HHsearch alignment for GI: 254780705 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.83 E-value=2.1e-18 Score=136.10 Aligned_cols=151 Identities=21% Similarity=0.348 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 01202667899999999999999999999999998643730245678989988765336999999999999862666300
Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRST 278 (425)
Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~~~~ 278 (425)
T Consensus 80 ~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~---s~~~~~~l~pild~mQTiP~fvyL----ip~i~lfGi---G 149 (267)
T TIGR03416 80 INQGYWEETVETLALVLSATVVCMVIGVPLGIAAAH---RPWLYAIMRPVLDLMQTLPTFVYL----IPALVLFGL---G 149 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHCC---C
T ss_conf 987158999999999999999999999999999981---699999999999874315467999----999999488---7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46897533454366899999999851106789899870772127777883975332589999999999876779999985
Q gi|254780705|r 279 ALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 (425)
Q Consensus 279 ~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta~ll~~~ 358 (425)
T Consensus 150 ~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IG 229 (267)
T TIGR03416 150 MVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVG 229 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 05699999999988999999999985676899999983998988979941841589999999999999999999999967
Q ss_pred H
Q ss_conf 4
Q gi|254780705|r 359 M 359 (425)
Q Consensus 359 ~ 359 (425)
T Consensus 230 a 230 (267)
T TIGR03416 230 A 230 (267)
T ss_pred C
T ss_conf 8