RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] (425 letters) >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Length = 217 Score = 71.5 bits (175), Expect = 2e-13 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 19/226 (8%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258 V G+ + + + P+G+ + + V A +N S+P I Sbjct: 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + + L + P I AL +P+ + A+ +GA Sbjct: 70 ILLVWMIPFTRVIVGTS-IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378 + +Q V +LP A+P ++ +T++L +G +A VG Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ-------------- 174 Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 Y + V ++LL+I + +I A + ++ Sbjct: 175 -IGYQYGYIGYNATV--MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 >2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244) Length = 172 Score = 71.1 bits (174), Expect = 2e-13 Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 5/161 (3%) Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKG---FFSSFVQANINNLASVPS 257 + + + S+ + I L A G + + Sbjct: 7 FPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLV 66 Query: 258 IVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLG 317 +Y + F + V + L + + T+ SS+ AA G Sbjct: 67 ALYALFDRLGEYIPFIGLNTHGGV--IFAYLGGIALHVWTIKGYFETIDSSLEEAAALDG 124 Query: 318 ASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 A+ Q +LPL++P + +S A+ E + Sbjct: 125 ATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL 165 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249) Length = 181 Score = 70.0 bits (171), Expect = 6e-13 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 9/164 (5%) Query: 202 GIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYG 261 + V+ + Y LI ++ G A L S G S V+ ++ +P V G Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPG--KSVVEGIVDLPVVIPHTVAG 58 Query: 262 ILGSAVLINFFKMPR-------STALVGGLILALMTLPSIIIATGVALRTVPSSIRSAAL 314 I V + + + + +++P I +V + A Sbjct: 59 IALLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVAR 118 Query: 315 GLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 LG+S ++ F LPL++ I+ G+ +S AR + E ++ + Sbjct: 119 TLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA 162 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453) Length = 152 Score = 60.6 bits (147), Expect = 3e-10 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 17/153 (11%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265 V ++ LI + L+ +G+ A ++ + +G + + + + + Sbjct: 12 IFVWTVVFSLITVFLTVAVGMVLACLVQWEALRG--KAVYRVLLILPYAAWFSDPTTART 69 Query: 266 AVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVF 325 ++I + + P ++I L+ +P + A+ GA Q F Sbjct: 70 MLII---------------VNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFF 114 Query: 326 HHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 LPL + + S A + + Sbjct: 115 KITLPLLIKPLTPLMIASFAFNFNNFVLIQLLT 147 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Length = 295 Score = 59.0 bits (142), Expect = 1e-09 Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 27/233 (11%) Query: 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVY 260 + ++ SLY + L+ LG + L F G ++ + VP V Sbjct: 78 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVV--VPHTVA 135 Query: 261 GILGSAVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRS 311 GI V + + + + +++P + + ++V + + Sbjct: 136 GIALLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLEN 195 Query: 312 AALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVT 371 AA LGA + F LPL+ +L GS ++ ARA+ E ++ + V Sbjct: 196 AARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------- 248 Query: 372 DIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 P IY +LL++ I + L + Sbjct: 249 ------PTLIYDRFISYGLSAS---RPIAVLLILVTLSIFLVIRTLSAGWSIY 292 >1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET: NAG; 2.60A {Mus musculus} (B:1-115) Length = 115 Score = 26.7 bits (59), Expect = 5.5 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 202 GIGVAVVGSLYMMLIVIGLSFPLGIASA-IYLEEFSHKGFFSSFVQ 246 GI AV + + S S ++ +F + ++++ Q Sbjct: 2 GISQAVHAAHAEINEAGRGSGSGSGNSERHFVVQFKGECYYTNGTQ 47 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 26.7 bits (58), Expect = 5.5 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%) Query: 320 KVQTVFHHVLPLAMPAILTGSTVSL-ARAL---GETAPLLFVGMVAFVTDYPVGVTDIAT 375 K+Q A+P +L+ ++ ++ G+TA M++ V I Sbjct: 144 KIQE-------KALPLLLSNPPRNMIGQSQSGTGKTAAFAL-TMLSRVDASVPKPQAICL 195 Query: 376 AFP----VQIYLWA 385 A QI Sbjct: 196 APSRELARQIMDVV 209 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.139 0.407 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,063,825 Number of extensions: 131812 Number of successful extensions: 411 Number of sequences better than 10.0: 1 Number of HSP's gapped: 407 Number of HSP's successfully gapped: 24 Length of query: 425 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 334 Effective length of database: 1,879,794 Effective search space: 627851196 Effective search space used: 627851196 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 56 (25.6 bits)