HHsearch alignment for GI: 254780707 and conserved domain: PRK09791
>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=96.04 E-value=0.092 Score=28.57 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEECCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 20137679998034258-99999999999877980799981576205789885210133530121332024767876762
Q gi|254780707|r 21 GTFARNRIRIAGSSTLF-PYSKIIAENFSEYFPEFKTPFVESGGSSVGLKEFCRGIGDDTIDIVNSSRKITQNELDECKK 99 (346)
Q Consensus 21 ~~~a~~~I~i~GSst~~-P~~~~~a~~y~~~~~~~~~~~~~~~GSg~Gi~~~~~G~~~~~~dig~ssr~l~~~E~~~~~~ 99 (346)
T Consensus 90 ~~~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~-i~~~~~~~~~~~l~~g~----~D~~i~~~~~~~~~------ 158 (302)
T PRK09791 90 QGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVR-IMEGQLVSMINELRQGE----LDFTINTYYQGPYD------ 158 (302)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCC----CCEEEECCCCCCCC------
T ss_conf 06766339998626889871199999999988797799-99899999999998799----77899656788788------
Q ss_pred CCCCCCEEEEEECCCCEEEECCCCCCC
Q ss_conf 487872466652154125541666545
Q gi|254780707|r 100 HGVSDIQEVTIGHDGILLVSDRDMVSV 126 (346)
Q Consensus 100 ~~~~~~~~~~v~~d~i~i~~n~~~~~~ 126 (346)
T Consensus 159 ---~~l~~~~l~~~~~~~v~~~~hpl~ 182 (302)
T PRK09791 159 ---HEFTFEKLLEKQFAIFCRPGHPAI 182 (302)
T ss_pred ---CCEEEEEEEEEEEEEEECCCCCCC
T ss_conf ---764799977401599983898435