HHsearch alignment for GI: 254780705 and conserved domain: TIGR01097
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.81 E-value=8.1e-07 Score=62.21 Aligned_cols=181 Identities=17% Similarity=0.240 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999864373024567898998876533699999999999986266630046897533454
Q gi|254780705|r 210 SLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALM 289 (425)
Q Consensus 210 Tl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~~l~g~~~l~~m 289 (425)
T Consensus 12 A~~~T~~~V~l~~~l~ll~A~NL---~Pn~W~~~~VRRLM~~~RA~~E~V~A~l----F~~~~~L---GP~~~~~A~~IH 81 (192)
T TIGR01097 12 AVFSTILAVVLSIILGLLAAKNL---VPNPWVRQIVRRLMDILRAINEVVIAGL----FLVILSL---GPIAAVLALFIH 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHC---CCHHHHHHHHHH
T ss_conf 99999999999999999867525---8884210478999999977679999999----9999950---518999999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 36689999999985110678989987077212777788397533258999999999987677999998543210136656
Q gi|254780705|r 290 TLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVG 369 (425)
Q Consensus 290 ~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~~~~~~~~~p~~ 369 (425)
T Consensus 82 T~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVlP~l~SY~L~RlE~NVR~~T~~G~VG~GG----I--- 154 (192)
T TIGR01097 82 TIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVLPLLISYFLLRLEINVRAATVVGAVGAGG----I--- 154 (192)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----H---
T ss_conf 998999999999861589897665233303788999601026768899999999988655556530447872----7---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1344557999999860366500699999999999999999999999999
Q gi|254780705|r 370 VTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLR 418 (425)
Q Consensus 370 ~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr 418 (425)
T Consensus 155 ----G~~L~~~I~-------~~~~~~T~A~~~L~~~T~~~~D~lS~~LR 192 (192)
T TIGR01097 155 ----GVLLRLAIR-------QFQEAKTLALVLLLIVTVFLLDFLSARLR 192 (192)
T ss_pred ----HHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----689999860-------33068899999999999999999877409