HHsearch alignment for GI: 254780705 and conserved domain: COG4135
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.46 E-value=0.00013 Score=48.07 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=101.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 2026678-99999999999999999999999998643--7302456789899887653369999999999998626663-
Q gi|254780705|r 201 AGIGVAV-VGSLYMMLIVIGLSFPLGIASAIYLEEFS--HKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPR- 276 (425)
Q Consensus 201 ~Gi~~ai-~gTl~~~~ia~~ia~pigv~~aiyl~e~a--~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~- 276 (425)
T Consensus 340 ~~~~P~~l~n~~T~vllAl-sasslALll~iL~le~~~~~qR~~~~~~-l~LP~LlP~lslvfG~qvL~L~---~~l~~~ 414 (551)
T COG4135 340 INSLPEALINSLTMVLLAL-SASSLALLLLILWLEWGGIPQRRQAYLW-LWLPILLPALSLVFGQQVLALW---LGLDGS 414 (551)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHCCCCHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHH---HCCCCC
T ss_conf 8755999874565999997-2045999999999995798320110688-8888876677899889999999---626874
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00468975334543668999999998511067898998707721277778839753325899999999998767799999
Q gi|254780705|r 277 STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356 (425)
Q Consensus 277 ~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~ 356 (425)
T Consensus 415 w~~Vv--w~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~AVGfaVsiaqYlPTL~ 492 (551)
T COG4135 415 WTAVV--WGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFAVGFSVSIAQYLPTLW 492 (551)
T ss_pred HHHHH--HHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39999--9999999999999847457552708999998708306678887504576799999999876742997614782
Q ss_pred HHHHH
Q ss_conf 85432
Q gi|254780705|r 357 VGMVA 361 (425)
Q Consensus 357 ~~~~~ 361 (425)
T Consensus 493 lG~GR 497 (551)
T COG4135 493 LGAGR 497 (551)
T ss_pred CCCCC
T ss_conf 26776