RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
         (425 letters)



>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
           protein MetI {Escherichia coli [TaxId: 562]}
          Length = 203

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 2/160 (1%)

Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258
           V G+   +  +         +  P+G+   +    +          V A +N   S+P I
Sbjct: 5   VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 64

Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
           +  +                     + L +   P I      AL  +P+ +  A+  +GA
Sbjct: 65  ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 123

Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
           + +Q V   +LP A+P ++  +T++L   +G +A    VG
Sbjct: 124 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163


>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
           permease protein {Methanosarcina acetivorans [TaxId:
           2214]}
          Length = 248

 Score = 34.2 bits (77), Expect = 0.019
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGF-------FSSFVQANINNLASVPSI 258
           ++  SLY   +   L+  LG  +   L  F   G            V  +     ++ ++
Sbjct: 48  SIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTV 107

Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
                     +  +   R       + +  +++P +  +     ++V   + +AA  LGA
Sbjct: 108 FGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGA 167

Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVT 364
              +  F   LPL+   +L GS ++ ARA+ E   ++ +     V 
Sbjct: 168 PLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG 213


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 31.5 bits (70), Expect = 0.14
 Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 16/221 (7%)

Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK-------GFFSSFVQANINNLASVPSI 258
             V ++   LI + L+  +G+  A  ++  + +            +   +  ++     +
Sbjct: 20  IFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGL 79

Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV---------ALRTVPSSI 309
                G   ++         A       A   L  +    G           L+ +P  +
Sbjct: 80  FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDL 139

Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVG 369
             A+   GA   Q  F   LPL +  +      S A        +  +            
Sbjct: 140 YEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTT 199

Query: 370 VTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVI 410
                       Y  A +           AI  L+  L   
Sbjct: 200 PAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGA 240


>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease
           protein MalG {Escherichia coli [TaxId: 562]}
          Length = 290

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 8/226 (3%)

Query: 185 FNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSF 244
             +          P    + + +  S+ +  I       L    A         G  +  
Sbjct: 57  LGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLL 116

Query: 245 VQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALM-TLPSIIIATGVALR 303
               I  +      +  +      +  +         GG+I A +  +   +        
Sbjct: 117 KGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFE 176

Query: 304 TVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFV 363
           T+ SS+  AA   GA+  Q     +LPL++P +     +S   A+ E      +      
Sbjct: 177 TIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNS 236

Query: 364 TDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAV 409
               VG+             +AA A          A+ + ++FL  
Sbjct: 237 YTLAVGMQQYLNPQNYLWGDFAAAA-------VMSALPITIVFLLA 275


>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
           subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 538

 Score = 26.7 bits (59), Expect = 3.7
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 200 VAGIGVAVVGSLYMMLIVIGLSFP-LGIASAIYLEEFSHKGFFSSFVQANINNLASVPSI 258
             G  V ++   + + + + L  P +    A +LE    KGFF S   + + N      +
Sbjct: 22  FTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHL 81

Query: 259 VYGILGS--AVLINFFKMPRSTALVGGLILALMTL 291
              ++     +++ F  +P   AL GG     M L
Sbjct: 82  WNVMITGHGILMMFFVVIP---ALFGGFGNYFMPL 113


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
           303]}
          Length = 155

 Score = 26.3 bits (57), Expect = 4.6
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 140 SLLASANIDSALKGYLYSPANVHRMSDYQWKWFQ 173
           + LA+ NID+A+     S  N++  SD+ +  F 
Sbjct: 32  AHLAAENIDAAI---FTSYHNINYYSDFLYCSFG 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,508,867
Number of extensions: 67816
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 11
Length of query: 425
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,199,356
Effective search space: 404182972
Effective search space used: 404182972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)