HHsearch alignment for GI: 254780705 and conserved domain: PRK10592
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional.
Probab=99.96 E-value=3.3e-26 Score=185.80 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCC-
Q ss_conf 20266789999999999999999999999999864373024567898998876533699999999999986---26663-
Q gi|254780705|r 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINF---FKMPR- 276 (425)
Q Consensus 201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~---~~~~~- 276 (425)
T Consensus 59 ~~~~~a~~~Sl~ia~~~t~i~~~lG~~~A~~l~r~~-~~~g~~~~~~l~~~Pl~vP~iv~gl~l~~~f~~~g~~~g~~~~ 137 (281)
T PRK10592 59 DAMMSAVGLSLTIAACAATMAAILGTIAAVVMVRFG-RFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALGHAIGWPAD 137 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 789999999999999999999999999999999805-5330699999999899867899999999999984632253200
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00468975334543668999999998511067898998707721277778839753325899999999998767799999
Q gi|254780705|r 277 STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLF 356 (425)
Q Consensus 277 ~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~ 356 (425)
T Consensus 138 ~~~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~~ 217 (281)
T PRK10592 138 RGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASF 217 (281)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23789999999999999999999999858927999998819998888343541711598999999999999987778862
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 85432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r 357 VGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425)
Q Consensus 357 ~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425)
T Consensus 218 l~g~~------------~~TLpv~iy~~~~~~~~p~---~~A~~~l~~~v~~~~~~ia~~l~~R~~k~ 270 (281)
T PRK10592 218 VSGPG------------ATTLPMLVFSSVRMGVNPE---INALATLILGVVGIVGFIAWYLMARAEKQ 270 (281)
T ss_pred EECCC------------CCCHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10899------------8456999999987179879---99999999999999999999999888988