HHsearch alignment for GI: 254780707 and conserved domain: COG4588
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=98.32 E-value=0.00017 Score=43.75 Aligned_cols=246 Identities=17% Similarity=0.202 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 92489999999999998314201376799980342589999999999987798079998157620578988521013353
Q gi|254780707|r 1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTI 80 (346)
Q Consensus 1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~ 80 (346)
T Consensus 1 Mk~~~~i~~~~~La~---s~~--~~adinlYGpGGPhtaL~~vA~~~~ektg-~kV-nvt~GPq~tW~~kAk---knADi 70 (252)
T COG4588 1 MKKAVLILLIFLLAF---SSA--ANADINLYGPGGPHTALKDVAKKYEEKTG-IKV-NVTAGPQATWNEKAK---KNADI 70 (252)
T ss_pred CCHHHHHHHHHHHHH---HHH--HCCEEEEECCCCCCHHHHHHHHHHHHHHC-EEE-EEECCCCCHHHHHHH---CCCCE
T ss_conf 933688999999972---464--04517876699986789999999878748-079-994188610445641---36745
Q ss_pred CEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 01213320247678767624878724666521541255416665456888888876410255555323673023231001
Q gi|254780707|r 81 DIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP 160 (346)
Q Consensus 81 dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~ 160 (346)
T Consensus 71 lfgaseqsalai-a~~~-~~~fs~~~i~ply~R~aiIlvkkgNPknIk~~eDll~------------------------- 123 (252)
T COG4588 71 LFGASEQSALAI-AEDH-KDSFSEKNIQPLYLRPAIILVKKGNPKNIKGFEDLLK------------------------- 123 (252)
T ss_pred EECCCHHHHHHH-HHHC-CCCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHC-------------------------
T ss_conf 641648889999-9856-3335520253135402179962799544456888705-------------------------
Q ss_pred CCCCCCCEEECC---CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHH
Q ss_conf 112245035448---85423578999885134555654101111101366000134443102466402116623677763
Q gi|254780707|r 161 DFPEVRIAIYVP---SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLAR 237 (346)
Q Consensus 161 ~lp~~~I~~~~r---~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 237 (346)
T Consensus 124 --~gi~ivV~dGaG~sntsg-tgvwED~agr~~~i--------------------e~v~afR~--NI~~fapnSgaArka 178 (252)
T COG4588 124 --PGIGIVVNDGAGVSNTSG-TGVWEDIAGRKGNI--------------------ETVAAFRK--NIVAFAPNSGAARKA 178 (252)
T ss_pred --CCCEEEEECCCCCCCCCC-CEEHHHHHCCCCCH--------------------HHHHHHHH--CEEEECCCCCHHHHH
T ss_conf --786299837976447777-22048654101148--------------------89999885--238974687048999
Q ss_pred HCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCC
Q ss_conf 10153210013320-01100111001344576789556027987503678999707885668899999999749874052
Q gi|254780707|r 238 IEVNKDVFGFVGLS-FYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAP 316 (346)
Q Consensus 238 v~~~~~~igy~~~~-~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~ 316 (346)
T Consensus 179 f~~~~~aDawItW~dWa~snpdig~-----~v~------~~~d~vIyRd~nv~~~~~---a~~ea~~F~dyl~S~EAq~- 243 (252)
T COG4588 179 FENQPDADAWITWADWAKSNPDIGD-----AVE------IEKDYVIYRDFNVALAKD---ANKEARDFADYLQSDEAQK- 243 (252)
T ss_pred HHCCCCCCEEEEECCHHHHCCCHHC-----EEE------CCCCEEEEEECCEEECCC---CCHHHHHHHHHHHHHHHHH-
T ss_conf 8549998558870132330985010-----045------166617754020343689---9978999999972177899-
Q ss_pred CCHHHHCCC
Q ss_conf 202775596
Q gi|254780707|r 317 DSQLFQYGL 325 (346)
Q Consensus 317 ~~~~~~~Gy 325 (346)
T Consensus 244 --ifkkygW 250 (252)
T COG4588 244 --IFKKYGW 250 (252)
T ss_pred --HHHHHCC
T ss_conf --9986076