BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
         (254 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score =  530 bits (1364), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60
           MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID
Sbjct: 1   MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60

Query: 61  NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120
           NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK
Sbjct: 61  NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120

Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180
           ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA
Sbjct: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180

Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240
           LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP
Sbjct: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240

Query: 241 SDQRTQDYIMGRFG 254
           SDQRTQDYIMGRFG
Sbjct: 241 SDQRTQDYIMGRFG 254


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score =  124 bits (312), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%)

Query: 15  CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74
            YG   AL DINL + +     + GPSG GKST +RC+N + +        GEII++G  
Sbjct: 26  WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ-----AGEIIINGIP 80

Query: 75  IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
           +     ++  +R  VGMVFQ  N F   S+ +N   GP I      K D +++    L K
Sbjct: 81  LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKKDAEELAMHYLNK 139

Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
                ++ D+    +SLLSGG+ QR  IAR+L + P+++L DEP SALDP     V +++
Sbjct: 140 V----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195

Query: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
            EL  E +T+V VTH M  A +V+ R      G +VE++  ++ F  P  +RTQ ++
Sbjct: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 95.9 bits (237), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 24/245 (9%)

Query: 16  YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK-- 73
           YG   A+   NL++ +  +  L+G SG GKST LR +N +       V  GE+++D    
Sbjct: 39  YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93

Query: 74  --NIYQSSVDVVR-LRAR-VGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVE 128
             N Y +  +V+R LR   V MVFQ+    P +++  NV  G     + +        VE
Sbjct: 94  FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD--------VE 145

Query: 129 MSLKKASLFNEVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186
              + A     V    + D   ++LSGG +QRV  ARA A    ++LMDEP S+LDP+  
Sbjct: 146 RKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205

Query: 187 ASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244
             +++ +  L+  L  TIV V+H + +A R+  R A+   G +++     ++   P++  
Sbjct: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265

Query: 245 TQDYI 249
             ++I
Sbjct: 266 VSEFI 270


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 82.0 bits (201), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 24/230 (10%)

Query: 15  CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74
           CY   +  FD  +   +  V  ++GPSG GKST L  +             G I L+G+N
Sbjct: 10  CYDNLKMQFDFQVNKAERIV--ILGPSGAGKSTLLSLMAGFKYPT-----RGSIFLNGQN 62

Query: 75  IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYG--PRIHGLGNNKADIDQIVEMSL 131
             +SS      +  + ++FQ  N F   +++ N+A G  P +       A + Q++E   
Sbjct: 63  HTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF 118

Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191
            +   FN          S +SGGQ+QRV +AR L     ++L+DEP +  DP     +  
Sbjct: 119 LE-DFFNRF-------PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170

Query: 192 LIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239
           L+ ++     LT+++++H+++ + +++ R  +   G +V + D D++   
Sbjct: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNG 220


>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 262

 Score = 80.9 bits (198), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 32/212 (15%)

Query: 25  INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
           ++L +    +  L+GP+G GK+TF   +  +      C  +G I +DG +I  + + + R
Sbjct: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDI--TKMPMYR 96

Query: 85  LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRL 144
            RAR+G+ +    P   SI+  +            + +I  ++E+  K     +E  D L
Sbjct: 97  -RARLGISYL---PQEASIFRGLTV----------EENILAVLEVYEKDKKKRHEKLDSL 142

Query: 145 FHD----------ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
             +          A LLSGGQ++R+ IAR+L   P  IL+DEP + +DP+A + +  LI 
Sbjct: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202

Query: 195 EL-RESLTIVIVTHSMQQAARVSQRAAMFHMG 225
           +L    + I+I  H++ +   +  RA + H G
Sbjct: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAG 234


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 80.5 bits (197), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 24/240 (10%)

Query: 7   MISNKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
           ++ N VS  Y     +F  I+ +I  +  TALIG SG GKST  + L R+ +     +  
Sbjct: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-----IKG 411

Query: 66  GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125
           G I +DG++I + + +   LR  +G++ Q    F  ++  N+ YG        N    DQ
Sbjct: 412 GIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILYG--------NPNASDQ 461

Query: 126 IVEMSLKKASLFNEV------KDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPC 178
            +  +++ A L + +       D +  +  L LSGG++QRV IARA+  NP +I+ DE  
Sbjct: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521

Query: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238
           S+LD I    ++  +  L ++ T +++ H +      +    +F  G +VE    + + +
Sbjct: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580


>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 75.9 bits (185), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 15/207 (7%)

Query: 29  IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSVDVVRLRA 87
           I +  +  +IG SG GKS  +R +  +   +     +GE+ + G+++            A
Sbjct: 36  ILRGEILGVIGSSGTGKSILMRGILGLIPRV-----SGEVKVLGEHLNLAKGKQNFAFSA 90

Query: 88  RVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD-IDQIVEMSLKKASLFNEVKDRLF 145
           ++G++FQ    F   ++ +N++   + H   N  AD I+ IV   +    L  E  + + 
Sbjct: 91  KLGVLFQHGALFSSMTVQENISMPIKEHL--NLPADLIEHIVHTKIAIVGLPPETANLMP 148

Query: 146 HDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--LTIV 203
                LSGG  +RV +ARALA++P+++ +DEP S LDPIA    ++L+ +LR S  L++ 
Sbjct: 149 FQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205

Query: 204 IVTHSMQQAARVSQRAAMFHMGHLVEE 230
           ++TH +        R A+     +++E
Sbjct: 206 MITHDLNNLISTCNRVAVIQKKGIMKE 232


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 75.5 bits (184), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 22/194 (11%)

Query: 21  ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80
            L  INL      +TAL+GPSG GKST +  L RM +       +G I +DG NI    +
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEIDGINI--RDI 420

Query: 81  DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134
               LR R+  V Q    F  ++  N+        +G   A  ++++E++ K A      
Sbjct: 421 TFSSLRERISYVGQDVFLFSNTVRYNIL-------IGRPMATEEEMIEIA-KSANAHDFI 472

Query: 135 -SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
            SL       +  + S LSGGQ+QR+ IARA+  +  ++++DE  SALD      V + +
Sbjct: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532

Query: 194 HELRESLTIVIVTH 207
             L +  T +++ H
Sbjct: 533 SRLMQGRTTIVIAH 546


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)

Query: 25  INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
           +N  +    +  L+G SG GKST LR +  +         +G+++  GK I     D+  
Sbjct: 36  VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKIKDPPKDI-- 88

Query: 85  LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143
                 +VFQ    FP  ++ +NV  G +  G+   +     +  + L     F      
Sbjct: 89  -----SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH-- 141

Query: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE----ELIHELRES 199
                + +SGG  QRV  ARA  V P ++LMDEP SALD +   ++     +L  E R  
Sbjct: 142 ----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197

Query: 200 L-TIVIVTHSMQQAARVSQRAAMF--HMGHLVEE 230
           + ++++VTH++++A  +  R  +F  + G + EE
Sbjct: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 39/248 (15%)

Query: 12  VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70
           +SV Y     AL D+NL IP+N++TALIG +G GKST  + +             G I L
Sbjct: 17  ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPL 64

Query: 71  D--GKNIYQSSVDVVRLRARVGMVFQRPN---PFPKSIYDNVAYGPRIHGLGNNKADID- 124
           D    +I+  +V+       +  + Q  +    FP  + D V  G   H      A  + 
Sbjct: 65  DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124

Query: 125 -QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183
            +IV  +L+   + + ++ R   +   LS GQQ+RV +ARALA   +VI+MDEP +A+D 
Sbjct: 125 YRIVTEALENVGM-SSMRQRQIGE---LSIGQQKRVFLARALAQKSQVIIMDEPFAAID- 179

Query: 184 IATASVEELIHELR----ESLTIVIVTHSMQQAARVSQRAAMFH--------MGHLVEED 231
               +  E+I  L+    E + I++ TH++        R                +  ED
Sbjct: 180 --FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNED 237

Query: 232 DTDKMFTA 239
           +  K F A
Sbjct: 238 NIQKTFGA 245


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)

Query: 18  EKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76
            KR++  ++N  +      AL+G SG GK++    + R     D C  +G + ++G ++ 
Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY---DPC--SGSVEIEGIDLR 355

Query: 77  QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYG-PRIHGLGNNKADIDQIVEMSLKKAS 135
             S++   +R  +  V Q P     S+YDN+A G P  H       +   + +       
Sbjct: 356 LLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGC 411

Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195
           L N     L   A  LS GQ QR+ IARA+  +  ++L+DE  SALD      + +++ E
Sbjct: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471

Query: 196 LRESLTIVIVTHSM 209
            R   T +  +H +
Sbjct: 472 QRRGRTTIFASHRL 485


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)

Query: 22  LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81
           L +++L + +  + AL+ PSG GKST L     + E  D     G +I+  +   + S D
Sbjct: 26  LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-EVPDQ----GNVIIANQLCNKLSDD 80

Query: 82  VVR-LR-ARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138
               LR +++G V+Q        S+ +N+ +   I G+ +  A    +  +S    S + 
Sbjct: 81  KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140

Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196
             +      +S +SGG+QQRV I RA+A  P +IL DEP   LD      V  ++  L  
Sbjct: 141 NRR------SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194

Query: 197 RESLTIVIVTHSMQQAARVSQR 218
           R  L  +I TH+   A+++ ++
Sbjct: 195 RSGLAALIATHNHDLASQMDRQ 216


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 59.7 bits (143), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 36/234 (15%)

Query: 12  VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71
           +S  Y ++  + +++ K+P   +  +IGP+G GK+T  R L     T D    +G I + 
Sbjct: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSGTIHV- 376

Query: 72  GKNIYQSSVDVVR--LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
           G+ +  S VD  R  L A             K+++++++ G  I  L  ++ +       
Sbjct: 377 GETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEIN------- 417

Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
           S    S FN            LSGGQ+ RV +A+ L     VIL+DEP + LD    +++
Sbjct: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477

Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHL------VEEDDTDKM 236
           E+ +     +   VI++H      R++     F   GH+       EE + DK+
Sbjct: 478 EDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529



 Score = 49.7 bits (117), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 56/233 (24%)

Query: 4   IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63
           IY M    +S  +G K+ L DINL    ++   ++GP+G GKST LR +  +++      
Sbjct: 6   IYHMAG--LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE----- 58

Query: 64  FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD 122
           + GE  L                  VG + Q P     K++ +N+     I G+ + +A 
Sbjct: 59  YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100

Query: 123 IDQIVEMSLKKASLFNEVKDRL----------------------FH------DASLLSGG 154
           +D+  E+ +  +    E   +L                       H      + + LSGG
Sbjct: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160

Query: 155 QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTH 207
           +++RV + + L  +P+++L+DEP + LD    A +E+ + E   S  +++VTH
Sbjct: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTH 211


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 22/206 (10%)

Query: 24  DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83
           +++  IP+ S   + GPSGCGKS FL C+  +       +  G+         Q S D +
Sbjct: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD--------RQISRDFI 401

Query: 84  -RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL--GNNKADIDQIVE--MSLKKASLFN 138
            +  A++G + Q  + FP SI +N+      + L      A I    E  +SLK      
Sbjct: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461

Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
              D + ++         Q++ ++R +A NP ++LMDEP   LD  A  +   L+ + +E
Sbjct: 462 YCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514

Query: 199 S-LTIVIVTHSMQQAARVSQRAAMFH 223
           +  TIVI++H       +S  + +FH
Sbjct: 515 NKKTIVIISHD-PTIISMSDFSLIFH 539


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 57.4 bits (137), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 40/198 (20%)

Query: 20  RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79
           + L DIN  I  N +  LIGP+G GKST  +            + TG        I + +
Sbjct: 24  KILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LITG--------IIKPT 63

Query: 80  VDVVRLRAR--VGMVFQR---PNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134
           +  V+   +  VG V Q+    N  P S+   +        + +++ D+ QI++      
Sbjct: 64  IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQILDRVNLIG 118

Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
                +KD        LSGG+ QR  +A+AL   P ++++DEP   +D     S+ ELI 
Sbjct: 119 KYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170

Query: 195 ELRESL--TIVIVTHSMQ 210
            +R+S    I++++H++ 
Sbjct: 171 SVRQSTGCGILLISHNLH 188


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 51.2 bits (121), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 40/207 (19%)

Query: 9   SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68
           ++K++  Y ++  + D +L+I       ++GP+G GK+T L+ L    +   +C F    
Sbjct: 287 ADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--GKIKPDCGF---- 340

Query: 69  ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSI--YDNVAYGPRIHGLGNNKADIDQI 126
           I  G N+  +++D  R         +  +P  KS+  Y   + G  +   G ++      
Sbjct: 341 ITLGTNLKIATIDQKR---------EDIDP-DKSLASYLTGSSGDSLMVRGESR------ 384

Query: 127 VEMSLKKASLFNEVKDRLFHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCSA 180
                    +   +KD LFH          LSGG++ R  +AR LA     ++MDEP + 
Sbjct: 385 --------HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436

Query: 181 LDPIATASVEELIHELRESLTIVIVTH 207
           LD      +E  I +L+   TI+IV+H
Sbjct: 437 LDFETLDFLERTITQLQG--TILIVSH 461



 Score = 36.2 bits (82), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 31/198 (15%)

Query: 10  NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69
           + +S   G    L D+ L I       L+G +G GKST L+    + E     VF     
Sbjct: 9   DHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----- 63

Query: 70  LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129
                ++ SS        R+G + Q P+         +++   I    ++   I   +E 
Sbjct: 64  -----LHSSS--------RLGYLEQNPD---------LSHFSTISQYIDDT--IKDTIEA 99

Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189
                SL  +   R       LS GQ + V + + L   P+++++DEP + LD      +
Sbjct: 100 PYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159

Query: 190 EELIHELRESLTIVIVTH 207
           E+ + ++  +L  + V+H
Sbjct: 160 EQELLKINSAL--IFVSH 175


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 47.4 bits (111), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)

Query: 25  INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
           +NLK+  + V A++GP+G GKST    L+      D  +  G+I+  G++I   S+ V R
Sbjct: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK---DYEITAGDILYKGESILDWSI-VER 77

Query: 85  LRARVGMVFQRPNPFPKSI---YDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141
               + + FQ P   P  I   +  +A   +       +  I        K  +      
Sbjct: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137

Query: 142 DRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR-ES 199
           D L    +L  SGG+++   I +   + P + ++DE  S LD  A     + ++ LR + 
Sbjct: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197

Query: 200 LTIVIVTH 207
            + +I+TH
Sbjct: 198 RSFLIITH 205


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 35.8 bits (81), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 143 RLFHDASLLSGGQQQRVCIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRE- 198
           ++   A+ LSGG+ QRV +A+ L   A    + ++DEP + L     A +  ++H L + 
Sbjct: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897

Query: 199 SLTIVIVTHSMQ 210
             +I+++ H+++
Sbjct: 898 GNSIIVIEHNLE 909



 Score = 28.9 bits (63), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 17/61 (27%)

Query: 6   KMISNKVSVCYGEKRALFDIN------------LK-----IPQNSVTALIGPSGCGKSTF 48
           K +S K+S+   EKR  ++ N            LK     IP    TA+ G SG GKSTF
Sbjct: 607 KYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF 666

Query: 49  L 49
           L
Sbjct: 667 L 667



 Score = 26.9 bits (58), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTF 48
          +S+    +  L +I++++P+N +  + G SG GKS+ 
Sbjct: 7  ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 28.1 bits (61), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 39  GPSGCGKSTFLRCLNRM---NETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88
           G +G GK+T L CL R    +E I  C  T E+ L   +       VVRL  R
Sbjct: 257 GGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPH-------VVRLETR 302


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 27.3 bits (59), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 26  NLKIPQNSVTALIGPSGCGKSTFLRCLNRM 55
           N+++ ++++  L+GP+GCGK+   + L R+
Sbjct: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARI 136


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score = 26.9 bits (58), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 29  IPQNSVTALIGPSGCGKSTFLRCLNRMNET----IDNCVFTGEIILDGKNIYQSSVDVV 83
           +P+N +  L+GP+G GK+   R L R+       ++   FT EI   G+N+ Q   D+V
Sbjct: 52  MPKNIL--LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT-EIGYVGRNVEQIIRDLV 107


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 26.6 bits (57), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 152 SGGQQQRVCIARALA-VNPEVILMDEPCSALDP-----IATASVEELIHELRESLTIVI 204
           S GQQ    IA++LA    EVIL+  P S  DP     I     E+++ E+ ++L + I
Sbjct: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDI 273


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 26.2 bits (56), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 23  FDINLKIPQNSVTAL--IGPSGCGKSTFLRCLNRM 55
           F   L+ PQ  + +   +GP+G GK+  ++ L R+
Sbjct: 587 FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 554

 Score = 25.8 bits (55), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 12/106 (11%)

Query: 150 LLSGGQQQRVCIARALAVNPE----VILMDEPCSALDPIATASVEELIHELRESLTIVIV 205
           L SGG+  R  +A  + +  +     ++ DE  S +      ++   + +L + + ++ V
Sbjct: 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAV 486

Query: 206 THSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT-----APSDQRTQ 246
           TH+ Q AAR  +   ++      + DDT ++ T      P ++R +
Sbjct: 487 THAPQVAARADRHFLVYKTN---KPDDTQRIETYVAVLTPQERREE 529


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 25.8 bits (55), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 25  INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
           I LK+   +   +IG    GKSTFL  + R    I +  FT
Sbjct: 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFT 192


>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 920

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 37  LIGPSGCGKSTFLR 50
           L GP+  GKSTFLR
Sbjct: 655 LTGPNMGGKSTFLR 668


>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 805

 Score = 24.3 bits (51), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 144 LFHDASL---LSGGQQQRVCIARALAVNP-EVILMDEPCSALDPIATASVEELIHELRES 199
           L H  SL   L GG    +CIAR +   P +++ M+     L  I    +E+ +  L   
Sbjct: 373 LKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGI-DVPIEDSLRILERL 431

Query: 200 LTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
              VI  +   + +  S R  +     LVEE
Sbjct: 432 GFSVIGEYDKFEVSVPSWRQDVEEKADLVEE 462


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 24.3 bits (51), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 162 ARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIV--IVTHSMQQAARVSQRA 219
           A A+A+N +V      C   DP+   S+E +  E   SL ++     H M +A +     
Sbjct: 38  AVAVAINGKV------CDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPE 91

Query: 220 AMFHMGHLVEED---DTDKMFTAPSDQRTQ 246
               +G ++E+    D DK     SD+  Q
Sbjct: 92  VQVAIGPIIEDGFYYDFDKEQPFSSDELAQ 121


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 246

 Score = 23.9 bits (50), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 34 VTALIGPSGCGKS 46
          V  L+GPSG GKS
Sbjct: 66 VVILVGPSGSGKS 78


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score = 23.1 bits (48), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 4   IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKST 47
           + K++ +++    G++    D+N   P   V  L+G  G GK+T
Sbjct: 74  VIKIVHDELVEVLGKESIELDLN--APSPLVIMLVGLQGSGKTT 115


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 23.1 bits (48), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 116 LGNNKADIDQIVEMSLKKASLFNEVKDRLFH 146
           + N    ID ++E+ ++ AS+F  ++ R+  
Sbjct: 100 ISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 23.1 bits (48), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 40 PSGCGKSTFLRCLNRMNETIDNCVFTGEII-----LDGKNIY 76
          PSG GKST  R L + ++  +  +     +     +DGK+ Y
Sbjct: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYY 64


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,851
Number of Sequences: 1233
Number of extensions: 5657
Number of successful extensions: 81
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 43
length of query: 254
length of database: 328,796
effective HSP length: 72
effective length of query: 182
effective length of database: 240,020
effective search space: 43683640
effective search space used: 43683640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)