEIDFKS 66 Query: 79 SVDVVRLRARVGMVFQRPNPF-PKSIYDNVAYG--PRIHGLGNNKADIDQIVEMSLKKAS 135 S + L + MV Q N +S+ DN+ G P +DQ +M + Sbjct: 67 SKEA--LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF------VDQ-DKMYRDTKA 117 Query: 136 LFNEV------KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 +F+E+ + ++ + LS Q Q + IA+A + N ++++MDEP S+L + Sbjct: 118 IFDELDIDIDPRAKV----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173 Query: 190 EELIHELRES-LTIVIVTHSMQQ 211 +I +L+E IV ++H M++ Sbjct: 174 FTIIRKLKERGCGIVYISHKMEE 196 Score = 49.7 bits (119), Expect = 8e-07 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209 LSGG QQ+V I R L PE++++DEP +D A + +LI EL ++ I+I++ M Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451 Query: 210 QQAARVSQR 218 + ++ R Sbjct: 452 PELLGITDR 460 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 69.0 bits (169), Expect = 1e-12 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 19/236 (8%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 G+ A+ D+N + ++G SG GKS L M N G +G+ I Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL--MGLLAANGRIGGSATFNGREIL 84 Query: 77 Q-SSVDVVRLRA-RVGMVFQRP----NPFPKSIYDNVAYGPRIH-GLGNNKADIDQIVEM 129 ++ +LRA ++ M+FQ P NP+ + + + + +H G+ +A E Sbjct: 85 NLPEKELNKLRAEQISMIFQDPMTSLNPYMR-VGEQLMEVLMLHKGMSKAEA-----FEE 138 Query: 130 SLK--KASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 S++ A E + R+ SGG +QRV IA AL P++++ DEP +ALD A Sbjct: 139 SVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQA 198 Query: 188 SVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPS 241 + L++EL+ I+++TH + A + + + + G +E + +F PS Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS 254 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 68.4 bits (168), Expect = 2e-12 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 27/194 (13%) Query: 20 RALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQS 78 R LF ++ + L GP+G GK+T LR + + G I LDG +I Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDDP 69 Query: 79 SV--DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE-MSLKKAS 135 V L R M P ++ +N+ + LG + DI +E + L Sbjct: 70 DVAEACHYLGHRNAM-----KPA-LTVAENLEFWAAF--LGGEELDIAAALEAVGL---- 117 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 + F LS GQ++RV +AR L N + ++DEP +ALD A A ELI Sbjct: 118 --APLAHLPFGY---LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 Query: 196 -LRESLTIVIVTHS 208 L + ++ TH Sbjct: 173 HLAQGGIVIAATHI 186 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 67.3 bits (165), Expect = 4e-12 Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 32/213 (15%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 +NL++ + + +LIGP+G GK+T CL + G I+L G++I + Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-----GGTILLRGQHIEGLPGHQI- 77 Query: 85 LRARVGMV--FQRPNPFPK-SIYDN--VAYGPR-----IHGLGNNKA-------DIDQIV 127 AR+G+V FQ F + ++ +N VA + GL A +D+ Sbjct: 78 --ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAA 135 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 L++ L E +R A L+ GQQ+R+ IAR + PE++++DEP + L+P T Sbjct: 136 TW-LERVGLL-EHANR---QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190 Query: 188 SVEELIHELRES--LTIVIVTHSMQQAARVSQR 218 ++ELI ELR +T++++ H M+ +S R Sbjct: 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 66.0 bits (161), Expect = 1e-11 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 44/247 (17%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS-VDV 82 DI+ + + + G G G++ + CL +++ GEI L+GK+I S +D Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA-----GGEIRLNGKDISPRSPLDA 335 Query: 83 VRLRARVGMVF----QRPNPF-PK-SIYDNVAYGPRIH--------GLGNNKADI----D 124 V+ GM + +R N F P SI N+A + GL + + + Sbjct: 336 VK----KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391 Query: 125 QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPI 184 Q ++LK S+ + + LSGG QQ+V I++ L PEVI+ DEP +D Sbjct: 392 QRELLALKCHSVNQNITE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443 Query: 185 ATASVEELIHELRES-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQ 243 A A + +++ +L + I++V+ + + V R A+F G L + T D Sbjct: 444 AKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI------LTN-RDD 496 Query: 244 RTQDYIM 250 +++ IM Sbjct: 497 MSEEEIM 503 Score = 60.2 bits (146), Expect = 5e-10 Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 17/210 (8%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 +G AL +NL + + AL+G +G GKST ++ L+ ++E G I ++ N Sbjct: 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-----KGTITINNIN- 68 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYG--PRIHGLGNNKAD---IDQIVEM 129 Y + + +G+++Q + + ++ +N+ G G N D + M Sbjct: 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM 128 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 L + L K L + LS +Q + IA+ L ++ +VI+MDEP S+L + Sbjct: 129 MLLRVGL----KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184 Query: 190 EELIHELR-ESLTIVIVTHSMQQAARVSQR 218 ++++LR E IV ++H + + R+ R Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDR 214 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 65.3 bits (160), Expect = 2e-11 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 26/214 (12%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ-SSVDVVRLRARVGMVFQR 95 L+GP+G GKST L + + +G I G+ + S+ ++ R RA + Q+ Sbjct: 27 LVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRAYLSQ--QQ 78 Query: 96 PNPFPKSIYDNVA-YGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGG 154 PF ++ + + P + ++++ E L + D+L + LSGG Sbjct: 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEA-LG-------LDDKLGRSVNQLSGG 130 Query: 155 QQQRVCIARAL-----AVNPE--VILMDEPCSALDPIATASVEELIHEL-RESLTIVIVT 206 + QRV +A + +NP ++L+DEP ++LD A+++ L+ EL ++ + +V+ + Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190 Query: 207 HSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 H + R + R + G L+ D++ T Sbjct: 191 HDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 63.6 bits (155), Expect = 4e-11 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 31/219 (14%) Query: 17 GEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 E+ L +INL +P S+ A++G +G GK++ + + GE+ Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM------------LGELPP------ 669 Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV---EMSLKK 133 +S VV +R V V Q F ++ DN+ +G +A ID ++ L Sbjct: 670 RSDASVV-IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERA-IDVTALQHDLDLLP 727 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE-- 191 E+ +R + +SGGQ+QRV +ARA+ N +V + D+P SALD V + Sbjct: 728 GGDLTEIGERGVN----ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783 Query: 192 LIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 + ELR T V+VT+ + ++V R + H G + EE Sbjct: 784 IKDELRGK-TRVLVTNQLHFLSQVD-RIILVHEGMIKEE 820 Score = 51.7 bits (124), Expect = 2e-07 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 29/193 (15%) Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDV 82 F+I+ P V ++G +G GKS+ L L R+ E + G I++DG +I S + Sbjct: 1260 FEIS---PSEKV-GIVGRTGAGKSSMLNALFRIVE-----LERGRILIDGCDI--SKFGL 1308 Query: 83 VRLRARVGMVFQRPNPFPKSIYDNV-AYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141 + LR +G++ Q P F ++ N+ + +N AD+ + SL++A L + ++ Sbjct: 1309 MDLRKVLGIIPQAPVLFSGTVRFNLDPFNE------HNDADLWE----SLERAHLKDVIR 1358 Query: 142 DRLFH-DASLLSGG------QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 DA + G Q+Q + +ARAL +++++DE +A+D A +++ I Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 Query: 195 ELRESLTIVIVTH 207 E +S T++I+ H Sbjct: 1419 EEFKSCTMLIIAH 1431 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 63.4 bits (155), Expect = 5e-11 Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 59/214 (27%) Query: 27 LKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD-GKNIYQSSVDVVRL 85 L I N L+G +G GKST ++ LN GE++LD G+ IY+ + V RL Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILN------------GEVLLDDGRIIYEQDLIVARL 71 Query: 86 RARVGMVFQRPNPFPK----SIYDNVAYGPRIHGLGNNKADIDQI-----VEMSLKKASL 136 + Q P P+ ++YD VA G I I + S K + Sbjct: 72 Q-------QDP---PRNVEGTVYDFVAEG--IEEQAEYLKRYHDISHLVETDPSEKNLNE 119 Query: 137 FNEVKDRLFH---------------------DASL--LSGGQQQRVCIARALAVNPEVIL 173 +++++L H DA+L LSGG ++ + RAL NP+V+L Sbjct: 120 LAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLL 179 Query: 174 MDEPCSALDPIATASVEELIHELRESLTIVIVTH 207 +DEP + LD +E + + S I+ ++H Sbjct: 180 LDEPTNHLDIETIEWLEGFLKTFQGS--IIFISH 211 Score = 47.3 bits (113), Expect = 4e-06 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 57/191 (29%) Query: 36 ALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY-QSSVDVV---RLRARVGM 91 ALIGP+GCGK+T L+ + G++ D I+ + ++V + RA + Sbjct: 349 ALIGPNGCGKTTLLKLM------------LGQLQADSGRIHCGTKLEVAYFDQHRAEL-- 394 Query: 92 VFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDA--- 148 +P K++ DN+A G Q V ++ + + ++D LFH Sbjct: 395 -----DP-EKTVMDNLAEG-------------KQEVMVNGRPRHVLGYLQDFLFHPKRAM 435 Query: 149 ---SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESL----- 200 LSGG++ R+ +AR ++++DEP + LD VE L EL E L Sbjct: 436 TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD------VETL--ELLEELLDSYQ 487 Query: 201 -TIVIVTHSMQ 210 T+++V+H Q Sbjct: 488 GTVLLVSHDRQ 498 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 63.3 bits (155), Expect = 6e-11 Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 49/214 (22%) Query: 16 YGEKR-ALFDINLKIPQN-SVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD-G 72 YG L+ L IP+ VT ++GP+G GK+T ++ L +GE+I + G Sbjct: 83 YGVNGFKLY--GLPIPKEGKVTGILGPNGIGKTTAVKIL------------SGELIPNLG 128 Query: 73 KNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDN---VAYGPRIHGLGNNKADIDQI--- 126 + S D V L+ G Q N F K +Y+ V + P+ +D I Sbjct: 129 DYEEEPSWDEV-LKRFRGTELQ--NYF-KKLYNGEIKVVHKPQY---------VDLIPKV 175 Query: 127 ----VEMSLKKA---SLFNEVKDRLF------HDASLLSGGQQQRVCIARALAVNPEVIL 173 V LKK +EV +RL D S LSGG+ QRV IA AL + + Sbjct: 176 FKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF 235 Query: 174 MDEPCSALDPIATASVEELIHELRESLTIVIVTH 207 DEP S LD +V LI EL E +++V H Sbjct: 236 FDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 Score = 44.8 bits (107), Expect = 2e-05 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 61/193 (31%) Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88 I + V ++GP+G GK+TF + L G + D + ++ Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLL------------AGVLKPDEGEVDPE----LK---- 401 Query: 89 VGMVFQRPNPFPKSIYDNVAYGP-RIHGLGNNKADIDQIVEMSLKKAS-------LFNEV 140 ++Y P I K D D VE L+ + +E+ Sbjct: 402 ------------------ISYKPQYI------KPDYDGTVEDLLRSITDDLGSSYYKSEI 437 Query: 141 KDRL----FHDASL--LSGGQQQRVCIARALAVNPEVILMDEPCSALD---PIATASVEE 191 L D ++ LSGG+ QRV IA L+ + ++ L+DEP + LD +A A Sbjct: 438 IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 Query: 192 LIHELRESLTIVI 204 I E RE+ +V+ Sbjct: 498 RIAEEREATALVV 510 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 63.1 bits (153), Expect = 8e-11 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 28/197 (14%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 K L DINL+IP S+ A++G +G GK++ + + GE+ + Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----SHAET 672 Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIV---EMSLKKA 134 SSV + R V V Q F ++ +N+ +G +A ID ++ L Sbjct: 673 SSVVI---RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRA-IDVTALQHDLDLLPG 728 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELI 193 E+ +R + +SGGQ+QRV +ARA+ N ++ + D+P SALD +A + + Sbjct: 729 RDLTEIGERGVN----ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784 Query: 194 HELRESLTIVIVTHSMQ 210 + + T V+VT+ + Sbjct: 785 KDELKGKTRVLVTNQLH 801 Score = 51.1 bits (122), Expect = 2e-07 Identities = 42/180 (23%), Positives = 90/180 (50%), Gaps = 23/180 (12%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96 ++G +G GKS+ L L R+ E + G I++D ++ + + LR + ++ Q P Sbjct: 1267 VVGRTGAGKSSMLNALFRIVE-----LEKGRIMIDDCDV--AKFGLTDLRRVLSIIPQSP 1319 Query: 97 NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFH-DASLLSGG- 154 F ++ N+ +N AD+ + +L++A + + + F DA + GG Sbjct: 1320 VLFSGTVRFNIDPFSE-----HNDADLWE----ALERAHIKDVIDRNPFGLDAEVSEGGE 1370 Query: 155 -----QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSM 209 Q+Q + +ARAL +++++DE +++D + ++ I E +S T++++ H + Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 62.6 bits (152), Expect = 9e-11 Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 38/220 (17%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY- 76 E+ L + + A++GPSG GKST L N + I FTG I+ + + Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLL---NALAGRIQGNNFTGTILANNRKPTK 136 Query: 77 ----------QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQI 126 Q + L R +VF PKS+ I Sbjct: 137 QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE----------KILVAESVI 186 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 E+ L K N + F +SGG+++RV IA + +NP ++++DEP S LD AT Sbjct: 187 SELGLTKCE--NTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLD--AT 240 Query: 187 AS---VEELIHELRESLTIVIVTHSMQQAARVSQRAAMFH 223 A+ V L ++ TIV H Q ++RV Q MF Sbjct: 241 AAYRLVLTLGSLAQKGKTIVTSMH--QPSSRVYQ---MFD 275 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 62.2 bits (152), Expect = 1e-10 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 67/242 (27%) Query: 4 IYKMISNKVSVCYGEKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62 IY M N+VS K+ + DI+L + ++G +G GKST LR + +D Sbjct: 4 IYTM--NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM----AGVDK- 56 Query: 63 VFTGEIIL-DGKNIYQSSVDVVRLRARVGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNK 120 F GE G +VG + Q P P K++ +NV G+ K Sbjct: 57 EFNGEARPAPG--------------IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIK 97 Query: 121 ADIDQIVEMSLKKA-------SLFNE---VKDRLFH------------------------ 146 +D+ E+S K A +L E +++ + Sbjct: 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 Query: 147 DASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE-SLTIVIV 205 D + LSGG+++RV + R L P+++L+DEP + LD SV L L+E T+V V Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLEQHLQEYPGTVVAV 214 Query: 206 TH 207 TH Sbjct: 215 TH 216 Score = 57.6 bits (140), Expect = 3e-09 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 49/210 (23%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 +S +G+K + D++ K+P + +IGP+G GKST R + E D +G I Sbjct: 326 ENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-EQPD----SGTIK 380 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 + G+ + + VD ++R + PN K++++ ++ G I LG E+ Sbjct: 381 I-GETVKLAYVD----QSRDAL---DPN---KTVWEEISGGLDIIQLGK--------REV 421 Query: 130 -SLKKASLFNEVKDRLFHDA------SLLSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 S FN F + LSGG++ RV +A+ L V+L+DEP + LD Sbjct: 422 PSRAYVGRFN------FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 Query: 183 PIATASVEELIHELRESL-----TIVIVTH 207 VE L L E+L V+++H Sbjct: 476 ------VETL-RALEEALLEFAGCAVVISH 498 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 62.1 bits (151), Expect = 1e-10 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 13/226 (5%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 +G +AL I+L++ L G +G GKST ++ L+ + + GEI G + Sbjct: 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT---WDGEIYWSGSPL 67 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 S++ RA + ++ Q P+ S+ +N+ G I G A M L+ Sbjct: 68 KASNIRDTE-RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAY----NAMYLRAK 122 Query: 135 SLFNEVKDRLFHDA---SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 +L E++ + GGQQQ V IA+AL ++++DEP S+L T + + Sbjct: 123 NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182 Query: 192 LIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKM 236 +I +L + V ++H + + V + G V D M Sbjct: 183 IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 Score = 54.4 bits (131), Expect = 2e-08 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSM 209 LSGG QQ+ +A+ L NP V+++DEP +D A + +LI++L +E + I++V+ + Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 Query: 210 QQAARVSQRAAMFHMGHL 227 + +S R + G L Sbjct: 464 AEVLGLSDRVLVIGEGKL 481 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 60.8 bits (148), Expect = 3e-10 Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 9/102 (8%) Query: 150 LLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR-ESLTIVIVTHS 208 LLSGG QQ+V IAR L P+V+++DEP +D A + +LI++ + E L+I++V+ Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIM 250 M + +S R + H G + E FT +Q TQ+ +M Sbjct: 455 MPEVLGMSDRILVMHEGRISGE------FTR--EQATQEKLM 488 Score = 57.7 bits (140), Expect = 3e-09 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 34/206 (16%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY--- 76 +AL L + V AL+G +G GKST ++ L + T D G I+ GK + Sbjct: 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-YTRD----AGSILYLGKEVTFNG 72 Query: 77 -QSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRI-HGLG-------NNKADIDQI 126 +SS + A +G++ Q N P+ +I +N+ G + G +AD + Sbjct: 73 PKSSQE-----AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD-KLL 126 Query: 127 VEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 ++L+ +S D+L + LS G+QQ V IA+ L+ +VI+MDEP AL T Sbjct: 127 ARLNLRFSS------DKLVGE---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 Query: 187 ASVEELIHELRES-LTIVIVTHSMQQ 211 S+ +I EL+ IV ++H +++ Sbjct: 178 ESLFRVIRELKSQGRGIVYISHRLKE 203 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 58.7 bits (142), Expect = 1e-09 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE--SLTIVIVTHS 208 L+ G+ Q+V IA ALA P +++ DEP +A++P A + L+ L + + TI++++H Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 Query: 209 MQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI--MGRFG 254 +Q ++ + + + + G VE + ++ T P TQ I + FG Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFG 266 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 56.2 bits (136), Expect = 7e-09 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 29/195 (14%) Query: 20 RALFDINLKIPQNSVTALI--GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 R LF L N+ AL GP+G GK+T LR L + +GE+ +G + + Sbjct: 13 RMLF-EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-----SGEVRWNGTALAE 66 Query: 78 SSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASL 136 + R +G P P+ S +N+ + IHG + +E +L L Sbjct: 67 QRDEPHRNILYLG---HLPGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGL 117 Query: 137 FNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 +D LS GQQ+R+ +AR + ++DEP +ALD A V L L Sbjct: 118 -TGFEDLPAAQ---LSAGQQRRLALARLWLSRAPLWILDEPTTALDK---AGVALLAGLL 170 Query: 197 RESL----TIVIVTH 207 R L +++ TH Sbjct: 171 RAHLARGGIVLLTTH 185 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 56.2 bits (136), Expect = 8e-09 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 47/226 (20%) Query: 3 QIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNC 62 Q+ + K L +++ + A++G SG GK+T + L + Sbjct: 22 QLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK--GV 79 Query: 63 VFTGEIILDGKNI------------YQSSVDVVRLRARVGMVFQR----PNPFPKSIYDN 106 +G ++L+G I Q + + L R ++FQ P K Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE--- 136 Query: 107 VAYGPRIHGLGNNKADIDQIVE-MSLKKAS-----LFNEVKDRLFHDASLLSGGQQQRVC 160 + +D++++ + L+K + + VK LSGG+++R+ Sbjct: 137 ------------KRERVDEVLQALGLRKCANTRIGVPGRVKG--------LSGGERKRLA 176 Query: 161 IARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVT 206 A L +P ++ DEP S LD SV +++ L + +I T Sbjct: 177 FASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICT 222 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 56.1 bits (136), Expect = 9e-09 Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 41/230 (17%) Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 M I K +G +AL +++LK+ + +L G +G GKST ++ L Sbjct: 8 MKNITK--------TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVL-------- 51 Query: 61 NC------VFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRI 113 + GEII +G+ + S++ RA + ++ Q + S+ +N+ G I Sbjct: 52 -SGVYPHGTYEGEIIFEGEELQASNIRDTE-RAGIAIIHQELALVKELSVLENIFLGNEI 109 Query: 114 --HGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASL----LSGGQQQRVCIARALAV 167 G+ + A M L+ L ++K L + + L GQQQ V IA+AL Sbjct: 110 TPGGIMDYDA-------MYLRAQKLLAQLK--LDINPATPVGNLGLGQQQLVEIAKALNK 160 Query: 168 NPEVILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQQAARVS 216 ++++DEP ++L TA + ++I +L+ + + ++H + + +S Sbjct: 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAIS 210 Score = 51.9 bits (125), Expect = 1e-07 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 32/182 (17%) Query: 64 FTGEIILDGKNI-YQSSVDVVRL--------RARVGMVFQRPNPFPKSI----YDNVAYG 110 + GEI +DGK + ++ + R R G+V K+I D G Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMG--VGKNITLAALDRFTGG 373 Query: 111 PRIHGLGNNKADIDQIVE----MSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALA 166 RI ++ A++ I+E + +K AS + LSGG QQ+ +A+ L Sbjct: 374 SRI----DDAAELKTILESIQRLKVKTASPELAIAR--------LSGGNQQKAVLAKCLL 421 Query: 167 VNPEVILMDEPCSALDPIATASVEELIHEL-RESLTIVIVTHSMQQAARVSQRAAMFHMG 225 +NP+++++DEP +D A + +LI++L ++ + I++++ + + +S R + H G Sbjct: 422 LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 Query: 226 HL 227 L Sbjct: 482 KL 483 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 55.5 bits (135), Expect = 1e-08 Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 82/253 (32%) Query: 1 MNQ-IYKMISNKVSVCYGEKRALF-DINL------KIPQNSVTALIGPSGCGKSTFLRCL 52 M Q IY M N+VS K+ + DI+L KI ++G +G GKST LR + Sbjct: 2 MAQYIYTM--NRVSKVVPPKKQILKDISLSFFPGAKI------GVLGLNGAGKSTLLRIM 53 Query: 53 NRMNETIDNCVFTGEIIL-DGKNIYQSSVDVVRLRARVGMVFQRP--NPFPKSIYDNVAY 109 +D F GE G +VG + Q P +P K++ +NV Sbjct: 54 ----AGVDK-EFEGEARPAPG--------------IKVGYLPQEPQLDP-EKTVRENV-- 91 Query: 110 GPRIHGLGNNKADIDQIVEMSLKKA-------SLFNE---VKDRLFH------------- 146 G+ KA +D+ E+ A +L E +++ + Sbjct: 92 ---EEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 Query: 147 -DA----------SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 DA + LSGG+++RV + R L P+++L+DEP + LD SV L Sbjct: 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAWLEQF 205 Query: 196 LRE-SLTIVIVTH 207 L + T+V VTH Sbjct: 206 LHDYPGTVVAVTH 218 Score = 49.0 bits (118), Expect = 1e-06 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 39/181 (21%) Query: 10 NKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 +S +G+ R L D ++ +P + +IGP+G GKST + + E D +G I Sbjct: 328 ENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-EQPD----SGTI 381 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVE 128 + G+ + + VD ++R + PN K++++ ++ G I +GN E Sbjct: 382 KI-GETVKLAYVD----QSRDAL---DPN---KTVWEEISGGLDIIKVGN--------RE 422 Query: 129 M-SLKKASLFNEVKDRLFH--D----ASLLSGGQQQRVCIARALAVNPEVILMDEPCSAL 181 + S FN F D +LSGG++ R+ +A+ L V+L+DEP + L Sbjct: 423 IPSRAYVGRFN------FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476 Query: 182 D 182 D Sbjct: 477 D 477 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 55.3 bits (133), Expect = 1e-08 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 44/216 (20%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII-LDGKNIYQSSV 80 L +I+ K+ + + A+ G +G GKS+ L + GE+ +GK Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLM------------MIMGELEPSEGK------- 482 Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134 ++ R+ Q P +I DN+ +G D+ S+ KA Sbjct: 483 --IKHSGRISFSPQTSWIMPGTIKDNIIFG----------LSYDEYRYTSVIKACQLEED 530 Query: 135 -SLFNEVKDR--LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV-E 190 +LF E KD+ L LSGGQ+ R+ +ARA+ + ++ L+D P + LD + + E Sbjct: 531 IALFPE-KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589 Query: 191 ELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGH 226 + +L + T ++VT ++ + + + + H G Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGV 624 Score = 54.9 bits (132), Expect = 2e-08 Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 22/212 (10%) Query: 6 KMISNKVSVCYGE--KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 +M ++ Y E + L D++ + L+G +G GKST L L R+ T Sbjct: 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST----- 1271 Query: 64 FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADI 123 GEI +DG + +SV + R G++ Q+ F + N+ + + +I Sbjct: 1272 -EGEIQIDG--VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW-----SDEEI 1323 Query: 124 DQIV-EMSLKKASLFNEVKDRL---FHDAS-LLSGGQQQRVCIARALAVNPEVILMDEPC 178 ++ E+ LK S+ + D+L D +LS G +Q +C+AR++ +++L+DEP Sbjct: 1324 WKVAEEVGLK--SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381 Query: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQ 210 + LDP+ + + + + + T+++ H ++ Sbjct: 1382 AHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 53.5 bits (129), Expect = 5e-08 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS-M 209 LSGG QQ+V IA+ L +P+++++DEP +D A + +LI + V+ S + Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 Query: 210 QQAARVSQRAAMFHMGHLVEE 230 ++ +++ R + H G + Sbjct: 464 EEIEQMADRVLVMHQGEISGA 484 Score = 48.5 bits (116), Expect = 1e-06 Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 29/238 (12%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S Y L I+ + V AL+G +G GKST ++ + + D +G + + Sbjct: 17 ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-VPPD----SGTLEIG 71 Query: 72 GKNIYQSSVDVVRLRARVG--MVFQRPNPFPK-SIYDNVAYG-PRIHGLGNNKADIDQIV 127 G + + ++G +V Q P FP S+ +N+ +G P+ + + Sbjct: 72 GNPCARLTPA---KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128 Query: 128 EMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATA 187 L S A L +Q V I R L + ++++DEP ++L P T Sbjct: 129 GCQLDLDSS-----------AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177 Query: 188 SVEELIHELR-ESLTIVIVTHSMQQAARVSQRAAMFHMGHLV-----EEDDTDKMFTA 239 + I EL + + IV ++H + + +++ R ++ G + + TD + A Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQA 235 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 51.3 bits (123), Expect = 2e-07 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96 ++G +G GKST L RM E V GEI ++G+ I + + LR + M+ Q P Sbjct: 1341 IVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREI--GAYGLRELRRQFSMIPQDP 1393 Query: 97 NPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQ 156 F ++ NV P + ++V + + AS + R+ S S GQ+ Sbjct: 1394 VLFDGTVRQNV--DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 Query: 157 QRVCIARA-LAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAARV 215 Q +C+ARA L ILMDE + +DP ++ + + T++ + H + A+ Sbjct: 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQY 1511 Query: 216 SQRAAMFH 223 + M H Sbjct: 1512 DKIIVMDH 1519 Score = 48.6 bits (116), Expect = 2e-06 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIHELRESLTIVIVTHSM 209 LSGGQ+ RV +ARA+ N +V L+D+P SALD + VEE T V+ TH + Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842 Query: 210 QQAARVSQRAAM 221 R A+ Sbjct: 843 HVVPRADYVVAL 854 Score = 36.3 bits (84), Expect = 0.008 Identities = 13/34 (38%), Positives = 23/34 (67%) Query: 19 KRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL 52 K L D+++ +P+ +T ++G +G GKST L+ L Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL 706 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 50.3 bits (120), Expect = 4e-07 Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 35/223 (15%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRC---LNRMNETIDNCVFTGEIILDGKNIYQ 77 AL I+L+I Q + ++G +GCGKST + L E GEI+LDG + Sbjct: 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE--------GEILLDGAAVSA 408 Query: 78 SSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLF 137 S D R + F D + I A +D + L++ + Sbjct: 409 DSRDDYR------------DLFSAIFADFHLFDDLIGPDEGEHASLDN-AQQYLQRLEIA 455 Query: 138 NEVK--DRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATASVEELIH 194 ++VK D F + LS GQQ+R+ + A + ++L DE + DP EEL+ Sbjct: 456 DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 Query: 195 EL-RESLTIVIVTHS---MQQAARVSQRAAMFHMGHLVEEDDT 233 +L R+ TI+I++H + A ++ + AA G +V++ + Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAA----GCIVKDTEC 554 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 50.2 bits (120), Expect = 5e-07 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 13/203 (6%) Query: 11 KVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEII 69 VSV +K L +NL++ V A++GP+G GKST L R + + G + Sbjct: 8 HVSV--EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG----GTVE 61 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFP---KSIYDNVAYGPRIHGLGNNKADIDQI 126 GK++ + S + R + M FQ P P + A G D Sbjct: 62 FKGKDLLELSPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120 Query: 127 VEMSLKKASLFNEVKDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIA 185 ++ +K +L +D L ++ SGG+++R I + + PE+ ++DE S LD A Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180 Query: 186 TASVEELIHELR-ESLTIVIVTH 207 V + ++ LR + +IVTH Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTH 203 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 47.5 bits (114), Expect = 3e-06 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 148 ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT---IVI 204 LS GQQ+RV +AR + ++DEP +A+D V L L + +VI Sbjct: 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID---KQGVARLEALLAQHAEQGGMVI 183 Query: 205 VT--HSMQQAA 213 +T + A+ Sbjct: 184 LTTHQDLPVAS 194 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 47.4 bits (113), Expect = 3e-06 Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 42/208 (20%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83 ++ ++P + + GP+GCGKS+ R L + V+ G + K Sbjct: 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPAKG--------- 515 Query: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL---GNNKADIDQIVEMS-----LKKAS 135 ++ V QRP ++ D + Y + G + D++QI++ L++ Sbjct: 516 ----KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREG 571 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 ++ V+D + +LSGG++QR+ +AR P+ ++DE SA+ VE ++ Sbjct: 572 GWSAVQDWM----DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYR 623 Query: 196 LRESLTIVIVTHSMQQAARVSQRAAMFH 223 L I + + VS R +++ Sbjct: 624 LCREFGITLFS--------VSHRKSLWK 643 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 46.9 bits (112), Expect = 4e-06 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 25/201 (12%) Query: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 V+ Y + ++ INL I + + LIG +G GKST L + + +GEI+L Sbjct: 328 VTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----QSGEILL 382 Query: 71 DGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMS 130 DGK + ++ R VF + F + + GP K +VE Sbjct: 383 DGKPV--TAEQPEDYRKLFSAVFTDFHLFDQLL------GPE------GKPANPALVEKW 428 Query: 131 LKKASLFN--EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP-IATA 187 L++ + + E++D + LS GQ++R+ + ALA +++L+DE + DP Sbjct: 429 LERLKMAHKLELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 Query: 188 SVEELIHELRES-LTIVIVTH 207 + L+ L+E TI ++H Sbjct: 488 FYQVLLPLLQEMGKTIFAISH 508 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 47.0 bits (112), Expect = 5e-06 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 47/207 (22%) Query: 14 VCY-----GEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGE 67 + Y EKR + + ++ + ++TAL+G SG GK+T L L E + V TG Sbjct: 765 LTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA---ERVTTGVITGG 821 Query: 68 IILDGKNIYQSSV----------DV------VRLRARVGMVFQRPNPFPKS-IYDNVAYG 110 L SS D+ VR R ++P KS + V Sbjct: 822 DRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE- 880 Query: 111 PRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPE 170 + +++EM ++ L+ Q++R+ I L P+ Sbjct: 881 ------------VIKLLEMESYADAVVGVP-------GEGLNVEQRKRLTIGVELVAKPK 921 Query: 171 VIL-MDEPCSALDPIATASVEELIHEL 196 ++L +DEP S LD S+ +L+ +L Sbjct: 922 LLLFLDEPTSGLDSQTAWSICKLMRKL 948 Score = 36.6 bits (85), Expect = 0.006 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVT 206 SGG+++RV IA A ++ D LD ATA E I L+ S I+ T Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDS-ATAL--EFIRALKTSANILDTT 262 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 46.2 bits (110), Expect = 8e-06 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 138 NEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL- 196 D FH LS GQQ+ I RAL +P ++++DEP LDP+ V + L Sbjct: 392 KRTADAPFHS---LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI 448 Query: 197 RESLT-IVIVTHSMQQA 212 E T ++ V+H + A Sbjct: 449 SEGETQLLFVSHHAEDA 465 Score = 38.8 bits (91), Expect = 0.001 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 57/203 (28%) Query: 26 NLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL-DGKNIYQSSVD-VV 83 +L + A +G +G GKS R L GE+ L G+ QS + Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL------------AGELPLLSGE--RQSQFSHIT 68 Query: 84 RL-----RARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 RL + V +QR N P G A+I Q + Sbjct: 69 RLSFEQLQKLVSDEWQRNN--------TDMLSPGEDDTGRTTAEIIQ------------D 108 Query: 139 EVKDR--------LFHDASLL-------SGGQQQRVCIARALAVNPEVILMDEPCSALDP 183 EVKD F +LL S G+ ++ + +AL P+++++DEP LD Sbjct: 109 EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDV 168 Query: 184 IATASVEELIHEL-RESLTIVIV 205 + + EL+ L + +T+V+V Sbjct: 169 ASRQQLAELLASLHQSGITLVLV 191 Score = 29.2 bits (66), Expect = 1.1 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFL 49 N V Y ++ L +++ ++ ++GP+G GKST L Sbjct: 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL 303 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 44.1 bits (104), Expect = 3e-05 Identities = 20/39 (51%), Positives = 24/39 (61%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 LS Q++R+ IA L NP +I MDEP S LD A A V Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058 Score = 29.4 bits (66), Expect = 0.82 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 52/231 (22%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEIILDGKNI----- 75 L D + I + +T L+GP GK+T L L +++ ++ +GEI +G + Sbjct: 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLK---VSGEITYNGYRLNEFVP 237 Query: 76 YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGN------------NKADI 123 ++S + + VG++ ++ + + + R G+G A I Sbjct: 238 RKTSAYISQNDVHVGVM---------TVKETLDFSARCQGVGTRYDLLSELARREKDAGI 288 Query: 124 DQIVEMSL-KKASLFNEVKDRLFHDASL--------------------LSGGQQQRVCIA 162 E+ L KA+ VK L D +L +SGGQ++RV Sbjct: 289 FPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG 348 Query: 163 RALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHSMQQAA 213 + + + MDE + LD T + + + ++ LT V S+ Q A Sbjct: 349 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH-LTEATVLMSLLQPA 398 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 42.9 bits (101), Expect = 8e-05 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 30/217 (13%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 AL DI+LK + V L+G +G GKST N + ++ V G++ +G+ V Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLS---NIIGGSLSPTV--GKVDRNGE------V 87 Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNN--KADIDQIVEMSLKKASLFN 138 V+ + A G+ Q +N+ + G KA +I+E F+ Sbjct: 88 SVIAISA--GLSGQLTG------IENIEFKMLCMGFKRKEIKAMTPKIIE--------FS 131 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 E+ + ++ S G + ++ + + VNP+++++DE S D + I+E +E Sbjct: 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191 Query: 199 S-LTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTD 234 TI V+H++ Q + + A G L + + D Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 42.5 bits (100), Expect = 1e-04 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS 208 SGG + R+ +ARAL + P+++L+DEP + LD A +E + L+ T ++V+H+ Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHA 400 Score = 39.5 bits (92), Expect = 8e-04 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL 196 LSGGQ+ RV A+ P ++L+DEP + LD A VE LI L Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGL 670 Score = 30.2 bits (68), Expect = 0.49 Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVF 64 ++N I +S A++GP+G GKST L+ ++ + VF Sbjct: 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 42.6 bits (100), Expect = 1e-04 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES-LTIVIVTHSMQ 210 S G + R+ A ++ +NP+++++DE S D T + ++E +E TI ++HS+ Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 Query: 211 QAARVSQRAAMFHMGHLVEEDDTDKMFT 238 Q +A H G + E D ++ Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVD 232 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 42.2 bits (99), Expect = 1e-04 Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 30/197 (15%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI 75 Y ++ L I+ +P + L G +G GK+T L+ + + GEI+ + ++I Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-----KGEILFERQSI 65 Query: 76 ------YQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 YQ + V R+ + NP+ ++ +N Y IH I ++ Sbjct: 66 KKDLCTYQKQLCFVGHRSGI-------NPY-LTLRENCLYD--IH-FSPGAVGITELC-- 112 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 LF ++ + + LLS GQ+++V + R ++ L+DEP ALD ++ ++ Sbjct: 113 -----RLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166 Query: 190 EELIHELRESLTIVIVT 206 I E R V++T Sbjct: 167 ITKIQEHRAKGGAVLLT 183 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 39.8 bits (93), Expect = 7e-04 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 11/108 (10%) Query: 151 LSGGQQQRVCIARALAVNPEVI--LMDEPCSALDPIATASVEELIHELR-ESLTIVIVTH 207 LSGG+Q+R +A+ L I ++DEP L P T + +I +LR + T+++V H Sbjct: 477 LSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH 536 Query: 208 SMQQ---AARV---SQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 Q A R+ A +F G V + + + F A SD T Y+ Sbjct: 537 DEQMISLADRIIDIGPGAGIF--GGEVLFNGSPREFLAKSDSLTAKYL 582 Score = 32.5 bits (74), Expect = 0.10 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Query: 151 LSGGQQQRVCIARALAVNPE--VILMDEPCSALDPIATASVEELIHELRESLTIVIVT-- 206 LS G+ R+ +A+ ++ N + L+++P S L P ++ +LI EL + VI T Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDR 1447 Query: 207 -HSMQQAA 213 S+ + A Sbjct: 1448 SGSLAEHA 1455 Score = 30.6 bits (69), Expect = 0.42 Identities = 11/25 (44%), Positives = 19/25 (76%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFL 49 I+L +P+N++TA+ GPS GK + + Sbjct: 954 IDLSLPRNALTAVTGPSASGKHSLV 978 Score = 27.5 bits (61), Expect = 3.6 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 +++ K L D+ + +P +T + G SG GKS+ + N+T+ V Sbjct: 601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLI------NDTLVPAV 646 Score = 26.7 bits (59), Expect = 5.4 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 149 SLLSGGQQQRVCIARALAVNPE---VILMDEPCSALDPIATASVEELIHEL-RESLTIVI 204 S LS ++ + IA+ L + P+ + L+DE ++LD +++ + L +++ Sbjct: 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 Query: 205 VTHSMQ 210 + H Sbjct: 1758 IDHDPA 1763 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 39.1 bits (92), Expect = 0.001 Identities = 22/51 (43%), Positives = 38/51 (74%), Gaps = 4/51 (7%) Query: 158 RVCIARALAVNPEVILMDEPCSALDPIATAS-VEELIHELRESLTIVIVTH 207 RV +A+AL NP+++L+DEP + LD I T +E++++E R S T++I++H Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD-INTIRWLEDVLNE-RNS-TMIIISH 210 Score = 36.0 bits (84), Expect = 0.009 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 18 EKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCL 52 + LF ++NL + A+IG +G GK+T LR L Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTL 365 Score = 33.7 bits (78), Expect = 0.046 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Query: 7 MIS-NKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCL 52 M+S +++ +G K LF+ I++K + LIG +GCGKSTF++ L Sbjct: 1 MLSTANITMQFGAK-PLFENISVKFGGGNRYGLIGANGCGKSTFMKIL 47 Score = 31.0 bits (71), Expect = 0.33 Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALD 182 LSGG++ R+ + + P V++MDEP + +D Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 37.5 bits (87), Expect = 0.004 Identities = 56/240 (23%), Positives = 90/240 (37%), Gaps = 76/240 (31%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRP 96 L+G +GCGKST L L EI DG + ++ V Q Sbjct: 32 LVGKNGCGKSTLLALLK------------NEISADGGSYTFPG------NWQLAWVNQET 73 Query: 97 NPFPKSIYDNVAYGPR-----------------------IHGLGNNKADIDQIVEMSLKK 133 P+ + V G R IHG K D + + Sbjct: 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHG----KLDAIDAWTIRSRA 129 Query: 134 ASLFNEV---KDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE 190 ASL + + ++L S SGG + R+ +A+AL +++L+DEP + LD A +E Sbjct: 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE 189 Query: 191 E----------LIHELRESLTIVI--VTH----------------SMQQAARVSQRAAMF 222 + LI R+ L ++ + H +Q+A R++Q+ AM+ Sbjct: 190 KWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMY 249 Score = 35.5 bits (82), Expect = 0.012 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 2 NQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL 52 N + KM KVS YG++ L I L + S L+G +G GKST ++ L Sbjct: 310 NPLLKM--EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL 358 Score = 29.4 bits (66), Expect = 0.85 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 20/65 (30%) Query: 152 SGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT---------I 202 SGG++ R+ +A + P ++L+DEP + LD ++R++LT + Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-----------LDMRQALTEALIDFEGAL 480 Query: 203 VIVTH 207 V+V+H Sbjct: 481 VVVSH 485 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 37.2 bits (86), Expect = 0.005 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 27/162 (16%) Query: 18 EKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCL-NRMNETIDNCVFTGEIILDGKNIY 76 E++ LFD+++ +++T + G +GCGKS+ LR + M + NIY Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-------------SGNIY 58 Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK--ADIDQIVEMSLKKA 134 + ++ + P+ I N+ + N K ++I E +L A Sbjct: 59 YKNCNINNI----------AKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE-TLYAA 107 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDE 176 + ++ D L LS G Q+ V IAR +A ++ L+DE Sbjct: 108 IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 35.0 bits (80), Expect = 0.019 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 31 QNSVTALIGPSGCGKSTFLRCL 52 V ++GP G GK+T R L Sbjct: 1 PGEVILIVGPPGSGKTTLARAL 22 Score = 34.7 bits (79), Expect = 0.025 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 151 LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH-------ELRESLTIV 203 SG + R+ +A A + P+V+++DE S LD A + L + ++LT++ Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120 Query: 204 IVTH 207 + T+ Sbjct: 121 LTTN 124 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 33.8 bits (78), Expect = 0.042 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 29/112 (25%) Query: 123 IDQIVEMSLKKASLFNE------VKDRLFHDASL-----------LSGGQQQRVCIARAL 165 I +++M++++A F E K + D L LSGG+ QR+ +A+ L Sbjct: 784 IADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 843 Query: 166 ---AVNPEVILMDEPCSALDPIATASVEELIHELRESL-----TIVIVTHSM 209 + + ++DEP + L +++L+ L + L T+V++ H++ Sbjct: 844 SKRSTGRTLYILDEPTTGLH---FDDIKKLLEVL-QRLVDQGNTVVVIEHNL 891 Score = 33.5 bits (77), Expect = 0.063 Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFL 49 L +I + IP T + G SG GKST + Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLI 650 Score = 29.2 bits (66), Expect = 1.1 Identities = 10/26 (38%), Positives = 19/26 (73%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKST 47 L +I+++IP++ + + G SG GKS+ Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSS 37 Score = 29.2 bits (66), Expect = 1.2 Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 45/181 (24%) Query: 112 RIHGLGNNKADIDQIVEMSLKKASLF------------------NEVKDRLF-------- 145 ++ G I + E+S+++A F E+K+RL Sbjct: 423 KVGGK-----SIADVSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLGFLIDVGLD 477 Query: 146 -----HDASLLSGGQQQRVCIARALAVNPEVIL--MDEPCSALDPIATASVEELIHELRE 198 A LSGG+ QR+ +A + +L +DEP L + + LR+ Sbjct: 478 YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD 537 Query: 199 SLTIVIVTHSMQQAARVSQR------AAMFHMGHLVEEDDTDKMFTAPSDQRTQDYIMGR 252 VIV ++ R + A H G +V T + A D T Y+ G+ Sbjct: 538 LGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVAS-GTPEEILANPDSLTGQYLSGK 596 Query: 253 F 253 Sbjct: 597 K 597 >gnl|CDD|163593 TIGR03881, KaiC_arch_4, KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. Length = 229 Score = 33.2 bits (76), Expect = 0.062 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 17/72 (23%) Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDG-KNIY----QSSVDVV 83 IP+ A+ G G GK+ F CL+ F + + DG IY +S ++ Sbjct: 17 IPRGFFVAVTGEPGTGKTIF--CLH----------FAYKGLRDGDPVIYVTTEESRESII 64 Query: 84 RLRARVGMVFQR 95 R A+ GM F++ Sbjct: 65 RQAAQFGMDFEK 76 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 32.5 bits (74), Expect = 0.094 Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 41/202 (20%) Query: 36 ALI--GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVRLRARVGMVF 93 AL+ G +G GK+T LR L + V +G+I +DGK + D R A +G + Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTA--TRGDRSRFMAYLGHL- 90 Query: 94 QRPNPFPK---SIYDNVAYGPRIHGL------GNNKADIDQIVEMSLKKASLFNEVKDRL 144 P K S +N+ + +HG G+ A IV ++ + +L + Sbjct: 91 ----PGLKADLSTLENLHFLCGLHGRRAKQMPGSALA----IVGLAGYEDTLVRQ----- 137 Query: 145 FHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH-ELRESLTIV 203 LS GQ++R+ +AR + L+DEP + LD V +I LR + Sbjct: 138 ------LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAAL 191 Query: 204 IVTHSMQQAARVSQRAAMFHMG 225 + TH A V R M + Sbjct: 192 VTTHGAYAAPPVRTR--MLTLE 211 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 31.8 bits (72), Expect = 0.18 Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 12/78 (15%) Query: 151 LSGGQQQ------RVCIARALAVNPEVILMDEPCSALDPIATASVEELI-HELRESLTI- 202 LSGG++ RV +A+ L + +++MDEP + LD +++++I + L++S I Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861 Query: 203 --VIVTH--SMQQAARVS 216 ++++H + A V+ Sbjct: 862 QVIMISHHRELLSVADVA 879 >gnl|CDD|148381 pfam06745, KaiC, KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Length = 231 Score = 31.1 bits (71), Expect = 0.31 Identities = 8/20 (40%), Positives = 11/20 (55%) Query: 29 IPQNSVTALIGPSGCGKSTF 48 IP+ V + G G GK+ F Sbjct: 16 IPEGRVVLITGGPGTGKTIF 35 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 30.8 bits (71), Expect = 0.40 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNET 58 +++++IP T + G SG GKST +NET Sbjct: 627 NVDVEIPLGKFTCVTGVSGSGKSTL------INET 655 Score = 30.4 bits (70), Expect = 0.40 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKST 47 L +I+L IP++ + G SG GKS+ Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSS 41 Score = 28.5 bits (65), Expect = 2.0 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 31/75 (41%) Query: 119 NKADIDQIVEMSLKKASLF------------------NEVKDRLF-------------HD 147 +I ++ E+S+ +A F E+++RL Sbjct: 427 GGKNIGEVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDVGLDYLTLSRS 486 Query: 148 ASLLSGGQQQRVCIA 162 A LSGG+ QR+ +A Sbjct: 487 AGTLSGGEAQRIRLA 501 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 30.0 bits (68), Expect = 0.61 Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 31 QNSVTALIGPSGCGKS 46 +T ++GP+GCGKS Sbjct: 22 DKGITGIVGPNGCGKS 37 >gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. Length = 270 Score = 30.0 bits (68), Expect = 0.67 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 29 IPQNSV--TALIGPSGCGKSTFLRCLNRM 55 + N V T +I P CGK+T LR L R+ Sbjct: 106 VRNNRVLNTLIISPPQCGKTTLLRDLARI 134 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 29.9 bits (67), Expect = 0.67 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query: 147 DASLLSGGQQQRVCIARALAV----------NPEVILMDEPCSALDPIATASVEELIHEL 196 ++ LSGG+ ++ ALA+ + + +DE +LD + ++ + Sbjct: 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006 Query: 197 RE-SLTIVIVTHSMQQAARVSQR 218 RE S I I++H + R+ R Sbjct: 1007 REGSKMIGIISHVPEFRERIPHR 1029 >gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 767 Score = 29.8 bits (67), Expect = 0.68 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 11/39 (28%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFL-----RCLNR 54 AL Q V AL+GP+G GK+T RC+ R Sbjct: 180 ALLA------QGGVLALVGPTGVGKTTTTAKLAARCVAR 212 >gnl|CDD|128431 smart00126, IL6, Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2. Length = 154 Score = 29.7 bits (67), Expect = 0.76 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 14/85 (16%) Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGP-SGCGKSTFLR--CLNRMNETID 60 + K + N+ S+C + AL + NLK+P+ + GC +S F + CL + I Sbjct: 11 LRKELCNRFSLCENSEEALAENNLKLPK------MNEKDGCFQSGFNQEICLVK----IT 60 Query: 61 NCVFTGEIILDG-KNIYQSSVDVVR 84 + ++ L+ +N + + + V Sbjct: 61 AGLLEYQVYLEYLQNEFPENKENVD 85 >gnl|CDD|177982 PLN02348, PLN02348, phosphoribulokinase. Length = 395 Score = 29.8 bits (67), Expect = 0.78 Identities = 11/17 (64%), Positives = 12/17 (70%) Query: 34 VTALIGPSGCGKSTFLR 50 V L SGCGKSTF+R Sbjct: 51 VIGLAADSGCGKSTFMR 67 >gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed. Length = 352 Score = 29.6 bits (67), Expect = 0.83 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 31 QNSVTALIGPSGCGKSTFLRCL 52 +N +T + GPSG GKS+ + L Sbjct: 171 RNKITVVAGPSGVGKSSLINRL 192 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 29.6 bits (67), Expect = 0.86 Identities = 10/15 (66%), Positives = 12/15 (80%) Query: 36 ALIGPSGCGKSTFLR 50 + G SGCGK+TFLR Sbjct: 12 GVAGDSGCGKTTFLR 26 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 29.2 bits (66), Expect = 0.97 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSV---TALIGPSGCGKSTFL 49 +++ + F N + V T + GP+G GK+T L Sbjct: 409 PALTLLKTQSGTPFYFNFHVRDAKVLGHTLIFGPTGSGKTTLL 451 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 29.0 bits (66), Expect = 1.1 Identities = 11/19 (57%), Positives = 11/19 (57%) Query: 31 QNSVTALIGPSGCGKSTFL 49 VT L G SG GKST L Sbjct: 163 AGKVTVLAGQSGVGKSTLL 181 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 29.1 bits (66), Expect = 1.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Query: 37 LIGPSGCGKSTFLRCLN 53 LIG SGCGK+T + LN Sbjct: 6 LIGRSGCGKTTLTQALN 22 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 29.1 bits (66), Expect = 1.3 Identities = 9/12 (75%), Positives = 10/12 (83%) Query: 36 ALIGPSGCGKST 47 AL+G SG GKST Sbjct: 199 ALLGSSGVGKST 210 >gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional. Length = 412 Score = 28.6 bits (65), Expect = 1.7 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%) Query: 37 LIGPSGCGKSTFL-RCLNRM 55 LIGP+G GK T L + L R+ Sbjct: 113 LIGPTGSGK-TLLAQTLARI 131 >gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional. Length = 482 Score = 28.6 bits (64), Expect = 1.7 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Query: 183 PIATASVEELIHELRESLTIVIVTHSM------QQAARVSQRAAMF--HMGHLVEE 230 P+AT S E L L+ L I S AA+ ++A F GH V E Sbjct: 234 PLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQGHEVVE 289 >gnl|CDD|130674 TIGR01613, primase_Cterm, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. Length = 304 Score = 28.5 bits (64), Expect = 1.8 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 12/51 (23%) Query: 37 LIGPSGCGKSTFLRCLNRM----NETIDNCVF--------TGEIILDGKNI 75 L G G GKSTF L+ + T + G L+GK Sbjct: 81 LYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHRFGLARLEGKRA 131 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 28.4 bits (63), Expect = 2.1 Identities = 10/18 (55%), Positives = 15/18 (83%) Query: 37 LIGPSGCGKSTFLRCLNR 54 + GPSGCGKST ++ L++ Sbjct: 115 ITGPSGCGKSTTIKILSK 132 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 28.1 bits (62), Expect = 2.3 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 35 TALIGPSGCGKSTFLRCLN 53 T L+GP+G GK+T + CL Sbjct: 31 TILVGPNGAGKTTIIECLK 49 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 28.1 bits (63), Expect = 2.6 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 37 LIGPSGCGKSTFLR 50 +IGP G GK+T L+ Sbjct: 116 VIGPPGSGKTTLLQ 129 >gnl|CDD|148113 pfam06307, Herpes_IR6, Herpesvirus IR6 protein. This family consists of several Herpesvirus IR6 proteins. The equine herpesvirus 1 (EHV-1) IR6 protein forms typical rod-like structures in infected cells, influences virus growth at elevated temperatures, and determines the virulence of EHV-1 Rac strains. Length = 214 Score = 28.0 bits (62), Expect = 2.7 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Query: 30 PQNSVTALIGPSGC--GKSTFLRCLNRMNE 57 + AL P G G+S F RC MNE Sbjct: 1 ASAARKALFNPDGGMLGRSYFRRCREEMNE 30 >gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional. Length = 205 Score = 27.7 bits (63), Expect = 2.8 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 39 GPSGCGKSTFLRCL 52 GPSG GKST ++ L Sbjct: 12 GPSGAGKSTLVKAL 25 >gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 420 Score = 27.6 bits (61), Expect = 2.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 29 IPQNSVTALIGPSGCGKST 47 I Q V ALIGP+G GK+T Sbjct: 188 IEQGGVYALIGPTGVGKTT 206 >gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 361 Score = 27.6 bits (62), Expect = 3.0 Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 37 LIGPSGCGKSTFLRCLNR 54 L+GP G GKS+ + CL R Sbjct: 83 LLGPVGGGKSSLVECLKR 100 >gnl|CDD|133906 PHA00490, PHA00490, terminal protein. Length = 266 Score = 27.6 bits (61), Expect = 3.0 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 114 HGLGNNKADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQ 157 +G+ +KA ID+I + + + +E+ DR F+D ++SGG+ Q Sbjct: 82 YGVVASKAKIDEIESNTKEAQRVVDEILDR-FNDKEVISGGKSQ 124 >gnl|CDD|183591 PRK12555, PRK12555, chemotaxis-specific methylesterase; Provisional. Length = 337 Score = 27.5 bits (62), Expect = 3.2 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 161 IARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLT-IVIVTHSMQQAARVSQRA 219 + R A P+VILMD +D VE + E I+IVT ++ A A Sbjct: 39 VERCAAQPPDVILMDLEMPRMD-----GVEATRRIMAERPCPILIVTSLTERNASRVFEA 93 Query: 220 AMFHMGH 226 MG Sbjct: 94 ----MGA 96 >gnl|CDD|177581 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional. Length = 828 Score = 27.6 bits (62), Expect = 3.2 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Query: 37 LI-GPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQ 77 LI G +G GKST ++ L NE +D CV TG + +N+ Sbjct: 75 LITGTAGAGKSTSIQTL---NENLD-CVITGATRVAAQNLSA 112 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 27.5 bits (62), Expect = 3.5 Identities = 8/11 (72%), Positives = 8/11 (72%) Query: 37 LIGPSGCGKST 47 LIG G GKST Sbjct: 9 LIGFMGAGKST 19 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 27.4 bits (61), Expect = 3.6 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%) Query: 28 KIPQNSVTALI-GPSGCGKSTFLRCL 52 +T LI G SG GK+T L Sbjct: 10 LCGGGMITVLIDGRSGSGKTTLAGAL 35 >gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 139 Score = 27.3 bits (61), Expect = 3.6 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%) Query: 37 LIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 L+GP G GKS R+ + N Sbjct: 4 LVGPPGTGKSELAE---RLAAALSNRPVF 29 >gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. Length = 224 Score = 27.4 bits (61), Expect = 3.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 29 IPQNSVTALIGPSGCGKSTF 48 P+ V +IG G GK+TF Sbjct: 13 FPEGHVIVVIGEYGTGKTTF 32 >gnl|CDD|183503 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed. Length = 337 Score = 27.3 bits (61), Expect = 3.7 Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 37 LIGPSGCGKSTFLRCLNR 54 + GP G GK+ +R L R Sbjct: 41 VQGPPGSGKTAAVRALAR 58 >gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase. Length = 347 Score = 27.4 bits (61), Expect = 4.0 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 9/43 (20%) Query: 34 VTALIGPSGCGKSTFLRCLNRMNET---------IDNCVFTGE 67 V + P GCGK+T + L + ID+ T Sbjct: 102 VIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAA 144 >gnl|CDD|182496 PRK10490, PRK10490, sensor protein KdpD; Provisional. Length = 895 Score = 27.3 bits (61), Expect = 4.0 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 164 ALAVNPEVILMDE-----PCSALDPIATASVEELIHELRESLTIVIVTH 207 ALA P +ILMDE + P VEEL+ + T V V H Sbjct: 98 ALARRPALILMDELAHSNAPGSRHPKRWQDVEELLEAGIDVFTTVNVQH 146 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 27.1 bits (60), Expect = 4.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 23 FDINLKIPQNSVTALIGPSGCGKSTFL 49 F +NL + T + GP+G GKST L Sbjct: 447 FRLNLHVDDVGHTLIFGPTGSGKSTLL 473 >gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae. Length = 792 Score = 27.1 bits (60), Expect = 4.3 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Query: 74 NIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 N+ QS +D++ LR + P NV G ++ LG++ I ++ Sbjct: 521 NLRQSILDLLGLRLSLNGSALAGAPLSG---INVIDGSKVSFLGHSLGGIVGTSFIAYAN 577 Query: 134 ASLFNEVKDRLF--HDASLLSGGQQQRVCIARALAVNPE 170 L + D L+ + ASL + G IA L +P+ Sbjct: 578 TPLGSPTADALYAVNAASLQNPGGG----IANFLLGSPD 612 >gnl|CDD|181106 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated. Length = 824 Score = 27.3 bits (61), Expect = 4.5 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 4/19 (21%) Query: 39 GPSGCGKST----FLRCLN 53 GP GCGK++ R LN Sbjct: 44 GPRGCGKTSSARILARSLN 62 >gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown. Length = 442 Score = 26.9 bits (59), Expect = 4.7 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 169 PEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTHS--------MQQAARVSQRA 219 PE+ + C L I ++ +EEL LR + V ++ +QAA+ +Q A Sbjct: 263 PELASIRRACDHLPGIMSSKIEELARGLRADIERVARENADLQRQKLEAEQAAQAAQEA 321 >gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. Length = 180 Score = 27.1 bits (61), Expect = 5.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 39 GPSGCGKSTFLRCL 52 GPSG GKST ++ L Sbjct: 8 GPSGVGKSTLVKAL 21 >gnl|CDD|184916 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional. Length = 584 Score = 26.8 bits (59), Expect = 6.0 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 4/19 (21%) Query: 39 GPSGCGKST----FLRCLN 53 GP GCGK++ R LN Sbjct: 42 GPRGCGKTSSARILARSLN 60 >gnl|CDD|163297 TIGR03503, TIGR03503, conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal. Length = 374 Score = 26.5 bits (59), Expect = 6.2 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 55 MNETIDNCVFTGEIILD---GKNIYQ-SSVDVVRLRARVGMVFQRPNP 98 ++E + +FTGE LD G+ S + V LR V P P Sbjct: 164 LDERPGDGIFTGEFNLDVAPGEYRPTYQSRNPVFLREVEQPVLVYPLP 211 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 26.5 bits (58), Expect = 6.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 31 QNSVTALIGPSGCGKST 47 + V AL+GP+G GK+T Sbjct: 349 RGGVIALVGPTGAGKTT 365 >gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. Length = 142 Score = 26.6 bits (59), Expect = 7.1 Identities = 8/18 (44%), Positives = 10/18 (55%) Query: 36 ALIGPSGCGKSTFLRCLN 53 IG GCGK+T + L Sbjct: 4 MFIGSVGCGKTTLTQALQ 21 >gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional. Length = 367 Score = 26.5 bits (59), Expect = 7.2 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLR 50 L+D + N + L G G GKST ++ Sbjct: 21 LYDSIID-GANRIFILKGGPGTGKSTLMK 48 >gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 484 Score = 26.5 bits (59), Expect = 7.3 Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 31 QNSVTALIGPSGCGKST 47 + V AL+GP+G GK+T Sbjct: 255 RGGVFALMGPTGVGKTT 271 >gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional. Length = 213 Score = 26.5 bits (59), Expect = 7.6 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Query: 93 FQRPNPFPKSIYDNVAYGP--RIHGLGNNKADID 124 + + P+PKS + P RI+ +G KA +D Sbjct: 11 YCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVD 44 >gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. Length = 486 Score = 26.2 bits (58), Expect = 8.3 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Query: 39 GPSGCGKSTFL-RCLNRMNETIDNCVFTGE--IILDGKNIYQSSVDVVRLRARVGMVFQR 95 GP+G GK+T L L+R+N N + T E + + I Q V+ ++G+ F Sbjct: 249 GPTGSGKTTTLYAALSRLNTPERN-ILTVEDPVEYQIEGIGQIQVN-----PKIGLTFAA 302 >gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional. Length = 288 Score = 26.2 bits (59), Expect = 8.5 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Query: 39 GPSGCGKSTFLRCLNRMN-ETIDN 61 G SG GKS LR L + +DN Sbjct: 13 GLSGAGKSVALRALEDLGYYCVDN 36 >gnl|CDD|161829 TIGR00342, TIGR00342, thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis. Length = 371 Score = 26.2 bits (58), Expect = 8.7 Identities = 11/28 (39%), Positives = 15/28 (53%) Query: 186 TASVEELIHELRESLTIVIVTHSMQQAA 213 T EE+IH + E T V+ M +AA Sbjct: 240 TDVQEEIIHIIPEGYTCVLCRRMMYKAA 267 >gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed. Length = 167 Score = 26.1 bits (58), Expect = 9.0 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Query: 37 LIGPSGCGKSTFLRCL-NRMN 56 LIG G GKST R L ++N Sbjct: 6 LIGSGGSGKSTLARQLGEKLN 26 >gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. Length = 249 Score = 25.9 bits (57), Expect = 9.6 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 37 LIGPSGCGKSTFLRCLNRM--NETIDNCVFTGEII 69 L G G GKSTF + L + + ID + ++I Sbjct: 4 LTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 >gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). Length = 245 Score = 25.8 bits (57), Expect = 9.8 Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 31 QNSVTALIGPSGCGKSTFL-RCLNRMNETIDN 61 QN ++ G SG GKS+ + + + +++ Sbjct: 119 QNRISVFAGQSGVGKSSLINALDPSVKQQVND 150 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,079,500 Number of extensions: 254642 Number of successful extensions: 1361 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1020 Number of HSP's successfully gapped: 362 Length of query: 254 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 163 Effective length of database: 4,028,145 Effective search space: 656587635 Effective search space used: 656587635 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.5 bits)