HHsearch alignment for GI: 254780707 and conserved domain: PRK03601
>PRK03601 transcriptional regulator HdfR; Provisional.
Probab=97.53 E-value=0.0052 Score=35.51 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7679998034258-999999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r 25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS 103 (346)
Q Consensus 25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~ 103 (346)
T Consensus 88 ~~~l~ig~~~~~~~~~l~~~l~~~~~~~P~v~l~-l~~~~~~~~~~~L~~~~----~Dl~i~~~~p~~~~l--------- 153 (275)
T PRK03601 88 HNEFSIGASASLWECMLNQWLGRLYQNQEELQFE-ARIAQRQSLVKQLHERQ----LDLLITTEAPKMDEF--------- 153 (275)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCCE---------
T ss_conf 7609999775778999999999999978896799-99889899999997799----358997779988884---------
Q ss_pred CCEEEEEECCCCEEEECCCC
Q ss_conf 72466652154125541666
Q gi|254780707|r 104 DIQEVTIGHDGILLVSDRDM 123 (346)
Q Consensus 104 ~~~~~~v~~d~i~i~~n~~~ 123 (346)
T Consensus 154 --~~~~l~~~~l~l~~s~~~ 171 (275)
T PRK03601 154 --SSQLLGHFTLALYTSAPS 171 (275)
T ss_pred --EEEEECCEEEEEEECCCC
T ss_conf --799952356899977864