HHsearch alignment for GI: 254780707 and conserved domain: COG0687
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].
Probab=92.92 E-value=0.59 Score=24.08 Aligned_cols=282 Identities=14% Similarity=0.105 Sum_probs=119.5
Q ss_pred CCHHHH---HHHHHHHHHHHHC-CCCCC-CCEEEEE-ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHH
Q ss_conf 924899---9999999999831-42013-7679998-034258999999999998779807999815762-057898852
Q gi|254780707|r 1 MRFFFV---VLMCFVVLEVYCG-TGTFA-RNRIRIA-GSSTLFPYSKIIAENFSEYFPEFKTPFVESGGS-SVGLKEFCR 73 (346)
Q Consensus 1 Mk~~~~---~~~~~~~l~~~~~-~~~~a-~~~I~i~-GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GS-g~Gi~~~~~ 73 (346)
T Consensus 2 ~k~~~~~~~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~~~---~~~~F~k~t-Gi~V-~~~~~~sne~~~ak~~~ 76 (363)
T COG0687 2 MKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPA---LLKPFEKET-GIKV-VYDTFDSNEEMLAKLKA 76 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCCHH---HHHHHHHHH-CCEE-EEECCCCHHHHHHHHHH
T ss_conf 414666678999999999860004566257859996478755778---899899998-9979-99538986999999980
Q ss_pred HCCCCCCCEEECCCCCCH-------------HHHHH------H-HHCC---CCCCEEEEEECCCCEEEECCCCCCCCCCH
Q ss_conf 101335301213320247-------------67876------7-6248---78724666521541255416665456888
Q gi|254780707|r 74 GIGDDTIDIVNSSRKITQ-------------NELDE------C-KKHG---VSDIQEVTIGHDGILLVSDRDMVSVSLTV 130 (346)
Q Consensus 74 G~~~~~~dig~ssr~l~~-------------~E~~~------~-~~~~---~~~~~~~~v~~d~i~i~~n~~~~~~~lt~ 130 (346)
T Consensus 77 g~~--~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~---- 150 (363)
T COG0687 77 GGG--GYDVVVPSGYFVARLIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKD---- 150 (363)
T ss_pred CCC--CCCEEECCHHHHHHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEECEEEEEEEEEEEEECCCCCC----
T ss_conf 899--98879718889999986675675896666482116987835776788886031678864699998000589----
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHCCC-C-CCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 888876410255555323673023231001-1-12245035448854235789998851345556541011111013660
Q gi|254780707|r 131 EDLYKALASYLIVDDKVVFNPLKKWSEIRP-D-FPEVRIAIYVPSGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNV 208 (346)
Q Consensus 131 ~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~-~-lp~~~I~~~~r~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~ 208 (346)
T Consensus 151 ------------------~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~-~~~~~~~------- 204 (363)
T COG0687 151 ------------------APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNT-TDPEDLK------- 204 (363)
T ss_pred ------------------CCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCHHHHH-------
T ss_conf ------------------99998899983842002232575301366057899999971899788-9988999-------
Q ss_pred HHCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCC--CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf 001344431024664021166236777631015321--001332001100111001344576789556027987503678
Q gi|254780707|r 209 QQLSVACTSVRQDGIAIEVDGDYTETLARIEVNKDV--FGFVGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPL 286 (346)
Q Consensus 209 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~--igy~~~~~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~l 286 (346)
T Consensus 205 ~a-~~~L~~~kp---~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~--~~~~~~i~~~~p~-----eG~~~w~--D 271 (363)
T COG0687 205 KA-FDLLDKLKP---VNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKA--AKNGAPIEFVIPK-----EGSILWF--D 271 (363)
T ss_pred HH-HHHHHHHCC---CEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHH--CCCCCEEEEECCC-----CCCEEEE--E
T ss_conf 99-999997278---50899636278889866997899977778999862--5589805773478-----8734787--8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCHHHCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 9997078856688999999997498740522027755963489999999
Q gi|254780707|r 287 LFYVKRQHFNSVLGLREYVSFSVSDEMMAPDSQLFQYGLIPISNEERKS 335 (346)
Q Consensus 287 y~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~~~~~~~~GyvPLp~~~~~~ 335 (346)
T Consensus 272 ~~~ipk~a~-n~~~A~~fInf~~~pe~~a~--~~~~~~y~~~n~~a~~~ 317 (363)
T COG0687 272 NLAIPKGAK-NVDAAYKFINFLLDPEVAAK--LAEFVGYAPPNKAARKL 317 (363)
T ss_pred EEEEECCCC-CHHHHHHHHHHHCCHHHHHH--HHHHHCCCCCCHHHHHH
T ss_conf 899879999-98999999998519899999--98732678888777754