HHsearch alignment for GI: 254780705 and conserved domain: COG4209
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].
Probab=99.23 E-value=5e-09 Score=76.31 Aligned_cols=207 Identities=18% Similarity=0.126 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HC
Q ss_conf 66789999999999999999999999999864373024567898998876533699999999999986----------26
Q gi|254780705|r 204 GVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINF----------FK 273 (425)
Q Consensus 204 ~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~----------~~ 273 (425)
T Consensus 78 f~i~rNTl~~s~~~li~gf~~pI~lAillnElr-~~~~kk~~QT~~y~PhFlSWVVv~~~v~~fls~d~GiiN~ll~~~g 156 (309)
T COG4209 78 FIILRNTLLYSVLFLILGFPVPIILAILLNELR-NKVFKKVVQTISYLPHFLSWVVVSGFVFAFLSIDGGIINQLLMSLG 156 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 999999999999999995379999999999998-7778888766333000210030565788763667518999999828
Q ss_pred -C-------CCCHHHHHHHHHH-H-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -6-------6300468975334-5-4366899999999851106789899870772127777883975332589999999
Q gi|254780705|r 274 -M-------PRSTALVGGLILA-L-MTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVS 343 (425)
Q Consensus 274 -~-------~~~~~l~g~~~l~-~-m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~ 343 (425)
T Consensus 157 ~~pi~fl~~~~wf~~--i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllIL~ 234 (309)
T COG4209 157 GDPINFLTNPDWFRP--IIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLILN 234 (309)
T ss_pred CCCEEHHCCCCCHHH--HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 983102158860267--887898884236788999999972799999999805488778888211032314999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999876779999985432101366561-3445579999998603665006999999999999999999999999999741
Q gi|254780705|r 344 LARALGETAPLLFVGMVAFVTDYPVGV-TDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFK 422 (425)
Q Consensus 344 ~~ra~GEta~ll~~~~~~~~~~~p~~~-~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~ 422 (425)
T Consensus 235 iG~i~~~--------gFe~~yll~~~~~~~v~~vldtYVy~~gl--~~Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~~ 304 (309)
T COG4209 235 IGNIFNA--------GFELFYLLPNPSGYDVTEVLDTYVYRGGL--VTGDYSYSTAAGLFQSVVGFILLFLANRIAKRFD 304 (309)
T ss_pred HHHHHHC--------CHHHEEEECCCCCCCHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5237653--------72560660576687489899999998101--3575118999999999999999999999999706
Q ss_pred C
Q ss_conf 0
Q gi|254780705|r 423 K 423 (425)
Q Consensus 423 ~ 423 (425)
T Consensus 305 ~ 305 (309)
T COG4209 305 N 305 (309)
T ss_pred C
T ss_conf 2