HHsearch alignment for GI: 254780705 and conserved domain: COG4135
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=97.97 E-value=0.00073 Score=43.40 Aligned_cols=209 Identities=17% Similarity=0.252 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999999998---------
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLIN--------- 270 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~--------- 270 (425)
T Consensus 51 ~q~~~~alL~~l~stl~~tv~Alli~~---~~i~~fw~~P~w~R-i~~~ls~LLAiPHvAfA~-~~a~LfA~~G~L~RLl 125 (551)
T COG4135 51 PQHLPQALLATLVSTLIATVGALLIAL---LVIVAFWPGPKWQR-ICHRLSWLLAIPHVAFAT-SAALLFADGGFLLRLL 125 (551)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCHHHH-HHHHHHHHHHCCHHHHHH-HHHHHHCCCHHHHHHH
T ss_conf 642289999999999999999999999---99999648971999-986400887454899999-9999945840789884
Q ss_pred --HHCCCCC--------HH--HHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf --6266630--------04--6897533454366899999999851106-789899870772127777883975332589
Q gi|254780705|r 271 --FFKMPRS--------TA--LVGGLILALMTLPSIIIATGVALRTVPS-SIRSAALGLGASKVQTVFHHVLPLAMPAIL 337 (425)
Q Consensus 271 --~~~~~~~--------~~--l~g~~~l~~m~lP~i~~~~~~al~~vp~-~~~eaa~~LGas~~~~~~~v~lp~a~pgi~ 337 (425)
T Consensus 126 y~~f~~ft~p~d~~L~~Dpfaigl~~~La~KEvpFllli~la~L~ql~lt~~~~l~asLGYsr~q~~~w~l~P~~~r~ir 205 (551)
T COG4135 126 YDYFPYFTPPPDWLLPMDPFAIGLGATLAVKEVPFLLLILLAVLSQLALTQQVILLASLGYSRWQCLNWLLLPSVARAIR 205 (551)
T ss_pred CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEHHHHHHHHH
T ss_conf 14777778980213568814667788988841319999999987687899999999973666343202100387899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 9999999998767799999854321013665613445579999998603665006999999999999999999---9999
Q gi|254780705|r 338 TGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVI---NTAM 414 (425)
Q Consensus 338 ~g~il~~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~---n~~a 414 (425)
T Consensus 206 ~~~fAv~ays~SVV---------Dva--~iLGP~~P-PTl~V~vwQW~~~~Dl~~~~~aa~ga~lllllvvaalaa~vaL 273 (551)
T COG4135 206 MAMFAVVAYSLSVV---------DVA--IILGPGNP-PTLAVIVWQWLTQGDLDQQTKAALGALLLLLLVVAALAAYVAL 273 (551)
T ss_pred HHHHHHHHHHHHEE---------EEE--EEECCCCC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999864101---------577--87469989-9504775430478760035577788899999999999999999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999741049
Q gi|254780705|r 415 LWLRNRFKKRW 425 (425)
Q Consensus 415 ~~lr~r~~~~w 425 (425)
T Consensus 274 e~l~ka~~r~w 284 (551)
T COG4135 274 EYLLKAVWRRW 284 (551)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998