HHsearch alignment for GI: 254780707 and conserved domain: COG2358
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only].
Probab=96.57 E-value=0.011 Score=33.72 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCEEEE-EECC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHC
Q ss_conf 3767999-8034--258999999999998779807999815762057898852101335301213320247678767624
Q gi|254780707|r 24 ARNRIRI-AGSS--TLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKH 100 (346)
Q Consensus 24 a~~~I~i-~GSs--t~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~ 100 (346)
T Consensus 24 ~~~~itigTG~~~G~YY~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge----~d~alvq~d~---a~~ay~G~ 96 (321)
T COG2358 24 EPKFITIGTGSTGGVYYPIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGE----ADLALVQSDV---AYEAYNGT 96 (321)
T ss_pred CCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCC----CCHHHHHHHH---HHHHHHCC
T ss_conf 7637999606998622303789999985147781899960654299998675376----2535666789---99987185
Q ss_pred CCC-------CCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 878-------7246665215412554166654568888888764102555553236730232310011122450354488
Q gi|254780707|r 101 GVS-------DIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRPDFPEVRIAIYVPS 173 (346)
Q Consensus 101 ~~~-------~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~~lp~~~I~~~~r~ 173 (346)
T Consensus 97 g~f~~~~~~~~lr~v~~ly---------pe~~~vv~r~d-----------------~~Ikti~DL~GK------rV~iG~ 144 (321)
T COG2358 97 GSFEGKGKDENLRAVAALY---------PEPFHVVTRKD-----------------AGIKTIADLKGK------RVAIGP 144 (321)
T ss_pred CCCCCCCCCCCHHHHEECC---------CCEEEEEEECC-----------------CCCCEEHHCCCC------EEEECC
T ss_conf 3114566551433221305---------42089999668-----------------896560103898------886269
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 5423578999885
Q gi|254780707|r 174 GKHGTREVLEKKV 186 (346)
Q Consensus 174 ~~SGT~~~F~~~v 186 (346)
T Consensus 145 ~gSgt~~~a~~il 157 (321)
T COG2358 145 PGSGTEATARQIL 157 (321)
T ss_pred CCCCCHHHHHHHH
T ss_conf 9974088999999