RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} (A:)
Length = 217
Score = 71.5 bits (175), Expect = 2e-13
Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 19/226 (8%)
Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258
V G+ + + + P+G+ + + V A +N S+P I
Sbjct: 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69
Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
+ + + L + P I AL +P+ + A+ +GA
Sbjct: 70 ILLVWMIPFTRVIVGTS-IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128
Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378
+ +Q V +LP A+P ++ +T++L +G +A VG
Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ-------------- 174
Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
Y + V ++LL+I + +I A + ++
Sbjct: 175 -IGYQYGYIGYNATV--MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
>2r6g_G Maltose transport system permease protein MALG; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (G:73-244)
Length = 172
Score = 71.1 bits (174), Expect = 2e-13
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 5/161 (3%)
Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKG---FFSSFVQANINNLASVPS 257
+ + + S+ + I L A G + +
Sbjct: 7 FPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLV 66
Query: 258 IVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317
+Y + F + V + L + + T+ SS+ AA G
Sbjct: 67 ALYALFDRLGEYIPFIGLNTHGGV--IFAYLGGIALHVWTIKGYFETIDSSLEEAAALDG 124
Query: 318 ASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
A+ Q +LPL++P + +S A+ E +
Sbjct: 125 ATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL 165
>2onk_C Molybdate/tungstate ABC transporter, permease protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(C:69-249)
Length = 181
Score = 70.0 bits (171), Expect = 6e-13
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 9/164 (5%)
Query: 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYG 261
+ V+ + Y LI ++ G A L S G S V+ ++ +P V G
Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPG--KSVVEGIVDLPVVIPHTVAG 58
Query: 262 ILGSAVLINFFKMPR-------STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAAL 314
I V + + + + +++P I +V + A
Sbjct: 59 IALLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVAR 118
Query: 315 GLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
LG+S ++ F LPL++ I+ G+ +S AR + E ++ +
Sbjct: 119 TLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA 162
>2r6g_F Maltose transport system permease protein MALF; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (F:269-326,F:360-453)
Length = 152
Score = 60.6 bits (147), Expect = 3e-10
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265
V ++ LI + L+ +G+ A ++ + +G + + + + +
Sbjct: 12 IFVWTVVFSLITVFLTVAVGMVLACLVQWEALRG--KAVYRVLLILPYAAWFSDPTTART 69
Query: 266 AVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVF 325
++I + + P ++I L+ +P + A+ GA Q F
Sbjct: 70 MLII---------------VNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFF 114
Query: 326 HHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
LPL + + S A + +
Sbjct: 115 KITLPLLIKPLTPLMIASFAFNFNNFVLIQLLT 147
>3d31_C Sulfate/molybdate ABC transporter, permease protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (C:)
Length = 295
Score = 59.0 bits (142), Expect = 1e-09
Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVY 260
+ ++ SLY + L+ LG + L F G ++ + VP V
Sbjct: 78 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVV--VPHTVA 135
Query: 261 GILGSAVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRS 311
GI V + + + + +++P + + ++V + +
Sbjct: 136 GIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLEN 195
Query: 312 AALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVT 371
AA LGA + F LPL+ +L GS ++ ARA+ E ++ + V
Sbjct: 196 AARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------- 248
Query: 372 DIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
P IY +LL++ I + L +
Sbjct: 249 ------PTLIYDRFISYGLSAS---RPIAVLLILVTLSIFLVIRTLSAGWSIY 292
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide;
HET: NAG; 2.60A {Mus musculus} (B:1-115)
Length = 115
Score = 26.7 bits (59), Expect = 5.5
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 202 GIGVAVVGSLYMMLIVIGLSFPLGIASA-IYLEEFSHKGFFSSFVQ 246
GI AV + + S S ++ +F + ++++ Q
Sbjct: 2 GISQAVHAAHAEINEAGRGSGSGSGNSERHFVVQFKGECYYTNGTQ 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 26.7 bits (58), Expect = 5.5
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 320 KVQTVFHHVLPLAMPAILTGSTVSL-ARAL---GETAPLLFVGMVAFVTDYPVGVTDIAT 375
K+Q A+P +L+ ++ ++ G+TA M++ V I
Sbjct: 144 KIQE-------KALPLLLSNPPRNMIGQSQSGTGKTAAFAL-TMLSRVDASVPKPQAICL 195
Query: 376 AFP----VQIYLWA 385
A QI
Sbjct: 196 APSRELARQIMDVV 209
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.139 0.407
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,063,825
Number of extensions: 131812
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 24
Length of query: 425
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 334
Effective length of database: 1,879,794
Effective search space: 627851196
Effective search space used: 627851196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)