HHsearch alignment for GI: 254780707 and conserved domain: PRK03601

>PRK03601 transcriptional regulator HdfR; Provisional.
Probab=97.53  E-value=0.0052  Score=35.51  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             7679998034258-999999999998779807999815762057898852101335301213320247678767624878
Q gi|254780707|r   25 RNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKKHGVS  103 (346)
Q Consensus        25 ~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~~~~~  103 (346)
T Consensus        88 ~~~l~ig~~~~~~~~~l~~~l~~~~~~~P~v~l~-l~~~~~~~~~~~L~~~~----~Dl~i~~~~p~~~~l---------  153 (275)
T PRK03601         88 HNEFSIGASASLWECMLNQWLGRLYQNQEELQFE-ARIAQRQSLVKQLHERQ----LDLLITTEAPKMDEF---------  153 (275)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCCE---------
T ss_conf             7609999775778999999999999978896799-99889899999997799----358997779988884---------


Q ss_pred             CCEEEEEECCCCEEEECCCC
Q ss_conf             72466652154125541666
Q gi|254780707|r  104 DIQEVTIGHDGILLVSDRDM  123 (346)
Q Consensus       104 ~~~~~~v~~d~i~i~~n~~~  123 (346)
T Consensus       154 --~~~~l~~~~l~l~~s~~~  171 (275)
T PRK03601        154 --SSQLLGHFTLALYTSAPS  171 (275)
T ss_pred             --EEEEECCEEEEEEECCCC
T ss_conf             --799952356899977864