RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] (425 letters) >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Score = 66.2 bits (161), Expect = 2e-11 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265 ++ SLY + L+ LG + L F G V++ I+ VP V GI Sbjct: 83 SIFLSLYAGFLATLLALLLGAPTGYILARFDFPG--KRLVESIIDVPVVVPHTVAGIALL 140 Query: 266 AVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRSAALGL 316 V + + + + +++P + + ++V + +AA L Sbjct: 141 TVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSL 200 Query: 317 GASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATA 376 GA + F LPL+ +L GS ++ ARA+ E ++ + V Sbjct: 201 GAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------------ 248 Query: 377 FPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425 P IY F+ A + + L ++ ++ + W Sbjct: 249 -PTLIYDR-------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGW 289 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 61.1 bits (148), Expect = 5e-10 Identities = 83/493 (16%), Positives = 148/493 (30%), Gaps = 184/493 (37%) Query: 18 EWLFRFYCVVAVLV------VFV-FLILLLSSIVSKGIGALWQTHI-----SLPIEFSET 65 E + +F V+ LV F L L L+ + L I L E Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGNDIHALAAKLLQE--ND 113 Query: 66 IVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQAS----QMLS------ 115 + K L++ R R SN AL R Q+++ Sbjct: 114 TTLVKTKE------LIKNYIT--ARIMAKRPFDKK-SNSALFRAVGEGNAQLVAIFGGQG 164 Query: 116 TTARY--HLRKTLMTDPSLIGKTVEVS--LLA--SANIDSALKGYLYSPANVHRMSDYQW 169 T Y LR T L+G ++ S L+ A K +++ ++ +W Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFT----QGLNILEW 218 Query: 170 KWFQKLDSDGALFLDFNYGFFINGASSRPEV-----AGIGVAVVG--SL--YMML-IVIG 219 + S+ P+ I ++G L Y++ ++G Sbjct: 219 ---------------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257 Query: 220 LSFP------L--------GIASAIYL------EEF---SHKG----FF----------- 241 + P L G+ +A+ + E F K FF Sbjct: 258 FT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316 Query: 242 ----SSFVQANINNLASVPSIVYGI--LGSAVLINFFK-----MPRSTALVGGLILALMT 290 S ++ ++ N VPS + I L + ++ +P + ++L+ Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE----ISLVN 372 Query: 291 LPSIIIATG--VALRTVPSSIRS--AALGLGASKV-----QTVFHHV-LPLAMP------ 334 ++ +G +L + ++R A GL S++ + F + LP+A P Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432 Query: 335 -----AI---LTGSTVSLA-----------------RALGET-APLLFVGMVAFVTDYPV 368 I L + VS R L + + + V + PV Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI----VDCIIRLPV 488 Query: 369 GVTD--IATAFPV 379 T F Sbjct: 489 ---KWETTTQFKA 498 Score = 30.7 bits (69), Expect = 0.59 Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 73/216 (33%) Query: 122 LRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKL---DSD 178 R ++ SL E LL + A+ + F K+ ++ Sbjct: 6 TRPLTLSHGSL-----EHVLLVPTA--------SFFIASQLQEQ------FNKILPEPTE 46 Query: 179 GALFLDFNYGFFINGASSRPEVAG--IGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS 236 G D + ++ E+ G +G Y V L P + + Sbjct: 47 G-FAAD-------DEPTTPAELVGKFLG-------Y----VSSLVEPSKVGQFDQVLNLC 87 Query: 237 HKGFFSSFVQAN-INNL-ASVPSIVYGILGSA--VLINFFKMPRSTALVGGLILALMTLP 292 F + +++ N I+ L A + L ++ N+ Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT------------------- 128 Query: 293 SIIIATGVALRTVPSSIRSA---ALGLGASKVQTVF 325 A +A R SA A+G G +++ +F Sbjct: 129 ----ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160 >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Score = 53.2 bits (127), Expect = 1e-07 Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 19/226 (8%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258 V G+ + + + P+G+ + + V A +N S+P I Sbjct: 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + + L + P I AL +P+ + A+ +GA Sbjct: 70 ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378 + +Q V +LP A+P ++ +T++L +G +A VG G+ I + Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA--------GGLGQIGYQYG 180 Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 Y ++LL+I + +I A + ++ Sbjct: 181 YIGYNATV---------MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 Score = 48.6 bits (115), Expect = 2e-06 Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 3/253 (1%) Query: 169 WKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIAS 228 WK F ++ +D + F F + VG + L+ + Sbjct: 261 WKNFTRVFTDEGIQKPFLAIFVWTVV--FSLITVFLTVAVGMVLACLVQWEALRGKAVYR 318 Query: 229 AIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILAL 288 + + ++ F S + + N + + V +F P + + ++ Sbjct: 319 VLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTW 378 Query: 289 MTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARAL 348 + P ++I L+ +P + A+ GA Q F LPL + + S A Sbjct: 379 LGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNF 438 Query: 349 GETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAI-LLLLIFL 407 + + Y A + AI L+ + + Sbjct: 439 NNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLV 498 Query: 408 AVINTAMLWLRNR 420 + L Sbjct: 499 GALAIVNLKATRM 511 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.68 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 8/30 (26%) Query: 90 RKALARKLSIS------DSNHALLRQASQM 113 ++AL +KL S DS AL +A+ M Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKAT-M 46 Score = 29.2 bits (64), Expect = 1.8 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 6/25 (24%) Query: 301 ALRTVPSSIR-----SA-ALGLGAS 319 AL+ + +S++ SA AL + A+ Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10 Length = 341 Score = 28.3 bits (62), Expect = 3.8 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 15/141 (10%) Query: 90 RKALARKLSISDSNHALLRQASQMLSTTARYHLRKTL---MTDPSLIGKTVEVSLLASAN 146 R LA+ +++ +S H + S L + TL +T GK+ + Sbjct: 21 RATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 Query: 147 IDSALKGYL------------YSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGA 194 I LK + + RM+D + + Sbjct: 81 IREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRAREL 140 Query: 195 SSRPEVAGIGVAVVGSLYMML 215 E AG V +V ++ + Sbjct: 141 MLLCEAAGYDVVIVETVGVGQ 161 >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} Length = 511 Score = 27.3 bits (59), Expect = 6.0 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 6/86 (6%) Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVG 369 A + T +L L ++++L +A+ + V +T V Sbjct: 94 LLKPSMESAGEENTTVVSLLGLVPSTDAVRTSIALLQAVSDIGVPA--ARVWALTRRAVA 151 Query: 370 VTDIATAFPVQIYLW----AADAERP 391 V T LW A E P Sbjct: 152 VVPGETPQDAGAQLWGFGRVAALELP 177 >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* Length = 566 Score = 27.5 bits (61), Expect = 6.5 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFP-LGIASAIYLEEFSHKGFFSSFVQANINNLASVPSI 258 G V ++ + + + + L P + A +LE KGFF S + + N + Sbjct: 35 FTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHL 94 Query: 259 VYGILGS--AVLINFFKMPRSTALVGGLILALMTL 291 ++ +++ F +P AL GG M L Sbjct: 95 WNVMITGHGILMMFFVVIP---ALFGGFGNYFMPL 126 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.139 0.407 Gapped Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,493,079 Number of extensions: 157090 Number of successful extensions: 474 Number of sequences better than 10.0: 1 Number of HSP's gapped: 469 Number of HSP's successfully gapped: 22 Length of query: 425 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 330 Effective length of database: 3,390,050 Effective search space: 1118716500 Effective search space used: 1118716500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (26.8 bits)