BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780705|ref|YP_003065118.1| phosphate ABC transporter,
permease protein PstA [Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
Liberibacter asiaticus str. psy62]
Length = 425
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 1 MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPI 60
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPI
Sbjct: 1 MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPI 60
Query: 61 EFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARY 120
EFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARY
Sbjct: 61 EFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARY 120
Query: 121 HLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGA 180
HLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGA
Sbjct: 121 HLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGA 180
Query: 181 LFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGF 240
LFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGF
Sbjct: 181 LFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGF 240
Query: 241 FSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV 300
FSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV
Sbjct: 241 FSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGV 300
Query: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV 360
ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV
Sbjct: 301 ALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMV 360
Query: 361 AFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNR 420
AFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNR
Sbjct: 361 AFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNR 420
Query: 421 FKKRW 425
FKKRW
Sbjct: 421 FKKRW 425
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 67.4 bits (163), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266
++G+ Y+ I + S P+G+ AIY+ E++ K + ++ L +P+IVYG +
Sbjct: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315
Query: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309
++ F + + + L GL++ +M +P + + + ++P S+
Sbjct: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375
Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351
R +LGLGA++ +T+ + + P A P I ++ +R +GET
Sbjct: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGET 417
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 281
Score = 33.5 bits (75), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 223 PLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVG 282
PLG+ +A Y F S ++ ++++ ++P+ VY ++ + VL +P A +
Sbjct: 113 PLGVLAAWYPR-------FYSIIRLFLDSMQTIPTFVY-LIPALVLFGLGMVPGIVATI- 163
Query: 283 GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHV-LPLAMPAILTGST 341
+ ++P+ + T + + + P ++ AA GA+ Q VF V LP A+P I+ T
Sbjct: 164 -----VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQ-VFRKVELPFAIPQIVASLT 217
Query: 342 VSLARAL 348
++ +L
Sbjct: 218 QTIMLSL 224
>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Length = 723
Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 45 SKGIGALWQTHISLPIEFSETIVDPQ 70
K I +WQ LPI SE++ D Q
Sbjct: 591 DKNIECVWQDEALLPIPKSESLEDIQ 616
>gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 394
Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 220 LSFPLGIASAIYLEEFSHKGFFSSFVQAN--INNLASVPSIVYGILGSAVLINFFKMPR 276
+FP + + + E KG + V N I+N ++ PS ++ SA++ F + P
Sbjct: 213 FTFPYSFSPDLLISE---KGNLVALVDKNTLISNYSNPPSFIFSQWKSALITPFHEAPH 268
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,559
Number of Sequences: 1233
Number of extensions: 9760
Number of successful extensions: 54
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 13
length of query: 425
length of database: 328,796
effective HSP length: 76
effective length of query: 349
effective length of database: 235,088
effective search space: 82045712
effective search space used: 82045712
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)