HHsearch alignment for GI: 254780707 and conserved domain: COG4588

>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only].
Probab=98.32  E-value=0.00017  Score=43.75  Aligned_cols=246  Identities=17%  Similarity=0.202  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             92489999999999998314201376799980342589999999999987798079998157620578988521013353
Q gi|254780707|r    1 MRFFFVVLMCFVVLEVYCGTGTFARNRIRIAGSSTLFPYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTI   80 (346)
Q Consensus         1 Mk~~~~~~~~~~~l~~~~~~~~~a~~~I~i~GSst~~P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~   80 (346)
T Consensus         1 Mk~~~~i~~~~~La~---s~~--~~adinlYGpGGPhtaL~~vA~~~~ektg-~kV-nvt~GPq~tW~~kAk---knADi   70 (252)
T COG4588           1 MKKAVLILLIFLLAF---SSA--ANADINLYGPGGPHTALKDVAKKYEEKTG-IKV-NVTAGPQATWNEKAK---KNADI   70 (252)
T ss_pred             CCHHHHHHHHHHHHH---HHH--HCCEEEEECCCCCCHHHHHHHHHHHHHHC-EEE-EEECCCCCHHHHHHH---CCCCE
T ss_conf             933688999999972---464--04517876699986789999999878748-079-994188610445641---36745


Q ss_pred             CEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             01213320247678767624878724666521541255416665456888888876410255555323673023231001
Q gi|254780707|r   81 DIVNSSRKITQNELDECKKHGVSDIQEVTIGHDGILLVSDRDMVSVSLTVEDLYKALASYLIVDDKVVFNPLKKWSEIRP  160 (346)
Q Consensus        81 dig~ssr~l~~~E~~~~~~~~~~~~~~~~v~~d~i~i~~n~~~~~~~lt~~~l~~~~~~~~~~~~~i~~g~i~~W~~~~~  160 (346)
T Consensus        71 lfgaseqsalai-a~~~-~~~fs~~~i~ply~R~aiIlvkkgNPknIk~~eDll~-------------------------  123 (252)
T COG4588          71 LFGASEQSALAI-AEDH-KDSFSEKNIQPLYLRPAIILVKKGNPKNIKGFEDLLK-------------------------  123 (252)
T ss_pred             EECCCHHHHHHH-HHHC-CCCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHC-------------------------
T ss_conf             641648889999-9856-3335520253135402179962799544456888705-------------------------


Q ss_pred             CCCCCCCEEECC---CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCCCCCCCCCEECCCCHHHHHHH
Q ss_conf             112245035448---85423578999885134555654101111101366000134443102466402116623677763
Q gi|254780707|r  161 DFPEVRIAIYVP---SGKHGTREVLEKKVLQEGCVRSRNFSKMRDMFKYNVQQLSVACTSVRQDGIAIEVDGDYTETLAR  237 (346)
Q Consensus       161 ~lp~~~I~~~~r---~~~SGT~~~F~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  237 (346)
T Consensus       124 --~gi~ivV~dGaG~sntsg-tgvwED~agr~~~i--------------------e~v~afR~--NI~~fapnSgaArka  178 (252)
T COG4588         124 --PGIGIVVNDGAGVSNTSG-TGVWEDIAGRKGNI--------------------ETVAAFRK--NIVAFAPNSGAARKA  178 (252)
T ss_pred             --CCCEEEEECCCCCCCCCC-CEEHHHHHCCCCCH--------------------HHHHHHHH--CEEEECCCCCHHHHH
T ss_conf             --786299837976447777-22048654101148--------------------89999885--238974687048999


Q ss_pred             HCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHCCC
Q ss_conf             10153210013320-01100111001344576789556027987503678999707885668899999999749874052
Q gi|254780707|r  238 IEVNKDVFGFVGLS-FYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNSVLGLREYVSFSVSDEMMAP  316 (346)
Q Consensus       238 v~~~~~~igy~~~~-~~~~~~~~~~~~~~~~v~p~~~~i~~g~YPl~r~ly~yv~~~~~~~~~~~~~Fl~~~ls~~~~~~  316 (346)
T Consensus       179 f~~~~~aDawItW~dWa~snpdig~-----~v~------~~~d~vIyRd~nv~~~~~---a~~ea~~F~dyl~S~EAq~-  243 (252)
T COG4588         179 FENQPDADAWITWADWAKSNPDIGD-----AVE------IEKDYVIYRDFNVALAKD---ANKEARDFADYLQSDEAQK-  243 (252)
T ss_pred             HHCCCCCCEEEEECCHHHHCCCHHC-----EEE------CCCCEEEEEECCEEECCC---CCHHHHHHHHHHHHHHHHH-
T ss_conf             8549998558870132330985010-----045------166617754020343689---9978999999972177899-


Q ss_pred             CCHHHHCCC
Q ss_conf             202775596
Q gi|254780707|r  317 DSQLFQYGL  325 (346)
Q Consensus       317 ~~~~~~~Gy  325 (346)
T Consensus       244 --ifkkygW  250 (252)
T COG4588         244 --IFKKYGW  250 (252)
T ss_pred             --HHHHHCC
T ss_conf             --9986076