HHsearch alignment for GI: 254780705 and conserved domain: COG4590
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=99.97 E-value=7.3e-32 Score=221.78 Aligned_cols=223 Identities=26% Similarity=0.401 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HH---------
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999-9--99---------
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILG-S--AV--------- 267 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~g-l--~~--------- 267 (425)
T Consensus 425 KfSL~Pi~FGTLKAA~yAMlfA~PlAvagAiYTAYFM~p~-mRRvVKPtIElMeAlPTViiGf~AGlwlAP~vE~hLpgv 503 (733)
T COG4590 425 KFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMTPS-MRRVVKPTIELMEALPTVIIGFLAGLWLAPFVESHLPGV 503 (733)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3234000044689999999998589999899999953775-641100089997533188999988776667776433699
Q ss_pred -------------------------------------HHHH-------------------HC-------------CCCCH
Q ss_conf -------------------------------------9986-------------------26-------------66300
Q gi|254780705|r 268 -------------------------------------LINF-------------------FK-------------MPRST 278 (425)
Q Consensus 268 -------------------------------------~~~~-------------------~~-------------~~~~~ 278 (425)
T Consensus 504 l~L~lLlpl~ill~G~~wsRLp~~~~~~lPaGW~a~iLiPV~l~~galaLwlsp~Le~~~fggdlr~wL~~d~~~YDQRN 583 (733)
T COG4590 504 LALMLLLPLSILLLGFIWSRLPKAWLRRLPAGWHALILIPVLLGIGALALWLSPELENALFGGDLRVWLAQDGIGYDQRN 583 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHCCCCCCCCCC
T ss_conf 99999867899999777764508773569876234688899999879998717476666726637768652477723244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46897533454366899999999851106789899870772127777883975332589999999999876779999985
Q gi|254780705|r 279 ALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 (425)
Q Consensus 279 ~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~ 358 (425)
T Consensus 584 ALvVG~AMGFAvIP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMAT 663 (733)
T COG4590 584 ALVVGFAMGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMAT 663 (733)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 42334200022220345342244324785446673013687145401457504684188999975111106258999723
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 432101366561344557999999860366500--6999999999999999999999999999741049
Q gi|254780705|r 359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERP--FVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425 (425)
Q Consensus 359 ~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~--~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~w 425 (425)
T Consensus 664 GNtP~--~~~nIFeGmRtlaAniAvEmPEseVgs~HyRvLFL~ALvLltFTF~vNtLAE~vRqRLRekY 730 (733)
T COG4590 664 GNTPL--LDWNIFEGMRTLAANIAVEMPESEVGSAHYRVLFLAALVLLTFTFAVNTLAEWVRQRLREKY 730 (733)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89852--12228777888765521217654406633426899999999999999899999999999886