HHsearch alignment for GI: 254780707 and conserved domain: COG4143
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism].
Probab=97.31 E-value=0.0099 Score=33.96 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH-H--HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH-HHCC
Q ss_conf 9248999999999999831420137679998034258-9--9999999999877980799981576205789885-2101
Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLF-P--YSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFC-RGIG 76 (346)
Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~-P--~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~-~G~~ 76 (346)
T Consensus 1 m~~~l~~~~~~all~~~~~~a~~~t~~LtVytydSF~~ewg~Gp~vk~~FE~~~-~~~v~fV~~~d~v~llnRl~leg~- 78 (336)
T COG4143 1 MRRLLRALIGLALLVSAALGAQAATPTLTVYTYDSFASEWGPGPKVKKAFEAEY-GCKVNFVALGDGVELLNRLILEGK- 78 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHHCCC-
T ss_conf 902499999999999986577634853899997634225688578999999985-952899970758999999997078-
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCC------------------CEEEEEECCCCEEEECCCC
Q ss_conf 3353012133202476787676248787------------------2466652154125541666
Q gi|254780707|r 77 DDTIDIVNSSRKITQNELDECKKHGVSD------------------IQEVTIGHDGILLVSDRDM 123 (346)
Q Consensus 77 ~~~~dig~ssr~l~~~E~~~~~~~~~~~------------------~~~~~v~~d~i~i~~n~~~ 123 (346)
T Consensus 79 ~~~ADvv---vGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~ 140 (336)
T COG4143 79 NPKADVV---VGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTK 140 (336)
T ss_pred CCCCCEE---EECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
T ss_conf 9888589---9347277888885587666789855788876535675101245412899976577