RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 66.2 bits (161), Expect = 2e-11
Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%)
Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265
++ SLY + L+ LG + L F G V++ I+ VP V GI
Sbjct: 83 SIFLSLYAGFLATLLALLLGAPTGYILARFDFPG--KRLVESIIDVPVVVPHTVAGIALL 140
Query: 266 AVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRSAALGL 316
V + + + + +++P + + ++V + +AA L
Sbjct: 141 TVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSL 200
Query: 317 GASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATA 376
GA + F LPL+ +L GS ++ ARA+ E ++ + V
Sbjct: 201 GAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------------ 248
Query: 377 FPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425
P IY F+ A + + L ++ ++ + W
Sbjct: 249 -PTLIYDR-------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGW 289
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 61.1 bits (148), Expect = 5e-10
Identities = 83/493 (16%), Positives = 148/493 (30%), Gaps = 184/493 (37%)
Query: 18 EWLFRFYCVVAVLV------VFV-FLILLLSSIVSKGIGALWQTHI-----SLPIEFSET 65
E + +F V+ LV F L L L+ + L I L E
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGNDIHALAAKLLQE--ND 113
Query: 66 IVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQAS----QMLS------ 115
+ K L++ R R SN AL R Q+++
Sbjct: 114 TTLVKTKE------LIKNYIT--ARIMAKRPFDKK-SNSALFRAVGEGNAQLVAIFGGQG 164
Query: 116 TTARY--HLRKTLMTDPSLIGKTVEVS--LLA--SANIDSALKGYLYSPANVHRMSDYQW 169
T Y LR T L+G ++ S L+ A K +++ ++ +W
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFT----QGLNILEW 218
Query: 170 KWFQKLDSDGALFLDFNYGFFINGASSRPEV-----AGIGVAVVG--SL--YMML-IVIG 219
+ S+ P+ I ++G L Y++ ++G
Sbjct: 219 ---------------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 220 LSFP------L--------GIASAIYL------EEF---SHKG----FF----------- 241
+ P L G+ +A+ + E F K FF
Sbjct: 258 FT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 242 ----SSFVQANINNLASVPSIVYGI--LGSAVLINFFK-----MPRSTALVGGLILALMT 290
S ++ ++ N VPS + I L + ++ +P + ++L+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE----ISLVN 372
Query: 291 LPSIIIATG--VALRTVPSSIRS--AALGLGASKV-----QTVFHHV-LPLAMP------ 334
++ +G +L + ++R A GL S++ + F + LP+A P
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 335 -----AI---LTGSTVSLA-----------------RALGET-APLLFVGMVAFVTDYPV 368
I L + VS R L + + + V + PV
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI----VDCIIRLPV 488
Query: 369 GVTD--IATAFPV 379
T F
Sbjct: 489 ---KWETTTQFKA 498
Score = 30.7 bits (69), Expect = 0.59
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 73/216 (33%)
Query: 122 LRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKL---DSD 178
R ++ SL E LL + A+ + F K+ ++
Sbjct: 6 TRPLTLSHGSL-----EHVLLVPTA--------SFFIASQLQEQ------FNKILPEPTE 46
Query: 179 GALFLDFNYGFFINGASSRPEVAG--IGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFS 236
G D + ++ E+ G +G Y V L P + +
Sbjct: 47 G-FAAD-------DEPTTPAELVGKFLG-------Y----VSSLVEPSKVGQFDQVLNLC 87
Query: 237 HKGFFSSFVQAN-INNL-ASVPSIVYGILGSA--VLINFFKMPRSTALVGGLILALMTLP 292
F + +++ N I+ L A + L ++ N+
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT------------------- 128
Query: 293 SIIIATGVALRTVPSSIRSA---ALGLGASKVQTVF 325
A +A R SA A+G G +++ +F
Sbjct: 129 ----ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} SCOP: f.58.1.1
Length = 217
Score = 53.2 bits (127), Expect = 1e-07
Identities = 39/226 (17%), Positives = 79/226 (34%), Gaps = 19/226 (8%)
Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258
V G+ + + + P+G+ + + V A +N S+P I
Sbjct: 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69
Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
+ + + L + P I AL +P+ + A+ +GA
Sbjct: 70 ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128
Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378
+ +Q V +LP A+P ++ +T++L +G +A VG G+ I +
Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA--------GGLGQIGYQYG 180
Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
Y ++LL+I + +I A + ++
Sbjct: 181 YIGYNATV---------MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
>2r6g_F Maltose transport system permease protein MALF; ABC transporter,
catalytic intermediate, E. coli maltose transporter,
MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP:
e.70.1.1 f.58.1.1 PDB: 3fh6_F
Length = 514
Score = 48.6 bits (115), Expect = 2e-06
Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 3/253 (1%)
Query: 169 WKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIAS 228
WK F ++ +D + F F + VG + L+ +
Sbjct: 261 WKNFTRVFTDEGIQKPFLAIFVWTVV--FSLITVFLTVAVGMVLACLVQWEALRGKAVYR 318
Query: 229 AIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILAL 288
+ + ++ F S + + N + + V +F P + + ++
Sbjct: 319 VLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTW 378
Query: 289 MTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARAL 348
+ P ++I L+ +P + A+ GA Q F LPL + + S A
Sbjct: 379 LGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNF 438
Query: 349 GETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAI-LLLLIFL 407
+ + Y A + AI L+ + +
Sbjct: 439 NNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLV 498
Query: 408 AVINTAMLWLRNR 420
+ L
Sbjct: 499 GALAIVNLKATRM 511
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.68
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 90 RKALARKLSIS------DSNHALLRQASQM 113
++AL +KL S DS AL +A+ M
Sbjct: 19 KQAL-KKLQASLKLYADDSAPALAIKAT-M 46
Score = 29.2 bits (64), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 6/25 (24%)
Query: 301 ALRTVPSSIR-----SA-ALGLGAS 319
AL+ + +S++ SA AL + A+
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2,
protein structure initiative; 1.80A {Escherichia coli
K12} SCOP: c.37.1.10
Length = 341
Score = 28.3 bits (62), Expect = 3.8
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 15/141 (10%)
Query: 90 RKALARKLSISDSNHALLRQASQMLSTTARYHLRKTL---MTDPSLIGKTVEVSLLASAN 146
R LA+ +++ +S H + S L + TL +T GK+ +
Sbjct: 21 RATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80
Query: 147 IDSALKGYL------------YSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGA 194
I LK + + RM+D + +
Sbjct: 81 IREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRAREL 140
Query: 195 SSRPEVAGIGVAVVGSLYMML 215
E AG V +V ++ +
Sbjct: 141 MLLCEAAGYDVVIVETVGVGQ 161
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 27.3 bits (59), Expect = 6.0
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVG 369
A + T +L L ++++L +A+ + V +T V
Sbjct: 94 LLKPSMESAGEENTTVVSLLGLVPSTDAVRTSIALLQAVSDIGVPA--ARVWALTRRAVA 151
Query: 370 VTDIATAFPVQIYLW----AADAERP 391
V T LW A E P
Sbjct: 152 VVPGETPQDAGAQLWGFGRVAALELP 177
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 27.5 bits (61), Expect = 6.5
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 200 VAGIGVAVVGSLYMMLIVIGLSFP-LGIASAIYLEEFSHKGFFSSFVQANINNLASVPSI 258
G V ++ + + + + L P + A +LE KGFF S + + N +
Sbjct: 35 FTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHL 94
Query: 259 VYGILGS--AVLINFFKMPRSTALVGGLILALMTL 291
++ +++ F +P AL GG M L
Sbjct: 95 WNVMITGHGILMMFFVVIP---ALFGGFGNYFMPL 126
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.139 0.407
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,493,079
Number of extensions: 157090
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 22
Length of query: 425
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 330
Effective length of database: 3,390,050
Effective search space: 1118716500
Effective search space used: 1118716500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.8 bits)