HHsearch alignment for GI: 254780705 and conserved domain: TIGR03226
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.93 E-value=4.6e-24 Score=172.10 Aligned_cols=209 Identities=18% Similarity=0.124 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_conf 12026678999999999999999999999999986437302456789899887653369999999999998---------
Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLIN--------- 270 (425)
Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~--------- 270 (425)
T Consensus 87 ~~~~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~--f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~~~~G~ln~~L~ 164 (312)
T TIGR03226 87 SHDFRDALGNTLQIAFAAAAGALLLGSALAAILFFIP--FPGAELIGRFLDLFIAFPSFLIAFAFIFIYGSAGLLNGALM 164 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9679999999999999999999999999999999623--76289999999999998899999999999835770779999
Q ss_pred -HHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -626663------0046897533454366899999999851106789899870772127777883975332589999999
Q gi|254780705|r 271 -FFKMPR------STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVS 343 (425)
Q Consensus 271 -~~~~~~------~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~ 343 (425)
T Consensus 165 ~l~gl~~~p~~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~lL~ 244 (312)
T TIGR03226 165 RAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILC 244 (312)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96286677457774099999999999899999999999996897899999884999888678742784689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99987677999998543210136656134455799999986036650069999999999999999999999999997410
Q gi|254780705|r 344 LARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKK 423 (425)
Q Consensus 344 ~~ra~GEta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~ 423 (425)
T Consensus 245 Fi~~~~~F~~~~~lgg~~------------~~tl~~~Iy~~~~~~--~d~~~AaAlavillv~~l~l~~l~r~~~rR~~~ 310 (312)
T TIGR03226 245 FLLTLNEFGILLFIGAAG------------LITLPMAIYSKAILD--IDLPAAAAGALIMIALSLALFALYRLAARRAGE 310 (312)
T ss_pred HHHHHHHHCCEEEEECCC------------CEEHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999997754113440899------------701799999999875--798999999999999999999999999876348
Q ss_pred C
Q ss_conf 4
Q gi|254780705|r 424 R 424 (425)
Q Consensus 424 ~ 424 (425)
T Consensus 311 ~ 311 (312)
T TIGR03226 311 G 311 (312)
T ss_pred C
T ss_conf 9