BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (254 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 530 bits (1364), Expect = e-152, Method: Compositional matrix adjust. Identities = 254/254 (100%), Positives = 254/254 (100%) Query: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID Sbjct: 1 MNQIYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETID 60 Query: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK Sbjct: 61 NCVFTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNK 120 Query: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA Sbjct: 121 ADIDQIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSA 180 Query: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP Sbjct: 181 LDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAP 240 Query: 241 SDQRTQDYIMGRFG 254 SDQRTQDYIMGRFG Sbjct: 241 SDQRTQDYIMGRFG 254 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 124 bits (312), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 15 CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74 YG AL DINL + + + GPSG GKST +RC+N + + GEII++G Sbjct: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ-----AGEIIINGIP 80 Query: 75 IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 + ++ +R VGMVFQ N F S+ +N GP I K D +++ L K Sbjct: 81 LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKKDAEELAMHYLNK 139 Query: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 ++ D+ +SLLSGG+ QR IAR+L + P+++L DEP SALDP V +++ Sbjct: 140 V----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195 Query: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 EL E +T+V VTH M A +V+ R G +VE++ ++ F P +RTQ ++ Sbjct: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 95.9 bits (237), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 24/245 (9%) Query: 16 YGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGK-- 73 YG A+ NL++ + + L+G SG GKST LR +N + V GE+++D Sbjct: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93 Query: 74 --NIYQSSVDVVR-LRAR-VGMVFQRPNPFP-KSIYDNVAYGPRIHGLGNNKADIDQIVE 128 N Y + +V+R LR V MVFQ+ P +++ NV G + + VE Sbjct: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD--------VE 145 Query: 129 MSLKKASLFNEVKDRLFHDA--SLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIAT 186 + A V + D ++LSGG +QRV ARA A ++LMDEP S+LDP+ Sbjct: 146 RKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 Query: 187 ASVEELIHELRESL--TIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQR 244 +++ + L+ L TIV V+H + +A R+ R A+ G +++ ++ P++ Sbjct: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 Query: 245 TQDYI 249 ++I Sbjct: 266 VSEFI 270 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 82.0 bits (201), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 24/230 (10%) Query: 15 CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74 CY + FD + + V ++GPSG GKST L + G I L+G+N Sbjct: 10 CYDNLKMQFDFQVNKAERIV--ILGPSGAGKSTLLSLMAGFKYPT-----RGSIFLNGQN 62 Query: 75 IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYG--PRIHGLGNNKADIDQIVEMSL 131 +SS + + ++FQ N F +++ N+A G P + A + Q++E Sbjct: 63 HTRSSPS----KRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVF 118 Query: 132 KKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEE 191 + FN S +SGGQ+QRV +AR L ++L+DEP + DP + Sbjct: 119 LE-DFFNRF-------PSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILG 170 Query: 192 LIHEL--RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTA 239 L+ ++ LT+++++H+++ + +++ R + G +V + D D++ Sbjct: 171 LLKQVCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNG 220 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 80.9 bits (198), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 32/212 (15%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 ++L + + L+GP+G GK+TF + + C +G I +DG +I + + + R Sbjct: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDI--TKMPMYR 96 Query: 85 LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRL 144 RAR+G+ + P SI+ + + +I ++E+ K +E D L Sbjct: 97 -RARLGISYL---PQEASIFRGLTV----------EENILAVLEVYEKDKKKRHEKLDSL 142 Query: 145 FHD----------ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 + A LLSGGQ++R+ IAR+L P IL+DEP + +DP+A + + LI Sbjct: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 Query: 195 EL-RESLTIVIVTHSMQQAARVSQRAAMFHMG 225 +L + I+I H++ + + RA + H G Sbjct: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAG 234 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 24/240 (10%) Query: 7 MISNKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 ++ N VS Y +F I+ +I + TALIG SG GKST + L R+ + + Sbjct: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-----IKG 411 Query: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125 G I +DG++I + + + LR +G++ Q F ++ N+ YG N DQ Sbjct: 412 GIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILYG--------NPNASDQ 461 Query: 126 IVEMSLKKASLFNEV------KDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPC 178 + +++ A L + + D + + L LSGG++QRV IARA+ NP +I+ DE Sbjct: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521 Query: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238 S+LD I ++ + L ++ T +++ H + + +F G +VE + + + Sbjct: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 75.9 bits (185), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 15/207 (7%) Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSVDVVRLRA 87 I + + +IG SG GKS +R + + + +GE+ + G+++ A Sbjct: 36 ILRGEILGVIGSSGTGKSILMRGILGLIPRV-----SGEVKVLGEHLNLAKGKQNFAFSA 90 Query: 88 RVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD-IDQIVEMSLKKASLFNEVKDRLF 145 ++G++FQ F ++ +N++ + H N AD I+ IV + L E + + Sbjct: 91 KLGVLFQHGALFSSMTVQENISMPIKEHL--NLPADLIEHIVHTKIAIVGLPPETANLMP 148 Query: 146 HDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES--LTIV 203 LSGG +RV +ARALA++P+++ +DEP S LDPIA ++L+ +LR S L++ Sbjct: 149 FQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 Query: 204 IVTHSMQQAARVSQRAAMFHMGHLVEE 230 ++TH + R A+ +++E Sbjct: 206 MITHDLNNLISTCNRVAVIQKKGIMKE 232 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 75.5 bits (184), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 22/194 (11%) Query: 21 ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSV 80 L INL +TAL+GPSG GKST + L RM + +G I +DG NI + Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDP-----SSGSIEIDGINI--RDI 420 Query: 81 DVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA------ 134 LR R+ V Q F ++ N+ +G A ++++E++ K A Sbjct: 421 TFSSLRERISYVGQDVFLFSNTVRYNIL-------IGRPMATEEEMIEIA-KSANAHDFI 472 Query: 135 -SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 SL + + S LSGGQ+QR+ IARA+ + ++++DE SALD V + + Sbjct: 473 MSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQAL 532 Query: 194 HELRESLTIVIVTH 207 L + T +++ H Sbjct: 533 SRLMQGRTTIVIAH 546 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 71.6 bits (174), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 +N + + L+G SG GKST LR + + +G+++ GK I D+ Sbjct: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKIKDPPKDI-- 88 Query: 85 LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143 +VFQ FP ++ +NV G + G+ + + + L F Sbjct: 89 -----SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH-- 141 Query: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE----ELIHELRES 199 + +SGG QRV ARA V P ++LMDEP SALD + ++ +L E R Sbjct: 142 ----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 Query: 200 L-TIVIVTHSMQQAARVSQRAAMF--HMGHLVEE 230 + ++++VTH++++A + R +F + G + EE Sbjct: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 39/248 (15%) Query: 12 VSVCYGEKR-ALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIIL 70 +SV Y AL D+NL IP+N++TALIG +G GKST + + G I L Sbjct: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPL 64 Query: 71 D--GKNIYQSSVDVVRLRARVGMVFQRPN---PFPKSIYDNVAYGPRIHGLGNNKADID- 124 D +I+ +V+ + + Q + FP + D V G H A + Sbjct: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124 Query: 125 -QIVEMSLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDP 183 +IV +L+ + + ++ R + LS GQQ+RV +ARALA +VI+MDEP +A+D Sbjct: 125 YRIVTEALENVGM-SSMRQRQIGE---LSIGQQKRVFLARALAQKSQVIIMDEPFAAID- 179 Query: 184 IATASVEELIHELR----ESLTIVIVTHSMQQAARVSQRAAMFH--------MGHLVEED 231 + E+I L+ E + I++ TH++ R + ED Sbjct: 180 --FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNED 237 Query: 232 DTDKMFTA 239 + K F A Sbjct: 238 NIQKTFGA 245 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 63.2 bits (152), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%) Query: 18 EKRALF-DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIY 76 KR++ ++N + AL+G SG GK++ + R D C +G + ++G ++ Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFY---DPC--SGSVEIEGIDLR 355 Query: 77 QSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYG-PRIHGLGNNKADIDQIVEMSLKKAS 135 S++ +R + V Q P S+YDN+A G P H + + + Sbjct: 356 LLSLE--EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGC 411 Query: 136 LFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHE 195 L N L A LS GQ QR+ IARA+ + ++L+DE SALD + +++ E Sbjct: 412 LENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE 471 Query: 196 LRESLTIVIVTHSM 209 R T + +H + Sbjct: 472 QRRGRTTIFASHRL 485 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 61.6 bits (148), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%) Query: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVD 81 L +++L + + + AL+ PSG GKST L + E D G +I+ + + S D Sbjct: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-EVPDQ----GNVIIANQLCNKLSDD 80 Query: 82 VVR-LR-ARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFN 138 LR +++G V+Q S+ +N+ + I G+ + A + +S S + Sbjct: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHEL-- 196 + +S +SGG+QQRV I RA+A P +IL DEP LD V ++ L Sbjct: 141 NRR------SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194 Query: 197 RESLTIVIVTHSMQQAARVSQR 218 R L +I TH+ A+++ ++ Sbjct: 195 RSGLAALIATHNHDLASQMDRQ 216 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 59.7 bits (143), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 36/234 (15%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 +S Y ++ + +++ K+P + +IGP+G GK+T R L T D +G I + Sbjct: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSGTIHV- 376 Query: 72 GKNIYQSSVDVVR--LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 G+ + S VD R L A K+++++++ G I L ++ + Sbjct: 377 GETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEIN------- 417 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 S S FN LSGGQ+ RV +A+ L VIL+DEP + LD +++ Sbjct: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 Query: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHL------VEEDDTDKM 236 E+ + + VI++H R++ F GH+ EE + DK+ Sbjct: 478 EDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529 Score = 49.7 bits (117), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 56/233 (24%) Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 IY M +S +G K+ L DINL ++ ++GP+G GKST LR + +++ Sbjct: 6 IYHMAG--LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE----- 58 Query: 64 FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD 122 + GE L VG + Q P K++ +N+ I G+ + +A Sbjct: 59 YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100 Query: 123 IDQIVEMSLKKASLFNEVKDRL----------------------FH------DASLLSGG 154 +D+ E+ + + E +L H + + LSGG Sbjct: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160 Query: 155 QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTH 207 +++RV + + L +P+++L+DEP + LD A +E+ + E S +++VTH Sbjct: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTH 211 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 57.8 bits (138), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 22/206 (10%) Query: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83 +++ IP+ S + GPSGCGKS FL C+ + + G+ Q S D + Sbjct: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD--------RQISRDFI 401 Query: 84 -RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL--GNNKADIDQIVE--MSLKKASLFN 138 + A++G + Q + FP SI +N+ + L A I E +SLK Sbjct: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461 Query: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198 D + ++ Q++ ++R +A NP ++LMDEP LD A + L+ + +E Sbjct: 462 YCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 Query: 199 S-LTIVIVTHSMQQAARVSQRAAMFH 223 + TIVI++H +S + +FH Sbjct: 515 NKKTIVIISHD-PTIISMSDFSLIFH 539 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 40/198 (20%) Query: 20 RALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSS 79 + L DIN I N + LIGP+G GKST + + TG I + + Sbjct: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LITG--------IIKPT 63 Query: 80 VDVVRLRAR--VGMVFQR---PNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKA 134 + V+ + VG V Q+ N P S+ + + +++ D+ QI++ Sbjct: 64 IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQILDRVNLIG 118 Query: 135 SLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194 +KD LSGG+ QR +A+AL P ++++DEP +D S+ ELI Sbjct: 119 KYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170 Query: 195 ELRESL--TIVIVTHSMQ 210 +R+S I++++H++ Sbjct: 171 SVRQSTGCGILLISHNLH 188 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 51.2 bits (121), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 40/207 (19%) Query: 9 SNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEI 68 ++K++ Y ++ + D +L+I ++GP+G GK+T L+ L + +C F Sbjct: 287 ADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT--GKIKPDCGF---- 340 Query: 69 ILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSI--YDNVAYGPRIHGLGNNKADIDQI 126 I G N+ +++D R + +P KS+ Y + G + G ++ Sbjct: 341 ITLGTNLKIATIDQKR---------EDIDP-DKSLASYLTGSSGDSLMVRGESR------ 384 Query: 127 VEMSLKKASLFNEVKDRLFHDASL------LSGGQQQRVCIARALAVNPEVILMDEPCSA 180 + +KD LFH LSGG++ R +AR LA ++MDEP + Sbjct: 385 --------HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436 Query: 181 LDPIATASVEELIHELRESLTIVIVTH 207 LD +E I +L+ TI+IV+H Sbjct: 437 LDFETLDFLERTITQLQG--TILIVSH 461 Score = 36.2 bits (82), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 31/198 (15%) Query: 10 NKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEII 69 + +S G L D+ L I L+G +G GKST L+ + E VF Sbjct: 9 DHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----- 63 Query: 70 LDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 ++ SS R+G + Q P+ +++ I ++ I +E Sbjct: 64 -----LHSSS--------RLGYLEQNPD---------LSHFSTISQYIDDT--IKDTIEA 99 Query: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 SL + R LS GQ + V + + L P+++++DEP + LD + Sbjct: 100 PYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159 Query: 190 EELIHELRESLTIVIVTH 207 E+ + ++ +L + V+H Sbjct: 160 EQELLKINSAL--IFVSH 175 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 47.4 bits (111), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 +NLK+ + V A++GP+G GKST L+ D + G+I+ G++I S+ V R Sbjct: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK---DYEITAGDILYKGESILDWSI-VER 77 Query: 85 LRARVGMVFQRPNPFPKSI---YDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141 + + FQ P P I + +A + + I K + Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137 Query: 142 DRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR-ES 199 D L +L SGG+++ I + + P + ++DE S LD A + ++ LR + Sbjct: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197 Query: 200 LTIVIVTH 207 + +I+TH Sbjct: 198 RSFLIITH 205 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 35.8 bits (81), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 143 RLFHDASLLSGGQQQRVCIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRE- 198 ++ A+ LSGG+ QRV +A+ L A + ++DEP + L A + ++H L + Sbjct: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897 Query: 199 SLTIVIVTHSMQ 210 +I+++ H+++ Sbjct: 898 GNSIIVIEHNLE 909 Score = 28.9 bits (63), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 17/61 (27%) Query: 6 KMISNKVSVCYGEKRALFDIN------------LK-----IPQNSVTALIGPSGCGKSTF 48 K +S K+S+ EKR ++ N LK IP TA+ G SG GKSTF Sbjct: 607 KYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF 666 Query: 49 L 49 L Sbjct: 667 L 667 Score = 26.9 bits (58), Expect = 0.30, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 23/37 (62%) Query: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTF 48 +S+ + L +I++++P+N + + G SG GKS+ Sbjct: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 28.1 bits (61), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%) Query: 39 GPSGCGKSTFLRCLNRM---NETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88 G +G GK+T L CL R +E I C T E+ L + VVRL R Sbjct: 257 GGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPH-------VVRLETR 302 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 27.3 bits (59), Expect = 0.27, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%) Query: 26 NLKIPQNSVTALIGPSGCGKSTFLRCLNRM 55 N+++ ++++ L+GP+GCGK+ + L R+ Sbjct: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARI 136 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 26.9 bits (58), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%) Query: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNET----IDNCVFTGEIILDGKNIYQSSVDVV 83 +P+N + L+GP+G GK+ R L R+ ++ FT EI G+N+ Q D+V Sbjct: 52 MPKNIL--LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT-EIGYVGRNVEQIIRDLV 107 >gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 405 Score = 26.6 bits (57), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Query: 152 SGGQQQRVCIARALA-VNPEVILMDEPCSALDP-----IATASVEELIHELRESLTIVI 204 S GQQ IA++LA EVIL+ P S DP I E+++ E+ ++L + I Sbjct: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDI 273 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 26.2 bits (56), Expect = 0.56, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Query: 23 FDINLKIPQNSVTAL--IGPSGCGKSTFLRCLNRM 55 F L+ PQ + + +GP+G GK+ ++ L R+ Sbjct: 587 FRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 25.8 bits (55), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 12/106 (11%) Query: 150 LLSGGQQQRVCIARALAVNPE----VILMDEPCSALDPIATASVEELIHELRESLTIVIV 205 L SGG+ R +A + + + ++ DE S + ++ + +L + + ++ V Sbjct: 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAV 486 Query: 206 THSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT-----APSDQRTQ 246 TH+ Q AAR + ++ + DDT ++ T P ++R + Sbjct: 487 THAPQVAARADRHFLVYKTN---KPDDTQRIETYVAVLTPQERREE 529 >gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62] Length = 335 Score = 25.8 bits (55), Expect = 0.78, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 20/41 (48%) Query: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65 I LK+ + +IG GKSTFL + R I + FT Sbjct: 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFT 192 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 10/14 (71%), Positives = 11/14 (78%) Query: 37 LIGPSGCGKSTFLR 50 L GP+ GKSTFLR Sbjct: 655 LTGPNMGGKSTFLR 668 >gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 144 LFHDASL---LSGGQQQRVCIARALAVNP-EVILMDEPCSALDPIATASVEELIHELRES 199 L H SL L GG +CIAR + P +++ M+ L I +E+ + L Sbjct: 373 LKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGI-DVPIEDSLRILERL 431 Query: 200 LTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230 VI + + + S R + LVEE Sbjct: 432 GFSVIGEYDKFEVSVPSWRQDVEEKADLVEE 462 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%) Query: 162 ARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIV--IVTHSMQQAARVSQRA 219 A A+A+N +V C DP+ S+E + E SL ++ H M +A + Sbjct: 38 AVAVAINGKV------CDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPE 91 Query: 220 AMFHMGHLVEED---DTDKMFTAPSDQRTQ 246 +G ++E+ D DK SD+ Q Sbjct: 92 VQVAIGPIIEDGFYYDFDKEQPFSSDELAQ 121 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 23.9 bits (50), Expect = 2.9, Method: Compositional matrix adjust. Identities = 9/13 (69%), Positives = 10/13 (76%) Query: 34 VTALIGPSGCGKS 46 V L+GPSG GKS Sbjct: 66 VVILVGPSGSGKS 78 >gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKST 47 + K++ +++ G++ D+N P V L+G G GK+T Sbjct: 74 VIKIVHDELVEVLGKESIELDLN--APSPLVIMLVGLQGSGKTT 115 >gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 23.1 bits (48), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/31 (25%), Positives = 18/31 (58%) Query: 116 LGNNKADIDQIVEMSLKKASLFNEVKDRLFH 146 + N ID ++E+ ++ AS+F ++ R+ Sbjct: 100 ISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 23.1 bits (48), Expect = 5.2, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 40 PSGCGKSTFLRCLNRMNETIDNCVFTGEII-----LDGKNIY 76 PSG GKST R L + ++ + + + +DGK+ Y Sbjct: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYY 64 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 149,851 Number of Sequences: 1233 Number of extensions: 5657 Number of successful extensions: 81 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 43 length of query: 254 length of database: 328,796 effective HSP length: 72 effective length of query: 182 effective length of database: 240,020 effective search space: 43683640 effective search space used: 43683640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)