HHsearch alignment for GI: 254780705 and conserved domain: PRK10352
>PRK10352 nickel transporter permease NikB; Provisional.
Probab=99.42 E-value=5e-10 Score=82.64 Aligned_cols=217 Identities=14% Similarity=0.066 Sum_probs=159.4
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23213443211012026678999999999999999999999999986437302456789899887653369999999999
Q gi|254780705|r 188 GFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAV 267 (425)
Q Consensus 188 ~f~t~~~s~~~e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~ 267 (425)
T Consensus 79 D~G~S~~~~~pV~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~-~~~~~D~~~~~~~~~~~siP~F~la~lli~~ 157 (314)
T PRK10352 79 DFGISFATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARH-RDRLPDFAVRFIAFLGVSMPNFWLAFLLVMA 157 (314)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 578766368860898887637889999999999999985999998720-7972101310589987873199999999999
Q ss_pred HHHHHCCC---CC----HHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99862666---30----0468975334543668999999998-5110678989987077212777788397533258999
Q gi|254780705|r 268 LINFFKMP---RS----TALVGGLILALMTLPSIIIATGVAL-RTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTG 339 (425)
Q Consensus 268 ~~~~~~~~---~~----~~l~g~~~l~~m~lP~i~~~~~~al-~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g 339 (425)
T Consensus 158 fa~~l~~~P~~g~~~~~~liLP~l~l~l~~~a~~~r~~R~~~~e~l~~dyv~~ArakGls~~~i~~rh~lrnal~P~it~ 237 (314)
T PRK10352 158 FSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLSDRQVERRHILRNASLPMITA 237 (314)
T ss_pred HHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 99964767876778336541119999999999999999999999863299999998698931360865287429889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998767799999854321013665613445579999998603665006999999999999999999999999999
Q gi|254780705|r 340 STVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRN 419 (425)
Q Consensus 340 ~il~~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~ 419 (425)
T Consensus 238 ~~~~~~~ll~GavivE~------iF~~pG--------lG~ll~~Ai~~r---D~p~v~g~~l~~~~~~v~~nli~Dily~ 300 (314)
T PRK10352 238 VGMHIGELIGGTMIIEN------IFAWPG--------VGRYAVSAIFNR---DYPVIQCFTLMMVVVFVVCNLIVDLLNA 300 (314)
T ss_pred HHHHHHHHHCCHHHEEH------HHCCCC--------HHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998477610018------754767--------599999999813---8899999999999999999999999999
Q ss_pred HHH
Q ss_conf 741
Q gi|254780705|r 420 RFK 422 (425)
Q Consensus 420 r~~ 422 (425)
T Consensus 301 ~lD 303 (314)
T PRK10352 301 ALD 303 (314)
T ss_pred HCC
T ss_conf 648