RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] (425 letters) >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Score = 52.4 bits (125), Expect = 7e-08 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 2/160 (1%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258 V G+ + + + P+G+ + + V A +N S+P I Sbjct: 5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 64 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + + L + P I AL +P+ + A+ +GA Sbjct: 65 ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 123 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 + +Q V +LP A+P ++ +T++L +G +A VG Sbjct: 124 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163 >d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 248 Score = 34.2 bits (77), Expect = 0.019 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGF-------FSSFVQANINNLASVPSI 258 ++ SLY + L+ LG + L F G V + ++ ++ Sbjct: 48 SIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTV 107 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + R + + +++P + + ++V + +AA LGA Sbjct: 108 FGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGA 167 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVT 364 + F LPL+ +L GS ++ ARA+ E ++ + V Sbjct: 168 PLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG 213 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Length = 244 Score = 31.5 bits (70), Expect = 0.14 Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 16/221 (7%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK-------GFFSSFVQANINNLASVPSI 258 V ++ LI + L+ +G+ A ++ + + + + ++ + Sbjct: 20 IFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGL 79 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV---------ALRTVPSSI 309 G ++ A A L + G L+ +P + Sbjct: 80 FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDL 139 Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVG 369 A+ GA Q F LPL + + S A + + Sbjct: 140 YEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTT 199 Query: 370 VTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVI 410 Y A + AI L+ L Sbjct: 200 PAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGA 240 >d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Length = 290 Score = 26.9 bits (58), Expect = 2.8 Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 8/226 (3%) Query: 185 FNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSF 244 + P + + + S+ + I L A G + Sbjct: 57 LGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLL 116 Query: 245 VQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALM-TLPSIIIATGVALR 303 I + + + + + GG+I A + + + Sbjct: 117 KGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFE 176 Query: 304 TVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFV 363 T+ SS+ AA GA+ Q +LPL++P + +S A+ E + Sbjct: 177 TIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNS 236 Query: 364 TDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAV 409 VG+ +AA A A+ + ++FL Sbjct: 237 YTLAVGMQQYLNPQNYLWGDFAAAA-------VMSALPITIVFLLA 275 >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} Length = 538 Score = 26.7 bits (59), Expect = 3.7 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFP-LGIASAIYLEEFSHKGFFSSFVQANINNLASVPSI 258 G V ++ + + + + L P + A +LE KGFF S + + N + Sbjct: 22 FTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHL 81 Query: 259 VYGILGS--AVLINFFKMPRSTALVGGLILALMTL 291 ++ +++ F +P AL GG M L Sbjct: 82 WNVMITGHGILMMFFVVIP---ALFGGFGNYFMPL 113 >d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Length = 155 Score = 26.3 bits (57), Expect = 4.6 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Query: 140 SLLASANIDSALKGYLYSPANVHRMSDYQWKWFQ 173 + LA+ NID+A+ S N++ SD+ + F Sbjct: 32 AHLAAENIDAAI---FTSYHNINYYSDFLYCSFG 62 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.139 0.407 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,508,867 Number of extensions: 67816 Number of successful extensions: 187 Number of sequences better than 10.0: 1 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 11 Length of query: 425 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 337 Effective length of database: 1,199,356 Effective search space: 404182972 Effective search space used: 404182972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 54 (24.8 bits)